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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052020 ID=TCONS_00052020|Name=TCONS_00052020|organism=Clytia hemisphaerica|type=transcript|length=802bp
CGAAAAGCTCAACATCCTCTGAAGAAAATGATTACGATGAAAGTGATGTT
TTCGTTGATCGTTCAAAGTTAGCAATCACCCAGGAAATGTTTACTGAAGA
GATCGCTAAACTACATGCTTCTCTCTCAGAAGAAATCTCCAATGCTAGTG
CAGAAATTATCAAGCAACTAAAAAGTGAGAATGAATTATTAAAAGAGGAa
ttgaaagaaacaaaaaatagaCTGACAAAGATTGAAATTGAGAATATAAA
CCTACAGCAATATGTAAGGCGAAATAACGTAGAAATTCACGGAATCCCAG
ACGAAGAAGACGAAGATCTggaatcaaaaattttatcgaTAGCCGACAGC
ATTGGCATTGTTATCCACAAATCCGACATAGAAGCTTGTCATAgattgaa
aaaaagtaaaaaagacaaaaactcACGAACAATAATTAGATTTGTCAATA
GAAAGAAATGTGATATcttacatcaaaacaaaaagaattttaagGGAAAA
GCTGCGAAAGAGAAACTGGCAAGAATTGGTATTAATAATAACATTTTCAT
TAACTGTAATCTGGCTCCTTATACAAAATTCCTATGGAGCTCATGTAAAA
AACTCTTTGACGAGAAACTAATTGATCGTTTTTGGGTATATAATGGTACT
ATTTTCATTTCAAGCAAAGAAAACGGGATTGATGTAAAGACAAAAATCGA
ACACTTGAGTGTGTTAGAAAGTACTTTTCCAGGATACGATTTTAAGACCA
AGGTTCCATCATAAATTTCTACATATTTTAGAtcttattttgtcaaaata
tt Run BLAST on NCBI protein sequence of TCONS_00052020-protein >TCONS_00052020-protein ID=TCONS_00052020-protein|Name=TCONS_00052020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
KSSTSSEENDYDESDVFVDRSKLAITQEMFTEEIAKLHASLSEEISNASA
EIIKQLKSENELLKEELKETKNRLTKIEIENINLQQYVRRNNVEIHGIPD
EEDEDLESKILSIADSIGIVIHKSDIEACHRLKKSKKDKNSRTIIRFVNR
KKCDILHQNKKNFKGKAAKEKLARIGINNNIFINCNLAPYTKFLWSSCKK
LFDEKLIDRFWVYNGTIFISSKENGIDVKTKIEHLSVLESTFPGYDFKTK
VPS Run BLAST on NCBI transcript from alignment at scaffold_208:216705..217506 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052020 ID=TCONS_00052020|Name=TCONS_00052020|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at scaffold_208:216705..217506 (Clytia hemisphaerica)
aatattttgacaaaataagaTCTAAAATATGTAGAAATTTATGATGGAAC
CTTGGTCTTAAAATCGTATCCTGGAAAAGTACTTTCTAACACACTCAAGT
GTTCGATTTTTGTCTTTACATCAATCCCGTTTTCTTTGCTTGAAATGAAA
ATAGTACCATTATATACCCAAAAACGATCAATTAGTTTCTCGTCAAAGAG
TTTTTTACATGAGCTCCATAGGAATTTTGTATAAGGAGCCAGATTACAGT
TAATGAAAATGTTATTATTAATACCAATTCTTGCCAGTTTCTCTTTCGCA
GCTTTTCCcttaaaattctttttgttttgatgtaagATATCACATTTCTT
TCTATTGACAAATCTAATTATTGTTCGTgagtttttgtcttttttacttt
ttttcaatcTATGACAAGCTTCTATGTCGGATTTGTGGATAACAATGCCA
ATGCTGTCGGCTAtcgataaaatttttgattccAGATCTTCGTCTTCTTC
GTCTGGGATTCCGTGAATTTCTACGTTATTTCGCCTTACATATTGCTGTA
GGTTTATATTCTCAATTTCAATCTTTGTCAGtctattttttgtttctttc
aatTCCTCTTTTAATAATTCATTCTCACTTTTTAGTTGCTTGATAATTTC
TGCACTAGCATTGGAGATTTCTTCTGAGAGAGAAGCATGTAGTTTAGCGA
TCTCTTCAGTAAACATTTCCTGGGTGATTGCTAACTTTGAACGATCAACG
AAAACATCACTTTCATCGTAATCATTTTCTTCAGAGGATGTTGAGCTTTT
CG Coding sequence (CDS) from alignment at scaffold_208:216705..217506 >TCONS_00052020 ID=TCONS_00052020|Name=TCONS_00052020|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_208:216705..217506 (Clytia hemisphaerica)
TTATGATGGAACCTTGGTCTTAAAATCGTATCCTGGAAAAGTACTTTCTA
ACACACTCAAGTGTTCGATTTTTGTCTTTACATCAATCCCGTTTTCTTTG
CTTGAAATGAAAATAGTACCATTATATACCCAAAAACGATCAATTAGTTT
CTCGTCAAAGAGTTTTTTACATGAGCTCCATAGGAATTTTGTATAAGGAG
CCAGATTACAGTTAATGAAAATGTTATTATTAATACCAATTCTTGCCAGT
TTCTCTTTCGCAGCTTTTCCcttaaaattctttttgttttgatgtaagAT
ATCACATTTCTTTCTATTGACAAATCTAATTATTGTTCGTgagtttttgt
cttttttactttttttcaatcTATGACAAGCTTCTATGTCGGATTTGTGG
ATAACAATGCCAATGCTGTCGGCTAtcgataaaatttttgattccAGATC
TTCGTCTTCTTCGTCTGGGATTCCGTGAATTTCTACGTTATTTCGCCTTA
CATATTGCTGTAGGTTTATATTCTCAATTTCAATCTTTGTCAGtctattt
tttgtttctttcaatTCCTCTTTTAATAATTCATTCTCACTTTTTAGTTG
CTTGATAATTTCTGCACTAGCATTGGAGATTTCTTCTGAGAGAGAAGCAT
GTAGTTTAGCGATCTCTTCAGTAAACATTTCCTGGGTGATTGCTAACTTT
GAACGATCAACGAAAACATCACTTTCATCGTAATCATTTTCTTCAGAGGA
TGTTGAGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052020-exon-scaffold_208-1491911889:216705..217506 | TCONS_00052020-exon-scaffold_208-1491911889:216705..217506 | Clytia hemisphaerica | exon |
| TCONS_00052020-exon-scaffold_208-1510915933:216705..217506 | TCONS_00052020-exon-scaffold_208-1510915933:216705..217506 | Clytia hemisphaerica | exon |
| TCONS_00052020-exon-scaffold_208-1575043694:216705..217506 | TCONS_00052020-exon-scaffold_208-1575043694:216705..217506 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:216705..217506 . |
Blast
The following BLAST results are available for this feature:
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