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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052006 ID=TCONS_00052006|Name=TCONS_00052006|organism=Clytia hemisphaerica|type=transcript|length=2118bp
GATTAATAAATTTTGCTTTCCGATATTATGTGTTAAGTGAGCGAATGAAG
GTCGTAAACCAAACAAACTAAcatattttcttaaaacaattaaagtgaat
tcaATAAATAAGGCAACACCAGTTATACTTATCATCGTAAATAAAACCCA
TATACACTTTTTCACTGTCGTACGTGGAGTTATGTTTTTTTGACAACATC
AACTGCTGCAAAGacgtttgtttttcttttgcatGTGATGCACATTTTAT
GGCCATCCATTCGCCCGCCATACGCCTTCTCGTTATTGATCAATTACGGG
CGTGAGATATTGAACGGAATCACTTAATTTTGCAATCGATTTCAATGCTG
GAAAGAcctgttttgaattttggaatCATCAAGTTTTTCTGAATTTCTTT
TGGGTAAAAAAAAAGGCTAAATATtgcttttttttactttgtactttttt
ttttttatttaagacaTCCTTAAAAACATGGTCAGCCTGAGAATTAACCA
AAGTTGTCCAAAATTATATGAATCCATATAAAGTTTGCGTAGTTCCAGTA
ATTGGTCGAATTTTCAACTttaaatcacaacaacattttaAGCTGAGGGT
AcaacaactttttaaaaaatttagagaATTTTGTTCGGAAAACTTATATG
AAGAGCTTAAACATCCCTGCTTACTAGTAAATATCTTGAATGGATGTCTA
TAGAAGTACCTTAAAGGTATGATCAGCAATCAACACTGTAGCTTGCAATG
ATGCCATACTTGGTCTAATACATCTTTCATttaattgaaactaaaatttg
aatcaatcttccaatgCATCTGTTTTGATCAGCAATTCCAATTGTCAACT
TGTTGTCTCCACTTGCATATCGAATACATCATATGCATTTTAATCGGAAG
AAGTCTGTGGTATGTTTTCtggctctctctctctctccacAACTTCTATC
CTCATATCCACCCCTGACTCTTCTTCTCTATGATCTTCTTCTACTGTTTT
ATCTCTTCTCCCACCGTTGTACTCTTTCAGCTTTGCCTCGAtcatttttt
ttgcttccacCAGGTTGGCCTCTCGACCCCTCTTTGTTCTTTTATTTTCG
ATTATcaagttcaaaattttcaactttcaaagaGCAACCTTTTACTTGAT
ATGtcgaagaaactttttttttggtattttctcgagattttatcattagc
tcTTTTCATCATTAGTTGGATGTCGAAAATGTTGGCTTTCGTCTCTTACC
CCTGGTTTGTTTGTCTGATAATAGAAGAATCGTTAGGTATGGGTTGTTCG
ACGATATTGGATGGTCAACATCCCCATAACCATAACAAGAACATCTGCAC
CTCTCCAAAGCCAGAAATCTGTGGTATGTCTTCTGGCTCTCTCTCAACAA
CTTCCACCCTCATATCTACCCCTGTCTCGTTTCTTCTCTATGATCTTCTT
CTCCTGTTTGGGCCGTCCACACAGTACGTAcacactaaaatgtcgaaaat
cgagtacccctcCCCCCATCTACGCAAGCGTactacgcaaatggctatac
cccctggtaagtacgtactttttcattcaccccctccccctcggttgaag
aaaatttcgaattcaaatcgtttggttcgaacctttatttcatacatgaa
actcaatgtttattaagaagACCCCCTTCACCTCTTAGTGcatacgtact
atgtggacggccccttttATCTCTTCTCATCGTCGTACTCTTTCAGCTCC
TCgatcatttttttgtttccgCCAGGTCGGCCTCTCGACCCCTCTtcgtt
gttttgttttcaattaggATGCTCAAAATTTTGAATACCTCGTGTACGTC
ACCCTGAagggaaaaagaaaagaaatagaaatatgAATTTTGGgaagatt
aaaatatttttccgccGGTTTGGCCTCTCGCCCGCTCTTTGTTGATTTGT
TGTCCATTGATTTGATTAATTCTATAAGAATATGAACAAAGCGCAATGCT
CTGTGAAGGGTAATCCTCAAATTGTTATAAAAACCTACATACTTGAGATT
ACATTTAGATATAACCGCATATATGAGGCAATTTAGATGATATATCAGTC
AATGAGGTTTTTGCCCGG Run BLAST on NCBI transcript from alignment at scaffold_208:43917..46034 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052006 ID=TCONS_00052006|Name=TCONS_00052006|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at scaffold_208:43917..46034 (Clytia hemisphaerica)
CCGGGCAAAAACCTCATTGACTGATATATCATCTAAATTGCCTCATATAT
GCGGTTATATCTAAATGTAATCTCAAGTATGTAGGTTTTTATAACAATTT
GAGGATTACCCTTCACAGAGCATTGCGCTTTGTTCATATTCTTATAGAAT
TAATCAAATCAATGGACAACAAATCAACAAAGAGCGGGCGAGAGGCCAAA
CCggcggaaaaatattttaatcttcCCAAAATTcatatttctatttcttt
tctttttccctTCAGGGTGACGTACACGAGGTATTCAAAATTTTGAGCAT
cctaattgaaaacaaaacaacgaAGAGGGGTCGAGAGGCCGACCTGGcgg
aaacaaaaaaatgatcGAGGAGCTGAAAGAGTACGACGATGAGAAGAGAT
aaaaggggccgtccacatagtacgtatgCACTAAGAGGTGAAGGGGGTct
tcttaataaacattgagtttcatgtatgaaataaaggttcgaaccaaacg
atttgaattcgaaattttcttcaaccgagggggagggggtgaatgaaaaa
gtacgtacttaccagggggtatagccatttgcgtagtACGCTTGCGTAGA
TGGGGGgaggggtactcgattttcgacattttagtgtgTACGTACTGTGT
GGACGGCCCAAACAGGAGAAGAAGATCATAGAGAAGAAACGAGACAGGGG
TAGATATGAGGGTGGAAGTTGTTGAGAGAGAGCCAGAAGACATACCACAG
ATTTCTGGCTTTGGAGAGGTGCAGATGTTCTTGTTATGGTTATGGGGATG
TTGACCATCCAATATCGTCGAACAACCCATACCTAACGATTCTTCTATTA
TCAGACAAACAAACCAGGGGTAAGAGACGAAAGCCAACATTTTCGACATC
CAACTAATGATGAAAAgagctaatgataaaatctcgagaaaataccaaaa
aaaaagtttcttcgaCATATCAAGTAAAAGGTTGCtctttgaaagttgaa
aattttgaacttgATAATCGAAAATAAAAGAACAAAGAGGGGTCGAGAGG
CCAACCTGgtggaagcaaaaaaaatgaTCGAGGCAAAGCTGAAAGAGTAC
AACGGTGGGAGAAGAGATAAAACAGTAGAAGAAGATCATAGAGAAGAAGA
GTCAGGGGTGGATATGAGGATAGAAGTTgtggagagagagagagagccaG
AAAACATACCACAGACTTCTTCCGATTAAAATGCATATGATGTATTCGAT
ATGCAAGTGGAGACAACAAGTTGACAATTGGAATTGCTGATCAAAACAGA
TGcattggaagattgattcaaattttagtttcaattaaATGAAAGATGTA
TTAGACCAAGTATGGCATCATTGCAAGCTACAGTGTTGATTGCTGATCAT
ACCTTTAAGGTACTTCTATAGACATCCATTCAAGATATTTACTAGTAAGC
AGGGATGTTTAAGCTCTTCATATAAGTTTTCCGAACAAAATtctctaaat
tttttaaaaagttgttgTACCCTCAGCTtaaaatgttgttgtgatttaaA
GTTGAAAATTCGACCAATTACTGGAACTACGCAAACTTTATATGGATTCA
TATAATTTTGGACAACTTTGGTTAATTCTCAGGCTGACCATGTTTTTAAG
GAtgtcttaaataaaaaaaaaaaagtacaaagtaaaaaaaagcaATATTT
AGCCTTTTTTTTTACCCAAAAGAAATTCAGAAAAACTTGATGattccaaa
attcaaaacaggTCTTTCCAGCATTGAAATCGATTGCAAAATTAAGTGAT
TCCGTTCAATATCTCACGCCCGTAATTGATCAATAACGAGAAGGCGTATG
GCGGGCGAATGGATGGCCATAAAATGTGCATCACatgcaaaagaaaaaca
aacgtCTTTGCAGCAGTTGATGTTGTCAAAAAAACATAACTCCACGTACG
ACAGTGAAAAAGTGTATATGGGTTTTATTTACGATGATAAGTATAACTGG
TGTTGCCTTATTTATtgaattcactttaattgttttaagaaaatatgTTA
GTTTGTTTGGTTTACGACCTTCATTCGCTCACTTAACACATAATATCGGA
AAGCAAAATTTATTAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052006-exon-scaffold_208-1491911889:43917..46034 | TCONS_00052006-exon-scaffold_208-1491911889:43917..46034 | Clytia hemisphaerica | exon |
| TCONS_00052006-exon-scaffold_208-1510915933:43917..46034 | TCONS_00052006-exon-scaffold_208-1510915933:43917..46034 | Clytia hemisphaerica | exon |
| TCONS_00052006-exon-scaffold_208-1575043694:43917..46034 | TCONS_00052006-exon-scaffold_208-1575043694:43917..46034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:43917..46034 . |
Blast
The following BLAST results are available for this feature:
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