TCONS_00052030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052030
Unique NameTCONS_00052030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052030 ID=TCONS_00052030|Name=TCONS_00052030|organism=Clytia hemisphaerica|type=transcript|length=160bp
aaaaagagaaaaaacatgaaaaacaacgTACCAGAGTGGCCAGAAGTGAC
AGCTGGAAGCTGACCAAGATGGCTGAAAGCCAAATGACTATGTCCAAACG
TAGACAAAGTCTGAATGTGCAAAATTGAATTgacaattgaaaattgaatt
tgaagttTTG
Run BLAST on NCBI

transcript from alignment at scaffold_208:350655..350814

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052030 ID=TCONS_00052030|Name=TCONS_00052030|organism=Clytia hemisphaerica|type=transcript|length=160bp|location=Sequence derived from alignment at scaffold_208:350655..350814 (Clytia hemisphaerica)
CAAaacttcaaattcaattttcaattgtcAATTCAATTTTGCACATTCAG
ACTTTGTCTACGTTTGGACATAGTCATTTGGCTTTCAGCCATCTTGGTCA
GCTTCCAGCTGTCACTTCTGGCCACTCTGGTAcgttgtttttcatgtttt
ttctcttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032946XLOC_032946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052030-exon-scaffold_208-1491911889:350655..350814TCONS_00052030-exon-scaffold_208-1491911889:350655..350814Clytia hemisphaericaexon
TCONS_00052030-exon-scaffold_208-1510915933:350655..350814TCONS_00052030-exon-scaffold_208-1510915933:350655..350814Clytia hemisphaericaexon
TCONS_00052030-exon-scaffold_208-1575043694:350655..350814TCONS_00052030-exon-scaffold_208-1575043694:350655..350814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:350655..350814 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top