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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052022 ID=TCONS_00052022|Name=TCONS_00052022|organism=Clytia hemisphaerica|type=transcript|length=1034bp
TTTTGACATCATCTGATGCTTTTTCATCTGGAAAATCTGCTGGCTTCTCA
TTCATGTTGGATATTCCAAATAAATTTAGAGCAGCAGCCACAATATAACC
CTTTCCGACACTAATAAAGAATTCTTCACATCCCTCGTAGCTGTCAACAA
CTTTCTTTGGAGTGACATTTTTGCGGTTTAGTTTTTCCCGAAAAAATTTA
AGAGTTCCTTTTTCATTTACTGATtctggaacgtacaataagttGAAACA
GTATTGTAAAAGAGACGCTTTGGTGTGCCACATAACTGGCTTGAAAGGTG
AGCAATGTTCCAGGCGATCTGTTGGGGTGTGACACCCTTGGAGGAGATCT
TTCGCTCCAGAAAAACGAATCCTGGAAAGCTGATCCCCTGCAAATACAAT
CTTATTGTCTTTCATGGGGTCATTACTGGTAAACACTACTTGTGCCATGG
GTTGACCAGGATCAGCCTGATTGCTCTCAGGAACAACATCAACAACAATA
TCTGGGATTTCAGGAGGAGCTAAACCAGCCTTGTCATACAACTCCCAAAT
CCATTTTTCatatgtacgtaaaattttgaCACATTTAGCCTCATCTGCAT
CAATTATAGGAAGTGTGGCTGTTACGGATTTACATTTCATGACATCAGAA
AATTTATGTTCAATGTGATCAggataaaaagatgaaaaaattttgaattc
aggaaaaaattcaaacaaaatgcgAGCAATCAACACCTTTACAGATGAGA
CGTAAGATTTCCACTCATTtacatttggaagtagctgagAAGTCTTCAAT
TCACTTATCTTTCCAATAGGTTTGGCGTTTGGAAGGTCTTTAAAGTCCAA
ACGGTTTGCCACTAGGTTGGAGGCAAATAGGTGCAAATCTTTATTTTGAA
TTGCTTTTCGCATATGGTCCATTTTGATTTTAAGGTCCCAGTTATCACCA
GTGCCCCGAAGGGTTGCACCTTTTTTCAGTAGTACAACAGCTTTATCCAT
AAAATGGCTACCGATAGCATTTAAAAGAGTGTCT Run BLAST on NCBI protein sequence of TCONS_00052022-protein >TCONS_00052022-protein ID=TCONS_00052022-protein|Name=TCONS_00052022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
DTLLNAIGSHFMDKAVVLLKKGATLRGTGDNWDLKIKMDHMRKAIQNKDL
HLFASNLVANRLDFKDLPNAKPIGKISELKTSQLLPNVNEWKSYVSSVKV
LIARILFEFFPEFKIFSSFYPDHIEHKFSDVMKCKSVTATLPIIDADEAK
CVKILRTYEKWIWELYDKAGLAPPEIPDIVVDVVPESNQADPGQPMAQVV
FTSNDPMKDNKIVFAGDQLSRIRFSGAKDLLQGCHTPTDRLEHCSPFKPV
MWHTKASLLQYCFNLLYVPESVNEKGTLKFFREKLNRKNVTPKKVVDSYE
GCEEFFISVGKGYIVAAALNLFGISNMNEKPADFPDEKASDDVK Run BLAST on NCBI transcript from alignment at scaffold_208:265058..266091 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052022 ID=TCONS_00052022|Name=TCONS_00052022|organism=Clytia hemisphaerica|type=transcript|length=1034bp|location=Sequence derived from alignment at scaffold_208:265058..266091 (Clytia hemisphaerica)
AGACACTCTTTTAAATGCTATCGGTAGCCATTTTATGGATAAAGCTGTTG
TACTACTGAAAAAAGGTGCAACCCTTCGGGGCACTGGTGATAACTGGGAC
CTTAAAATCAAAATGGACCATATGCGAAAAGCAATTCAAAATAAAGATTT
GCACCTATTTGCCTCCAACCTAGTGGCAAACCGTTTGGACTTTAAAGACC
TTCCAAACGCCAAACCTATTGGAAAGATAAGTGAATTGAAGACTTctcag
ctacttccaaatgtaAATGAGTGGAAATCTTACGTCTCATCTGTAAAGGT
GTTGATTGCTcgcattttgtttgaattttttcctgaattcaaaatttttt
catctttttatccTGATCACATTGAACATAAATTTTCTGATGTCATGAAA
TGTAAATCCGTAACAGCCACACTTCCTATAATTGATGCAGATGAGGCTAA
ATGTGtcaaaattttacgtacatatGAAAAATGGATTTGGGAGTTGTATG
ACAAGGCTGGTTTAGCTCCTCCTGAAATCCCAGATATTGTTGTTGATGTT
GTTCCTGAGAGCAATCAGGCTGATCCTGGTCAACCCATGGCACAAGTAGT
GTTTACCAGTAATGACCCCATGAAAGACAATAAGATTGTATTTGCAGGGG
ATCAGCTTTCCAGGATTCGTTTTTCTGGAGCGAAAGATCTCCTCCAAGGG
TGTCACACCCCAACAGATCGCCTGGAACATTGCTCACCTTTCAAGCCAGT
TATGTGGCACACCAAAGCGTCTCTTTTACAATACTGTTTCaacttattgt
acgttccagaATCAGTAAATGAAAAAGGAACTCTTAAATTTTTTCGGGAA
AAACTAAACCGCAAAAATGTCACTCCAAAGAAAGTTGTTGACAGCTACGA
GGGATGTGAAGAATTCTTTATTAGTGTCGGAAAGGGTTATATTGTGGCTG
CTGCTCTAAATTTATTTGGAATATCCAACATGAATGAGAAGCCAGCAGAT
TTTCCAGATGAAAAAGCATCAGATGATGTCAAAA Coding sequence (CDS) from alignment at scaffold_208:265058..266091 >TCONS_00052022 ID=TCONS_00052022|Name=TCONS_00052022|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_208:265058..266091 (Clytia hemisphaerica)
GACACTCTTTTAAATGCTATCGGTAGCCATTTTATGGATAAAGCTGTTGT
ACTACTGAAAAAAGGTGCAACCCTTCGGGGCACTGGTGATAACTGGGACC
TTAAAATCAAAATGGACCATATGCGAAAAGCAATTCAAAATAAAGATTTG
CACCTATTTGCCTCCAACCTAGTGGCAAACCGTTTGGACTTTAAAGACCT
TCCAAACGCCAAACCTATTGGAAAGATAAGTGAATTGAAGACTTctcagc
tacttccaaatgtaAATGAGTGGAAATCTTACGTCTCATCTGTAAAGGTG
TTGATTGCTcgcattttgtttgaattttttcctgaattcaaaattttttc
atctttttatccTGATCACATTGAACATAAATTTTCTGATGTCATGAAAT
GTAAATCCGTAACAGCCACACTTCCTATAATTGATGCAGATGAGGCTAAA
TGTGtcaaaattttacgtacatatGAAAAATGGATTTGGGAGTTGTATGA
CAAGGCTGGTTTAGCTCCTCCTGAAATCCCAGATATTGTTGTTGATGTTG
TTCCTGAGAGCAATCAGGCTGATCCTGGTCAACCCATGGCACAAGTAGTG
TTTACCAGTAATGACCCCATGAAAGACAATAAGATTGTATTTGCAGGGGA
TCAGCTTTCCAGGATTCGTTTTTCTGGAGCGAAAGATCTCCTCCAAGGGT
GTCACACCCCAACAGATCGCCTGGAACATTGCTCACCTTTCAAGCCAGTT
ATGTGGCACACCAAAGCGTCTCTTTTACAATACTGTTTCaacttattgta
cgttccagaATCAGTAAATGAAAAAGGAACTCTTAAATTTTTTCGGGAAA
AACTAAACCGCAAAAATGTCACTCCAAAGAAAGTTGTTGACAGCTACGAG
GGATGTGAAGAATTCTTTATTAGTGTCGGAAAGGGTTATATTGTGGCTGC
TGCTCTAAATTTATTTGGAATATCCAACATGAATGAGAAGCCAGCAGATT
TTCCAGATGAAAAAGCATCAGATGATGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052022-exon-scaffold_208-1491911889:265058..266091 | TCONS_00052022-exon-scaffold_208-1491911889:265058..266091 | Clytia hemisphaerica | exon |
| TCONS_00052022-exon-scaffold_208-1510915933:265058..266091 | TCONS_00052022-exon-scaffold_208-1510915933:265058..266091 | Clytia hemisphaerica | exon |
| TCONS_00052022-exon-scaffold_208-1575043694:265058..266091 | TCONS_00052022-exon-scaffold_208-1575043694:265058..266091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:265058..266091 . |
Blast
The following BLAST results are available for this feature:
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