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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051961 ID=TCONS_00051961|Name=TCONS_00051961|organism=Clytia hemisphaerica|type=transcript|length=1125bp
NNGACCGTGAATACTGGTGGAACGTGTCCGTTAAAACACCTGCAAATGTT
CGTCATAACAAGCCTGATTTGATCATGTGGAATAAGGCAACAAAAAGTTG
TCATATTATTGAGTTTAGTTGTCCCAACGATATGAATGTATCGAAAAAGG
TGAAGGAAAAAGAGGACCACTATGGTCCACTGATTCGGGCAATGAATATC
ATGTACCCCGACTACAAGTTTGTCTTTGTTCCGATTATTGTTGGTGCTCT
TGGTACTGTTCCCAAAGAACTGTTAATGTACATTAAATTGCTTGGCTTTT
CGGAAAATGAAAGCAaacaaatgataagatttatgcaacaaaaaagTATC
ATCGGGACTGTAAAAATTaccaaaacatttttaaattttaaagtttAACA
TAATTCATTCACAattcaatataattttttttttcctctaGCCTGTTTTT
CCTATTCTACTCAAGTTCATTTATAAGTCTCGTATGTTTTTATCATGACT
NAAATAAATACATCGAATGTGCCAGAGCTCACGAGGAAGACAAAATTGTA
CGAGTTGCGAGAGAATTGTTACAACAAGCCGGTATTGACGACGATGAGAA
CGTTAGCCCTCGAACGATCAGCCAACGCTaccttcaaaaagttttgaaaa
ccaaatttGAGAAGTTCGAAAGCAAAATACTCCATGGTTACGTTCAAAGA
AAAGTCTCTGCAGATCAAAACGTCGACCATTCTGCATCAAAAGAATGGCT
CACCAACAAATATACTTCGTCTCACTTTGAAGCGTACGCATGTGCTATCC
AGGAAGGTGAAATTGGAACCAAGGATTTGATATATCGCAGAGACAGAAGG
AACAACGtaccagtaaagcatgataatAAATGTAGACTGTGTAAAAGCCA
AGTTGAAGATATTACACACGTAATCAGTAGTTGTCCGAAAATGTCTTCAC
GCTACTACCTACCAATGAGACATGATATCGTTGCTAAGTTTGTATATGAG
AAAATTCGACTNGACATTTTCGGTAACGTTTTTACTATAAATTTTAACTC
atatttcatttgattttaaCACACTTTATTGTTTTAATCCTTGCCCTTCA
GACGCCGGGCCGGAGTTTTTATTGT Run BLAST on NCBI protein sequence of TCONS_00051961-protein >TCONS_00051961-protein ID=TCONS_00051961-protein|Name=TCONS_00051961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
DREYWWNVSVKTPANVRHNKPDLIMWNKATKSCHIIEFSCPNDMNVSKKV
KEKEDHYGPLIRAMNIMYPDYKFVFVPIIVGALGTVPKELLMYIKLLGFS
ENESKQMIRFMQQKSIIGTVKITKTFLNFKV Run BLAST on NCBI transcript from alignment at scaffold_206:308086..309210 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051961 ID=TCONS_00051961|Name=TCONS_00051961|organism=Clytia hemisphaerica|type=transcript|length=1125bp|location=Sequence derived from alignment at scaffold_206:308086..309210 (Clytia hemisphaerica)
ACAATAAAAACTCCGGCCCGGCGTCTGAAGGGCAAGGATTAAAACAATAA
AGTGTGttaaaatcaaatgaaatatGAGTTAAAATTTATAGTAAAAACGT
TACCGAAAATGTCNAGTCGAATTTTCTCATATACAAACTTAGCAACGATA
TCATGTCTCATTGGTAGGTAGTAGCGTGAAGACATTTTCGGACAACTACT
GATTACGTGTGTAATATCTTCAACTTGGCTTTTACACAGTCTACATTTat
tatcatgctttactggtaCGTTGTTCCTTCTGTCTCTGCGATATATCAAA
TCCTTGGTTCCAATTTCACCTTCCTGGATAGCACATGCGTACGCTTCAAA
GTGAGACGAAGTATATTTGTTGGTGAGCCATTCTTTTGATGCAGAATGGT
CGACGTTTTGATCTGCAGAGACTTTTCTTTGAACGTAACCATGGAGTATT
TTGCTTTCGAACTTCTCaaatttggttttcaaaactttttgaaggtAGCG
TTGGCTGATCGTTCGAGGGCTAACGTTCTCATCGTCGTCAATACCGGCTT
GTTGTAACAATTCTCTCGCAACTCGTACAATTTTGTCTTCCTCGTGAGCT
CTGGCACATTCGATGTATTTATTTNAGTCATGATAAAAACATACGAGACT
TATAAATGAACTTGAGTAGAATAGGAAAAACAGGCtagaggaaaaaaaaa
attatattgaatTGTGAATGAATTATGTTaaactttaaaatttaaaaatg
ttttggtAATTTTTACAGTCCCGATGATActtttttgttgcataaatctt
atcatttgttTGCTTTCATTTTCCGAAAAGCCAAGCAATTTAATGTACAT
TAACAGTTCTTTGGGAACAGTACCAAGAGCACCAACAATAATCGGAACAA
AGACAAACTTGTAGTCGGGGTACATGATATTCATTGCCCGAATCAGTGGA
CCATAGTGGTCCTCTTTTTCCTTCACCTTTTTCGATACATTCATATCGTT
GGGACAACTAAACTCAATAATATGACAACTTTTTGTTGCCTTATTCCACA
TGATCAAATCAGGCTTGTTATGACGAACATTTGCAGGTGTTTTAACGGAC
ACGTTCCACCAGTATTCACGGTCNN Coding sequence (CDS) from alignment at scaffold_206:308086..309210 >TCONS_00051961 ID=TCONS_00051961|Name=TCONS_00051961|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_206:308086..309210 (Clytia hemisphaerica)
TTaaactttaaaatttaaaaatgttttggtAATTTTTACAGTCCCGATGA
TActtttttgttgcataaatcttatcatttgttTGCTTTCATTTTCCGAA
AAGCCAAGCAATTTAATGTACATTAACAGTTCTTTGGGAACAGTACCAAG
AGCACCAACAATAATCGGAACAAAGACAAACTTGTAGTCGGGGTACATGA
TATTCATTGCCCGAATCAGTGGACCATAGTGGTCCTCTTTTTCCTTCACC
TTTTTCGATACATTCATATCGTTGGGACAACTAAACTCAATAATATGACA
ACTTTTTGTTGCCTTATTCCACATGATCAAATCAGGCTTGTTATGACGAA
CATTTGCAGGTGTTTTAACGGACACGTTCCACCAGTATTCACGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051961-exon-scaffold_206-1491911889:308086..309210 | TCONS_00051961-exon-scaffold_206-1491911889:308086..309210 | Clytia hemisphaerica | exon |
| TCONS_00051961-exon-scaffold_206-1510915933:308086..309210 | TCONS_00051961-exon-scaffold_206-1510915933:308086..309210 | Clytia hemisphaerica | exon |
| TCONS_00051961-exon-scaffold_206-1575043694:308086..309210 | TCONS_00051961-exon-scaffold_206-1575043694:308086..309210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:308086..309210 . |
Blast
The following BLAST results are available for this feature:
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