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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051996 ID=TCONS_00051996|Name=TCONS_00051996|organism=Clytia hemisphaerica|type=transcript|length=1400bp
tgaaaaatcaaatgaagATCAAGAAAAAACTTCCCTTTGTCAGATGGGAG
ATGAATCAGAGAAATGACAAGCTACCGCTCAAATCCACAGGAACTCCGTA
TATCTGGGTTGGAACTAAAAACTATATATGCCATCAAGGCAAAGATAAGA
ACATTCGAAGAAAAGAAAAGCTAAAAGGACAAGCTGCAGCGAATTTTGCC
AGCAAAGGAGATCATCCCCAATGCTCCAAAGTGAGAAGAAACATTCGCCc
tacgaaaaaaaaacattgttcgGTTAGTTTCGTAgttaaaaaactatttt
tattccTGAATATGCCATTGCCAAAGACACCAAGTCCAATAGAACAAAAG
CTACTAATCTGCTTAAAAAGAAGCTGGGTGAAATTGTCTCAGCCGacaat
caaaatgaaatgtGTGCAACGGAACTTTCTACACTGAACTTTGTGACATC
TTTCCCAGATGCTATGAAATCTAGACTTCAGCATCGTGTTCATAATATTG
GGCGTGCAGCTGGTTTCAGTGAAAGATTGGATGATAAAGTTGCCTCGTac
ttgagaggattgatattaACGGGACACACACGAACTCGTGAGCTACGCTC
GCGGGCAAAAGAATTTGTTGAGGATACCTTAATGAAGAAAGGAGAGATCA
ACCCTACAGACGTATCAATGTCAAGAAAGAGGTTTTACCCTAGCCGCATA
ATAAGTCCGCAACCTTGTTACGTCAGTCCGGCTCAAAAATCAGTACAGCA
AGTTTGATCAGGCTAATTTGTTGGTTGAAGCTGAAAAGTGGCGAAATTGG
GCTGATGTTCTTTTTACACCAAGAACTGAGAGCAACAAGCCGAAGAAAGT
TCAAGTAAAAAAGCAACCCAACGATGAGAGTGAACATTGTGCGTGACCCC
ACGTCCATCCATTACGATGAAAGTTGTATGCGGGATCATCTCGCAAAATA
GCTGAAGGAGAAGCATCTGGAAAGGTTCCCGATGTTAACGAAGATAATCA
GGTCAAAATGTTCTAGCCGTTTAATATTCATTGAATAGTTACTGTGTGTG
TCGGGACATTTTTATTGAATCGGAGGTGGAAACAAAGAATGGAAGTTTTA
TGGCTATGTTCTCCATATGCGATGAGTGGTATCACAGAGAATGCCTCAAC
ATACctgtgaaatattttaaatcagAGGCTTTGGCCAAAACATGGAGATG
TACCAGTTGTTTTtagttttacatttttatacccaattttttatACTTGG
TTAACTctgtattttcttttgaaattagattttgactatttttgaagCTA
TATTACAACAGTTTGAATCCATTGTTTCCATGCATTTCAGATAAACTTCT
GTATTATAATCTTTTAGCTTGCTCAgtaatcaattttgattttgccATGA Run BLAST on NCBI protein sequence of TCONS_00051996-protein >TCONS_00051996-protein ID=TCONS_00051996-protein|Name=TCONS_00051996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
KNQMKIKKKLPFVRWEMNQRNDKLPLKSTGTPYIWVGTKNYICHQGKDKN
IRRKEKLKGQAAANFASKGDHPQCSKVRRNIRPTKKKHCSVSFVVKKLFL
FLNMPLPKTPSPIEQKLLICLKRSWVKLSQPTIKMKCVQRNFLH Run BLAST on NCBI transcript from alignment at scaffold_208:96021..97646- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051996 ID=TCONS_00051996|Name=TCONS_00051996|organism=Clytia hemisphaerica|type=transcript|length=1626bp|location=Sequence derived from alignment at scaffold_208:96021..97646- (Clytia hemisphaerica)
TGAAAAATCAAATGAAGATCAAGAAAAAACTTCCCTTTGTCAGATGGGAG
ATGAATCAGAGAAATGACAAGCTACCGCTCAAATCCACAGGAACTCCGTA
TATCTGGGTTGGAACTAAAAACTATATATGCCATCAAGGCAAAGATAAGA
ACATTCGAAGAAAAGAAAAGCTAAAAGGACAAGCTGCAGCGAATTTTGCC
AGCAAAGGAGATCATCCCCAATGCTCCAAAGTGAGAAGAAACATTCGCCC
TACGAAAAAAAAACATTGTTCGGTTAGTTTCGTAGTTAAAAAACTATTTT
TATTCCTGAATATGCCATTGCCAAAGACACCAAGTCCAATAGAACAAAAG
CTACTAATCTGCTTAAAAAGAAGCTGGGTGAAATTGTCTCAGCCGACAAT
CAAAATGAAATGTGTGCAACGGAACTTTCTACACTGAACTTTGTGACATC
TTTCCCAGATGCTATGAAATCTAGACTTCAGCATCGTGTTCATAATATTG
GGCGTGCAGCTGGTTTCAGTGAAAGATTGGATGATAAAGTTGCCTCGTAC
TTGAGAGGATTGATATTAACGGGACACACACGAACTCGTGAGCTACGCTC
GCGGGCAAAAGAATTTGTTGAGGATACCTTAATGAAGAAAGGAGAGATCA
ACCCTACAGACGTATCAATGTCAAGAAAGAGGTTTTACCCTAGCCGCATA
ATAAGTCCGCAACCTTGTTACGTCAGTCCGGCTCAAAAATCAGTACAGCA
AGTTTGATCAGGCTAATTTGTTGGTTGAAGCTGAAAAGTGGCGAAATTGG
GCTGATGTTCTTTTTACACCAAGGTTTGTTATGAACATCTACTTCTTATG
GATGTAAAAAGTGAGAAGAGAAAAGAAATAGGAAAAAAACTTTGTTAGAT
AAAATAACATAACGTTTAGAATTAAGAACTATTCTCGTTTTATGAAACAT
TTGATTACATACAAGTAAAATAAAAACAAACAAGGGGGAAATAATATTGA
AAAGAGAAAACAGTCTTGAAACTAAATTCTATGGTGCTTTGTGATTTAGA
ACTGAGAGCAACAAGCCGAAGAAAGTTCAAGTAAAAAAGCAACCCAACGA
TGAGAGTGAACATTGTGCGTGACCCCACGTCCATCCATTACGATGAAAGT
TGTATGCGGGATCATCTCGCAAAATAGCTGAAGGAGAAGCATCTGGAAAG
GTTCCCGATGTTAACGAAGATAATCAGGTCAAAATGTTCTAGCCGTTTAA
TATTCATTGAATAGTTACTGTGTGTGTCGGGACATTTTTATTGAATCGGA
GGTGGAAACAAAGAATGGAAGTTTTATGGCTATGTTCTCCATATGCGATG
AGTGGTATCACAGAGAATGCCTCAACATACCTGTGAAATATTTTAAATCA
GAGGCTTTGGCCAAAACATGGAGATGTACCAGTTGTTTTTAGTTTTACAT
TTTTATACCCAATTTTTTATACTTGGTTAACTCTGTATTTTCTTTTGAAA
TTAGATTTTGACTATTTTTGAAGCTATATTACAACAGTTTGAATCCATTG
TTTCCATGCATTTCAGATAAACTTCTGTATTATAATCTTTTAGCTTGCTC
AGTAATCAATTTTGATTTTGCCATGA Coding sequence (CDS) from alignment at scaffold_208:96021..97646- >TCONS_00051996 ID=TCONS_00051996|Name=TCONS_00051996|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_208:96021..97646- (Clytia hemisphaerica)
AAAAATCAAATGAAGATCAAGAAAAAACTTCCCTTTGTCAGATGGGAGAT
GAATCAGAGAAATGACAAGCTACCGCTCAAATCCACAGGAACTCCGTATA
TCTGGGTTGGAACTAAAAACTATATATGCCATCAAGGCAAAGATAAGAAC
ATTCGAAGAAAAGAAAAGCTAAAAGGACAAGCTGCAGCGAATTTTGCCAG
CAAAGGAGATCATCCCCAATGCTCCAAAGTGAGAAGAAACATTCGCCCTA
CGAAAAAAAAACATTGTTCGGTTAGTTTCGTAGTTAAAAAACTATTTTTA
TTCCTGAATATGCCATTGCCAAAGACACCAAGTCCAATAGAACAAAAGCT
ACTAATCTGCTTAAAAAGAAGCTGGGTGAAATTGTCTCAGCCGACAATCA
AAATGAAATGTGTGCAACGGAACTTTCTACACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051996-exon-scaffold_208-1575043694:96824..97646 | TCONS_00051996-exon-scaffold_208-1575043694:96824..97646 | Clytia hemisphaerica | exon |
| TCONS_00051996-exon-scaffold_208-1575043694:96021..96597 | TCONS_00051996-exon-scaffold_208-1575043694:96021..96597 | Clytia hemisphaerica | exon |
| TCONS_00051996-exon-scaffold_208-1510915933:96824..97646 | TCONS_00051996-exon-scaffold_208-1510915933:96824..97646 | Clytia hemisphaerica | exon |
| TCONS_00051996-exon-scaffold_208-1510915933:96021..96597 | TCONS_00051996-exon-scaffold_208-1510915933:96021..96597 | Clytia hemisphaerica | exon |
| TCONS_00051996-exon-scaffold_208-1491911889:96824..97646 | TCONS_00051996-exon-scaffold_208-1491911889:96824..97646 | Clytia hemisphaerica | exon |
| TCONS_00051996-exon-scaffold_208-1491911889:96021..96597 | TCONS_00051996-exon-scaffold_208-1491911889:96021..96597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:96021..97646 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029309 | CaRF |
Blast
The following BLAST results are available for this feature:
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