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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051984 ID=TCONS_00051984|Name=TCONS_00051984|organism=Clytia hemisphaerica|type=transcript|length=1391bp
TAGAAATCtgttaaaatgtaaaaatgccaAAAGAGGCTAAACCTGATCAC
ATTTGGCGAGAGGAGCTTGCTGCTTATGCAATATCAAAAAAGCTAAAGCC
TGGCTCGCATCCTCGAAGAGAGTCTAAATGGGGCAAGGAGAAAGCAAAGA
TTGACGATTGCCCAGCCTTTCAGGGTGCTGCTACTGATGTTTTTGGGAGA
CCAATTAAGTGTAACTGTGGATATCAGCACAAAAAGTCATATCCAAAACG
CATGTCTGCTTCTTCGACAGCACCTAAACTGTTGTCATCACCACCAGTGA
CTTTACCAAACCATTTTCCTACGGTAAACATCCAGTCGCAGAGCCTTAAA
CAGCTTTCATCCACACTGCCGAAGCGATCTTTCAAGCATGCGTCACCCAA
TTCTTACCCACCTTTTCACAAGCCCAAACTGACTCCTGTACCAGAGGCTG
TCCGTAAGCTAATTCTTGACTCAACACCGGCGATGGTTGCTAAGCCTCAA
GACGCACCACAAACACAACACACGGCGATGGTTGCTAAGCCTCAAGATGC
ACCACAAACACAACAAACGGCGATGGTTGCTAAGCCTCAAGACGCACCGC
AAACACAACAAACGACAATGGTCGCAGAGTCGCGAAACGCACCACTTCCA
CAACAAACTACATTTTTTACAGAATCAGAAATAGACGCACCACCTTCTTC
ACCTCCTGATGTTCGTGCTTCACTGGGTACTGATCGTGAGAGTTTGTGCA
CAATAACATCTGTCAAACAAAAGGAGCCGCCACCAAGCCCCAGCAAGCCC
CGTCAGGAAAATGAATATGCTGCCAGGCTACCAGCAAAGTGGAAGGTCAC
CATTGACGAGACAGACCAAGGATGGATTGGCCATGCCCTTTTCCTGAATA
AAGAACATGGCTTCAGGGAAGATTTGCGGAATTGGTATTACCCTCCATCC
AAAGCATTCGGCNTGGATTGGCCATGCCCTTTTCCTGAATAAAGAACATG
GCTTGAGGGAAGATTTGCCGAATTGGTATTACCCTCCATCCAAAGCATTC
GGCGTGAAGAAACCCACACCTGACGGGTATTTTAGACGAAATCTCTTTTT
GTGGATGCCAGTCAAGATGTGGGACTGGAAATTTACATGCATACTTTATC
CAAAGTGCAAAAGGATTATGTGGCACAAGGGTACATATGAAACAGTCCGA
AAGTTGCTTGATCTCTCATGTTATTATTACATCGCAACAGAGCATCTCGA
ATGTCCTTGTGGGAGTAAGGTTCCAGCTTGGGATCATCGCATATTGGAAT
CAATGCCATTCGTTACGAAACAAACCTTTCCTGCATGTCTGACGTACCGG
TATGCACTTGACAAATCCTTGCTGACCATGCTTCGTGCCCG Run BLAST on NCBI protein sequence of TCONS_00051984-protein >TCONS_00051984-protein ID=TCONS_00051984-protein|Name=TCONS_00051984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MPKEAKPDHIWREELAAYAISKKLKPGSHPRRESKWGKEKAKIDDCPAFQ
GAATDVFGRPIKCNCGYQHKKSYPKRMSASSTAPKLLSSPPVTLPNHFPT
VNIQSQSLKQLSSTLPKRSFKHASPNSYPPFHKPKLTPVPEAVRKLILDS
TPAMVAKPQDAPQTQHTAMVAKPQDAPQTQQTAMVAKPQDAPQTQQTTMV
AESRNAPLPQQTTFFTESEIDAPPSSPPDVRASLGTDRESLCTITSVKQK
EPPPSPSKPRQENEYAARLPAKWKVTIDETDQGWIGHALFLNKEHGFRED
LRNWYYPPSKAFGXDWPCPFPE Run BLAST on NCBI transcript from alignment at scaffold_208:302478..304050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051984 ID=TCONS_00051984|Name=TCONS_00051984|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at scaffold_208:302478..304050+ (Clytia hemisphaerica)
TAGAAATCtgttaaaatgtaaaaatgccaAAAGAGGCTAAACCTGATCAC
ATTTGGCGAGAGGAGCTTGCTGCTTATGCAATATCAAAAAAGCTAAAGCC
TGGCTCGCATCCTCGAAGAGAGTCTAAATGGGGCAAGGAGAAAGCAAAGA
TTGACGATTGCCCAGCCTTTCAGGGTGCTGCTACTGATGTTTTTGGGAGA
CCAATTAAGTGTAACTGTGGATATCAGCACAAAAAGTCATATCCAAAACG
CATGTCTGCTTCTTCGACAGCACCTAAACTGTTGTCATCACCACCAGTGA
CTTTACCAAACCATTTTCCTACGGTAAACATCCAGGTATATATTATACAT
AATATAAtgtagaatttagaaaataaaataacattATATAGTACTAACAG
CCTAAAGTCTATAATAATATGTATAACTCTAATATATAATTACTTATATA
AAACTCTAAGATAAATaattatataaataaaaataaaagtcttCTGTTCT
GTTTGTTGAATTTTCAGTCGCAGAGCCTTAAACAGCTTTCATCCACACTG
CCGAAGCGATCTTTCAAGCATGCGTCACCCAATTCTTACCCACCTTTTCA
CAAGCCCAAACTGACTCCTGTACCAGAGGCTGTCCGTAAGCTAATTCTTG
ACTCAACACCGGCGATGGTTGCTAAGCCTCAAGACGCACCACAAACACAA
CACACGGCGATGGTTGCTAAGCCTCAAGATGCACCACAAACACAACAAAC
GGCGATGGTTGCTAAGCCTCAAGACGCACCGCAAACACAACAAACGACAA
TGGTCGCAGAGTCGCGAAACGCACCACTTCCACAACAAACTACATTTTTT
ACAGAATCAGAAATAGACGCACCACCTTCTTCACCTCCTGATGTTCGTGC
TTCACTGGGTACTGATCGTGAGAGTTTGTGCACAATAACATCTGTCAAAC
AAAAGGAGCCGCCACCAAGCCCCAGCAAGCCCCGTCAGGAAAATGAATAT
GCTGCCAGGCTACCAGCAAAGTGGAAGGTCACCATTGACGAGACAGACCA
AGGATGGATTGGCCATGCCCTTTTCCTGAATAAAGAACATGGCTTCAGGG
AAGATTTGCGGAATTGGTATTACCCTCCATCCAAAGCATTCGGCNTGGAT
TGGCCATGCCCTTTTCCTGAATAAAGAACATGGCTTGAGGGAAGATTTGC
CGAATTGGTATTACCCTCCATCCAAAGCATTCGGCGTGAAGAAACCCACA
CCTGACGGGTATTTTAGACGAAATCTCTTTTTGTGGATGCCAGTCAAGAT
GTGGGACTGGAAATTTACATGCATACTTTATCCAAAGTGCAAAAGGATTA
TGTGGCACAAGGGTACATATGAAACAGTCCGAAAGTTGCTTGATCTCTCA
TGTTATTATTACATCGCAACAGAGCATCTCGAATGTCCTTGTGGGAGTAA
GGTTCCAGCTTGGGATCATCGCATATTGGAATCAATGCCATTCGTTACGA
AACAAACCTTTCCTGCATGTCTGACGTACCGGTATGCACTTGACAAATCC
TTGCTGACCATGCTTCGTGCCCG Coding sequence (CDS) from alignment at scaffold_208:302478..304050+ >TCONS_00051984 ID=TCONS_00051984|Name=TCONS_00051984|organism=Clytia hemisphaerica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_208:302478..304050+ (Clytia hemisphaerica)
atgccaAAAGAGGCTAAACCTGATCACATTTGGCGAGAGGAGCTTGCTGC
TTATGCAATATCAAAAAAGCTAAAGCCTGGCTCGCATCCTCGAAGAGAGT
CTAAATGGGGCAAGGAGAAAGCAAAGATTGACGATTGCCCAGCCTTTCAG
GGTGCTGCTACTGATGTTTTTGGGAGACCAATTAAGTGTAACTGTGGATA
TCAGCACAAAAAGTCATATCCAAAACGCATGTCTGCTTCTTCGACAGCAC
CTAAACTGTTGTCATCACCACCAGTGACTTTACCAAACCATTTTCCTACG
GTAAACATCCAGTCGCAGAGCCTTAAACAGCTTTCATCCACACTGCCGAA
GCGATCTTTCAAGCATGCGTCACCCAATTCTTACCCACCTTTTCACAAGC
CCAAACTGACTCCTGTACCAGAGGCTGTCCGTAAGCTAATTCTTGACTCA
ACACCGGCGATGGTTGCTAAGCCTCAAGACGCACCACAAACACAACACAC
GGCGATGGTTGCTAAGCCTCAAGATGCACCACAAACACAACAAACGGCGA
TGGTTGCTAAGCCTCAAGACGCACCGCAAACACAACAAACGACAATGGTC
GCAGAGTCGCGAAACGCACCACTTCCACAACAAACTACATTTTTTACAGA
ATCAGAAATAGACGCACCACCTTCTTCACCTCCTGATGTTCGTGCTTCAC
TGGGTACTGATCGTGAGAGTTTGTGCACAATAACATCTGTCAAACAAAAG
GAGCCGCCACCAAGCCCCAGCAAGCCCCGTCAGGAAAATGAATATGCTGC
CAGGCTACCAGCAAAGTGGAAGGTCACCATTGACGAGACAGACCAAGGAT
GGATTGGCCATGCCCTTTTCCTGAATAAAGAACATGGCTTCAGGGAAGAT
TTGCGGAATTGGTATTACCCTCCATCCAAAGCATTCGGCNTGGATTGGCC
ATGCCCTTTTCCTGAATAAatgccaAAAGAGGCTAAACCTGATCACATTT
GGCGAGAGGAGCTTGCTGCTTATGCAATATCAAAAAAGCTAAAGCCTGGC
TCGCATCCTCGAAGAGAGTCTAAATGGGGCAAGGAGAAAGCAAAGATTGA
CGATTGCCCAGCCTTTCAGGGTGCTGCTACTGATGTTTTTGGGAGACCAA
TTAAGTGTAACTGTGGATATCAGCACAAAAAGTCATATCCAAAACGCATG
TCTGCTTCTTCGACAGCACCTAAACTGTTGTCATCACCACCAGTGACTTT
ACCAAACCATTTTCCTACGGTAAACATCCAGTCGCAGAGCCTTAAACAGC
TTTCATCCACACTGCCGAAGCGATCTTTCAAGCATGCGTCACCCAATTCT
TACCCACCTTTTCACAAGCCCAAACTGACTCCTGTACCAGAGGCTGTCCG
TAAGCTAATTCTTGACTCAACACCGGCGATGGTTGCTAAGCCTCAAGACG
CACCACAAACACAACACACGGCGATGGTTGCTAAGCCTCAAGATGCACCA
CAAACACAACAAACGGCGATGGTTGCTAAGCCTCAAGACGCACCGCAAAC
ACAACAAACGACAATGGTCGCAGAGTCGCGAAACGCACCACTTCCACAAC
AAACTACATTTTTTACAGAATCAGAAATAGACGCACCACCTTCTTCACCT
CCTGATGTTCGTGCTTCACTGGGTACTGATCGTGAGAGTTTGTGCACAAT
AACATCTGTCAAACAAAAGGAGCCGCCACCAAGCCCCAGCAAGCCCCGTC
AGGAAAATGAATATGCTGCCAGGCTACCAGCAAAGTGGAAGGTCACCATT
GACGAGACAGACCAAGGATGGATTGGCCATGCCCTTTTCCTGAATAAAGA
ACATGGCTTCAGGGAAGATTTGCGGAATTGGTATTACCCTCCATCCAAAG
CATTCGGCNTGGATTGGCCATGCCCTTTTCCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051984-exon-scaffold_208-1491911889:302478..302812 | TCONS_00051984-exon-scaffold_208-1491911889:302478..302812 | Clytia hemisphaerica | exon |
| TCONS_00051984-exon-scaffold_208-1510915933:302478..302812 | TCONS_00051984-exon-scaffold_208-1510915933:302478..302812 | Clytia hemisphaerica | exon |
| TCONS_00051984-exon-scaffold_208-1575043694:302478..302812 | TCONS_00051984-exon-scaffold_208-1575043694:302478..302812 | Clytia hemisphaerica | exon |
| TCONS_00051984-exon-scaffold_208-1491911889:302995..304050 | TCONS_00051984-exon-scaffold_208-1491911889:302995..304050 | Clytia hemisphaerica | exon |
| TCONS_00051984-exon-scaffold_208-1510915933:302995..304050 | TCONS_00051984-exon-scaffold_208-1510915933:302995..304050 | Clytia hemisphaerica | exon |
| TCONS_00051984-exon-scaffold_208-1575043694:302995..304050 | TCONS_00051984-exon-scaffold_208-1575043694:302995..304050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:302478..304050 + |
Blast
The following BLAST results are available for this feature:
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