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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051970 ID=TCONS_00051970|Name=TCONS_00051970|organism=Clytia hemisphaerica|type=transcript|length=347bp
aaaaaacattcaagtaAAAAGTTTGGTGGTGATCATGTTGTTGAAACTAA
CAATAACAAAAGaaaattcAATGAACTAAAGAACACTACCAACCAGTTGA
TGAAACCGGCTTGTGAAAATCAAGTTacagaaaaatggaaaaatcatCGA
CAACCATATTTGATACTGTTGGCAAGATTTCACTATTTGATGAAgtaatt
gtaaaaattgaggaAGAAGAGTCTAATTCAATTATATGTTcatcaaatgt
tgaaaattcacttttcgatgAAGTCGTcttaaaaattgatgaagaaacTG
AAGGTGGAGATGAAAAAGgtatgtaatttttttcaattattgatAAG Run BLAST on NCBI transcript from alignment at scaffold_207:50994..57408- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051970 ID=TCONS_00051970|Name=TCONS_00051970|organism=Clytia hemisphaerica|type=transcript|length=6415bp|location=Sequence derived from alignment at scaffold_207:50994..57408- (Clytia hemisphaerica)
AAAAAACATTCAAGTAAAAAGTTTGGTGGTGATCATGTTGTTGAAACTAA
CAATAACAAAAGGTACAACATATATGTTCTAAGAAACACGTCTATACTCA
TGCTGATGAGAAACCGTTTAAAACCGCGTAAAAATAAGACAAATTACAAT
AAAAACAAATAATAACATAAAATAACACCGCTCACGGGACGCTTATACGC
GTCCCTCGTGGGCTCAGGCTAATAACTTGAAGATTTTTTGAAACCCACGG
ATGATGGTGGTGCTTTTATTCTCAGTACTTTGCGGATAATTTTGCTAAAA
ACTTGCATATTCTACCAGCTTCTCAATTGCTTTTTAAAATGTTTTAACAA
TTCTCTTGAATTTCTGTGCTTATAATACTTTGTTCTTATTGAGAAAAAAA
ACCTACCTTAAGGGAACTAATTTTGGCGGATTTGGCGAATCTAGACGAAA
TTCGCCAAAACTAGTTCCCGCCAAAATTAAATTTTTTATTTCCTTGCCTT
AACAATCCCTGAAATTCATCAAAATTTCTCAAAATAAGGCAAAATAGAAC
AGATTTTCGCTTTCATTCGCCAAAATTAGTTCCCATTAAAATTTAAAAAA
TTCACTGTTCGCCCCCGCCAAAAATAGAATTTTTTAGGATATTTGCTGCC
CGACAAAATTAGTTCCCGCCAAAAAAAGTTCCCTTAAGGTATGTCTATGT
ATTACGTTTCAGATACCGATGCTAACATTTCACTTTCTTATTACATGAAC
AAAAGAAGGAGAAGAGGCTACTGCTACCCTTTTTTAAAGGTATTTATCTT
TCGTCATTCACTTTCAGTTATGTTCCTTTTATTTTATCGGGACACGAATA
TTAAGCAAATATTCGACAAGAAAAATCGGATCTCGCAAATTATTCAGGCG
AGCTTGATTATAAGAATCACCATTAAAGCGAGACTGAATAATTTTCGATA
TCCGATTTTTCACGTTGAATATTTCGTTTATCGTTCACCAATTTGCAGAA
AACCTTTTCATTCAGTCAAGGAAAATGGTGACTTTTTCGAACTTTCTACT
ATCTTACTCAAGGATGTCAATTTCATTGTTTTTTTCCTCTTTAATTACAA
AACTTTCGAATTTCTTTTATCTTTTGTCAAAAAGAACGCTCTTTTTATCT
GTTTTTATATATGTGATATATTTAAATAATCATTTGATTAGCTCGTTGCT
ACAGAAGAGATATTTTGCTATCGGGTATCTAAAAATATTCGACTGCGTTT
TGCCTAGAGCTTCTGAAGTTCTGAAAACACCAGACATCTCAGCTTCATTT
TCAGGTAGTTTAAGCAAAATAAGAAATGAAATCTCATTACACTGTGAATG
TCAGAAACGTTCGGTAATATGCACTGTGTAAGGGTACATTTTCACCTCTC
AAGGGATGCGTTGTAAGGGTTCGATTTTGAAAGCCTTTTTTTTCGTGGCA
CATGCCGTTGTTTAGAAATTGAGTACCCCCGGGCTATTCTACATTCTACT
AATATATTGACACTGCCTCCTCTGTCAGTCGTCTTTTCTCTATCATCTTG
GCTCTTTTAATTATTCATTTATATATCTTCAGATATCTTAAGTATGTAGC
TGATGATCCTTCTGGTAGAGCACATGTTGTTGCTGACAATCATTTTCACC
TTATTTAATTTTATGTTTCTTAGAAAAACTCGTTGATTACTTTTAATGCT
AAGAAACAAGAGGAAAAAAGTTATCCGAGAACGCTCGATGTAGAAAAGTT
TCTTCTAACTCGCTTGAAGGTCGAAAAGAAATTTAACGTTTCGAAGATTT
TGCAGTGAGAACCCCAACCCCTCGTTTTCTTGGATTGGGCTCTTCCAGAA
AAAACCGTTCATAGGGGTGGAAGATATATTGCCCAGGGGTATTGAAAAAC
TCCTGAAAAACTGCCATGTCTATGGGTAAATTTTAGTGTCCAGGGGGTCG
ACTTGATGCTGTGGGTAAAAAATCGAAATGTCCAGGGGGTGATCATTGAA
AAAATAATATATCCTCCACCCCCCCCCCCCCTTTTTTTTTTTTTTTGGGT
TTTTTAAAAAAAAAAAAAACCCCCCCCCCCCGTTTTTTTGGGGTGGGCTC
TTCCAGAAAAAAATTGTGGAGGGGGGGGGGGGGGTGGAGGATATATTATT
TTTTCAATGATCAACCCCTGGACATTTCGATTTTTTACCCACAGCATCAA
GTCGACCACCTGGACACTAAAATTTACCCATAGACATGGCAGTTTTTCAG
GATTTTTTCAATACCCCTGGACAATATATCTTCCACCCCTATGAACGGTT
TTTTCTGGAAGAGCCCATTGTCAAAAATATTTTCAGCCTCACACTCAAGG
GCCGTTGCGGCATATCAAATTCGTCGTTTACTTTCGATCAGTTCCGATAG
GAAATTTTCCCGCTCCTTCAGAGCTTAAGTGTTGGCGGCCGCCATTCCGC
CATGCGAAATAAGATATAAAAAGAAAATGCAAAATGTCACGACTTCTGAT
GTCACAGATATCTTATATAAAATGCTCTCTATCTTTTCTTTGACGAAAAT
GATGCGTCGTATTTGCTGAAAGTCAACCACAGTACACTTGTTGTCACTAC
CGTAAATCTTCGAATAAGCGCCCGGGCGCTTATTTAATTTTTCAGGCTCT
AAGAGGGGCGCTTATTCAAGCGGGGCGCTTATTCGAGCGGAGCGCTTATT
TTTTTATTTCAGAAATTCGTATATCAACAAATTCCGAATCTGCTTAAACT
TAACTGTTTCAAAGGGTTGATTTTTCAAATAAGGATAAATAAAAGAAAAA
TTGGAAAAATCCAATTGACAATTTCTATCATTTTATTCTCAATCGCTTTT
TTTATAAGAATATCTTCTATAAGAATACCAGGGTGAAAATTGGCCTAAGA
ATACCTTCTAGGGTGAATTTCACAGAATTTGATAAGAATACAGTCATTTT
GTATTTGGTTAACAGAAAAAAACTGCTTCCTTTGTTAGAGATAAATTGAA
GCTTTGAGACTGTTTGAGAAAGAAAGTAATTTCTCAAATGTTCACTCAAA
GTTTAAAACTCTCAAATTGATCACTTCTCATGTTTGTACAGTAAGTCTAA
AAAAGTAAGAATGCGTTAAGAATTTTCCCCCCTCAATTTTGGCACTTTCT
TAAGAATACTTGAGCCTCATCCAAAGTACACAATTCTTATAAAAAAGTGT
GTATATATTCAAGATGGTGCATAGATTATTCCTCTGCAAGGAAGCCTTAT
TTAGTATTTTAAATAAGATATCTGTGGTTTCGACGTACACATATAAAGCA
CACGTTAGAAATTTCAAATCTCTTTAAAAAACGCATTGCTTGTATAAAAA
CAACCATGGGCACTAACAACACACTTTAGATTATGTTCATGATTATATCT
ATAAACACGCATCGTGTATTCAAACACAAGCTTTGTTATTTAAACAACAC
GACCAAATTCTAAAATAGCTTTATTTGAACACTACGTGTAAATTGACTTT
GGGACGTTAAAAAAAGATTGATTATATTATCAAGGTTCTTCTTATTTTTG
CCCTTTTATCAAAGGACAAAGACCGTTTATCATGCAAATGAGATCTATTG
CTTCTCGCTGGTAATAATTTCAATATTATATATAGGGAATTTTTCATATT
AAAAAATCAGTCATATTGGATTGCTTGAAAGTTGAGCAGATAGTCCTTAT
CGGAGTTTTTGATTCTTCTAAAAAGCGATGCATTGTGGGATTGTTTCGAG
TGTATTACAATAGAATTCCCTCGGGGAATTCCTAAGAGATTTCTATTGTA
ATACACTAGAAACAATCCCACAATGCATCGCTTTTTTAGAAAATCAAAAA
CTCCGATAAGGTCTATTGATCTTTGACGGTCGTTTCTACATTTACATTTA
CCCTTGTGCCACCCTTGTAATCCTGGATAATTAGTAAACATTTTTCTGGA
ACTTTGACAATTCTCTACTGAGTTATGAAGTTGCAACCATTGAGTTTCAA
GCCCGAAGGGCAAGAGGCGCGACTCCTGGATGGGAAATGAAACCACTTGT
TTCCCATCCAGAACGCCCGCGTGTAGCTTTAACACAAACACCGGATTGAA
ACTAAAATCTATCTAGATTTCAAAAAATGTAGTCCTCCAAAACAACGGAA
CCCCTAGATTCAATCTGTCGTCGTGATTACGGCGCGTTCTATGCGCGTTT
TGGACGGGAAATAAGTGGCTTCAATCTCTTTTGCCTGTGAAGCGTTAAAG
TTTCGCCTCTAGCCCTTTGGGATTGAAACTCAATGGTTGCAACGGTGATT
GGCAATTTTTTACCTCTTTGGACCTACCCCGGTGGGATGGAGGTCCTATA
AATTAACCTTTGTCCGTTCGGCCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTCGTTCGTTATTAGCTTTCCTCGTGATTGGC
TCATTAGTTTTTTCTGATTTTTTGCACAAAGATGTATAACTATAAACCCG
CGAATGTGACGGAGCCCGATTCTCGAAAAAAAATAATTTTGGGCCAATTT
GGGCCAAAAAACTGTTAAAAAACGGTTTTTTTGAGCTTTGTGAAAAATTG
GATCATTAACTTTTTCTGATTTTTTGCATGAAAGTAGAGTACCATCATAG
GTAAAAGATGGCTCAAGCAGATTTTTTCAAAAAAATTTTGTTGGCTCAAA
AAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATGCTTCAATGT
TCTTAGTTAAATTACTCAATTTTTTTATGAGATAGATGTTTTATTTGCTC
ACGAGGCCTTACTTTTGAAGAATGTGTGTGTTCAGTCATGAAATTTTGGT
TACTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTTATTTAT
AAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATCGGCTCTT
TGATTCTTTATTATTTTTTGCACAAAGATGCATAACTATAAACCCTCAAA
TGTGACGGAGCCCGATTTTCGAAAAGAAAAACTTTTGGGCAAATTTGGGC
CAAAAAAACAGCTAAAAAACGGTTTTTTGGACTTTGTGAAAAATTGGATC
ATTAACTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCTTCATAGGTAA
AAGATGGCTCAAACAGATTTTTTCAAAAAAATTTTGTTGGCTCCAAAAAC
GCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTT
AGCCAAATTACTCAATTTTTGATGAGATAGATGTTTTTTTTTGCTCACGA
AGTCTTGAATATGAAAGAGTATTTCAAGAGCATGAAATTTTGGTTTCTAA
ACGTTTTTTTTTATAAGAAACAAACGACTCATTTTAATAAATCGTCACTA
TTTGTGTTATGAATGATTGTTTAATGATCACGCTTATTTAGATATCAATT
ATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTT
CGCATTGAATTGACACGAATGTGGAGCAAGATTGGTCAGAGATAGGAAAA
GAAAAACATTTTTTTGCTTATATAAAACAATAGGCAGACACTGATATGAA
ATATGTGTCTGGTATGAAACAGGAACACTTATTTAAAAATAAAACCTTTA
ATCAAGTAATTTATAATCTGTTAAAGAAAATTCAATGAACTAAAGAACAC
TACCAACCAGTTGATGAAACCGGCTTGTGAAAATCAAGTTACAGAAAAAT
GGAAAAATCATCGACAACCATATTTGGTAAGGATCATGTCTTCAACGTGT
GCATTAGTTTTTCTTGCAGTTATTAACCAGTGAATTTTCGCTCATGCCGG
GTTGTTCTTAATTTTTTGAAATTTTCAGGCTTGAATGTTCTTACGATGTT
CTTATTAATACGCTTTGTTAAAAAGTTTACTTATAAAAAACTTAAAACTG
TTAAAAACAGTACTTTCTAAGTAATTTATGAAATCCAAGGCTTAGGATTT
GTTCCTTAATTTCCTCTTACGTATCGGCCAATTTTTAGACTCGTGTTCTT
ATAAAATTGTTCTTCTAAAAAAAGCGTGTACATCATCGTTTTGATTTTCA
AGAATTTCTGCTGTTTTTTCGGTTATCAATGAGGTCCCAACTGGTAAATA
AAAAGTAAAAAATCAAAACAAAAAAGTTATTTCAGCCTTAAAACCATCAT
AATACAAATTTATTTATTTTCCAATTCCAGATACTGTTGGCAAGATTTCA
CTATTTGATGAAGTAATTGTAAAAATTGAGGAAGAAGAGTCTAATTCAAT
TATATGTTCATCAAATGTTGAAAATTCACTTTTCGATGAAGTCGTCTTAA
AAATTGATGAAGAAACTGAAGGTGGAGATGAAAAAGGTATGTAATTTTTT
TCAATTATTGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051970-exon-scaffold_207-1575043694:57347..57408 | TCONS_00051970-exon-scaffold_207-1575043694:57347..57408 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1575043694:51633..51732 | TCONS_00051970-exon-scaffold_207-1575043694:51633..51732 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1575043694:50994..51178 | TCONS_00051970-exon-scaffold_207-1575043694:50994..51178 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1510915933:57347..57408 | TCONS_00051970-exon-scaffold_207-1510915933:57347..57408 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1510915933:51633..51732 | TCONS_00051970-exon-scaffold_207-1510915933:51633..51732 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1510915933:50994..51178 | TCONS_00051970-exon-scaffold_207-1510915933:50994..51178 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1491911889:57347..57408 | TCONS_00051970-exon-scaffold_207-1491911889:57347..57408 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1491911889:51633..51732 | TCONS_00051970-exon-scaffold_207-1491911889:51633..51732 | Clytia hemisphaerica | exon |
| TCONS_00051970-exon-scaffold_207-1491911889:50994..51178 | TCONS_00051970-exon-scaffold_207-1491911889:50994..51178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_207 | supercontig | scaffold_207:50994..57408 - |
Blast
The following BLAST results are available for this feature:
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