TCONS_00051973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051973
Unique NameTCONS_00051973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051973 ID=TCONS_00051973|Name=TCONS_00051973|organism=Clytia hemisphaerica|type=transcript|length=392bp
gctttacatttcaacccagctggcacacaacgttgttttaacgttcgaat
aacgttatatgggcgtcatgaatgtcacatggacgttgttttgacgttgt
gtgccgtctgggaaGGCATCGCATgcgtgtttttgtttttgaattcgTTG
ATTTTTTTGCGCAGCCTAGAATTCACCTACCCTACAATTCACCTACAAGC
TACGATCAGTGGAATGATATATTGGCACCAGCCTAAAAAAACCACTGGAT
TTTACTTACGTCCCTCTCTTAAATCCCCTCCCCCTAATTTCAATGGTTGA
AGAAGGCAACAGGGCTGCAAACTCAATCATTGAAGCTTAGGGGGAGGGAA
ATAAGTTGTAACATTAAAATTCAGTGTCTACTGCCAAATATT
Run BLAST on NCBI

protein sequence of TCONS_00051973-protein

>TCONS_00051973-protein ID=TCONS_00051973-protein|Name=TCONS_00051973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
ALHFNPAGTQRCFNVRITLYGRHECHMDVVLTLCAVWEGIACVFLFLNSL
IFLRSLEFTYPTIHLQATISGMIYWHQPKKTTGFYLRPSLKSPPPNFNG
Run BLAST on NCBI

transcript from alignment at scaffold_207:1449..1840

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051973 ID=TCONS_00051973|Name=TCONS_00051973|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at scaffold_207:1449..1840 (Clytia hemisphaerica)
AATATTTGGCAGTAGACACTGAATTTTAATGTTACAACTTATTTCCCTCC
CCCTAAGCTTCAATGATTGAGTTTGCAGCCCTGTTGCCTTCTTCAACCAT
TGAAATTAGGGGGAGGGGATTTAAGAGAGGGACGTAAGTAAAATCCAGTG
GTTTTTTTAGGCTGGTGCCAATATATCATTCCACTGATCGTAGCTTGTAG
GTGAATTGTAGGGTAGGTGAATTCTAGGCTGCGCAAAAAAATCAAcgaat
tcaaaaacaaaaacacgcATGCGATGCCttcccagacggcacacaacgtc
aaaacaacgtccatgtgacattcatgacgcccatataacgttattcgaac
gttaaaacaacgttgtgtgccagctgggttgaaatgtaaagc

Coding sequence (CDS) from alignment at scaffold_207:1449..1840

>TCONS_00051973 ID=TCONS_00051973|Name=TCONS_00051973|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_207:1449..1840 (Clytia hemisphaerica)
TCAACCATTGAAATTAGGGGGAGGGGATTTAAGAGAGGGACGTAAGTAAA
ATCCAGTGGTTTTTTTAGGCTGGTGCCAATATATCATTCCACTGATCGTA
GCTTGTAGGTGAATTGTAGGGTAGGTGAATTCTAGGCTGCGCAAAAAAAT
CAAcgaattcaaaaacaaaaacacgcATGCGATGCCttcccagacggcac
acaacgtcaaaacaacgtccatgtgacattcatgacgcccatataacgtt
attcgaacgttaaaacaacgttgtgtgccagctgggttgaaatgtaaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032898XLOC_032898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051973-exon-scaffold_207-1491911889:1449..1840TCONS_00051973-exon-scaffold_207-1491911889:1449..1840Clytia hemisphaericaexon
TCONS_00051973-exon-scaffold_207-1510915933:1449..1840TCONS_00051973-exon-scaffold_207-1510915933:1449..1840Clytia hemisphaericaexon
TCONS_00051973-exon-scaffold_207-1575043694:1449..1840TCONS_00051973-exon-scaffold_207-1575043694:1449..1840Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051973-proteinTCONS_00051973-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_207supercontigscaffold_207:1449..1840 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193867	0	0.497393	1.56917	0.812524	0.619783	1.49548	1.65695	0.8711	2.2517	1.08952	1.66793	0.824737	0.1724	0.220169	0.118274	0.145536	0.149169	0	0.21925	0	0	0	0.606267	0.208147	1.55668	0.839657	0	0.226837	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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