|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051957 ID=TCONS_00051957|Name=TCONS_00051957|organism=Clytia hemisphaerica|type=transcript|length=844bp
NGCACGTCTTTGGACACTCTCGATCAGGTTGATAGATCGACGTAATCTTG
GTTGCCATACTGATTGAGCATACTCTAAATGTGGTCGTACAAAGGTGGTA
TAAAGTATCTGGAATATGTGAGGACTAGGGTCTTGAAATCCTCTTTTGAG
CAATCCCAACATAGAATTAGCTTTGTTTACTTGCTTAGCGATATGTTCTT
CAAATGAAAGTTCTGAGTCTATCAAAACACCGAGATCTTTTTCTGTGAAG
ACATGTTCAAGTTGCTCTCCATTTAGTTGATACGGGTGTGCATGCTTTAT
GCTCTCGAACTTACCTATCGTTAAAACGTGGCATTTATCGGGGTTGAATT
TCAACAGCCACTCACGGTACAATCTTTCAAGTGCTTCAATGTAATGTTGT
ACGATTAAGGAGTCAAGAATGGAATTGATTTCCTTTATAATCTTCGTGTC
GTCTGCAAACAAGAAAATGCTTGATAGAATATGTTCTGGTAGGTCATTAA
TATAAATAACAAAGAGCAGAGGACCGAGCACGCTTCCTTGAGGAATGCCA
CTTATCACTGGATCTAAAGATGATTTTGCACCATTAACACTCACTAATTG
TTTGCGGTTCGATAGAAAAGATTTGATCCAGTTCAGAATTGATTCGTTTA
TCCCGTAGCGTTCTAGTTTCATCATAAGTCTTCGATGGTGTACCGTGTCA
AATGCCTTGGCAAAGTTGAAGTATATGCAGTCGACCACTTCACTTTTTGC
AGTTGATTCGCAACACATATCTATAAAGGAGATAAGCTGTGTGACTGTTG
ACCTTTTGTTGATGAAACCGTATTGCTTGTTCGATAGAAGTTCT Run BLAST on NCBI protein sequence of TCONS_00051957-protein >TCONS_00051957-protein ID=TCONS_00051957-protein|Name=TCONS_00051957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
ELLSNKQYGFINKRSTVTQLISFIDMCCESTAKSEVVDCIYFNFAKAFDT
VHHRRLMMKLERYGINESILNWIKSFLSNRKQLVSVNGAKSSLDPVISGI
PQGSVLGPLLFVIYINDLPEHILSSIFLFADDTKIIKEINSILDSLIVQH
YIEALERLYREWLLKFNPDKCHVLTIGKFESIKHAHPYQLNGEQLEHVFT
EKDLGVLIDSELSFEEHIAKQVNKANSMLGLLKRGFQDPSPHIFQILYTT
FVRPHLEYAQSVWQPRLRRSINLIESVQRRX Run BLAST on NCBI transcript from alignment at scaffold_206:282610..283453 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051957 ID=TCONS_00051957|Name=TCONS_00051957|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_206:282610..283453 (Clytia hemisphaerica)
AGAACTTCTATCGAACAAGCAATACGGTTTCATCAACAAAAGGTCAACAG
TCACACAGCTTATCTCCTTTATAGATATGTGTTGCGAATCAACTGCAAAA
AGTGAAGTGGTCGACTGCATATACTTCAACTTTGCCAAGGCATTTGACAC
GGTACACCATCGAAGACTTATGATGAAACTAGAACGCTACGGGATAAACG
AATCAATTCTGAACTGGATCAAATCTTTTCTATCGAACCGCAAACAATTA
GTGAGTGTTAATGGTGCAAAATCATCTTTAGATCCAGTGATAAGTGGCAT
TCCTCAAGGAAGCGTGCTCGGTCCTCTGCTCTTTGTTATTTATATTAATG
ACCTACCAGAACATATTCTATCAAGCATTTTCTTGTTTGCAGACGACACG
AAGATTATAAAGGAAATCAATTCCATTCTTGACTCCTTAATCGTACAACA
TTACATTGAAGCACTTGAAAGATTGTACCGTGAGTGGCTGTTGAAATTCA
ACCCCGATAAATGCCACGTTTTAACGATAGGTAAGTTCGAGAGCATAAAG
CATGCACACCCGTATCAACTAAATGGAGAGCAACTTGAACATGTCTTCAC
AGAAAAAGATCTCGGTGTTTTGATAGACTCAGAACTTTCATTTGAAGAAC
ATATCGCTAAGCAAGTAAACAAAGCTAATTCTATGTTGGGATTGCTCAAA
AGAGGATTTCAAGACCCTAGTCCTCACATATTCCAGATACTTTATACCAC
CTTTGTACGACCACATTTAGAGTATGCTCAATCAGTATGGCAACCAAGAT
TACGTCGATCTATCAACCTGATCGAGAGTGTCCAAAGACGTGCN Coding sequence (CDS) from alignment at scaffold_206:282610..283453 >TCONS_00051957 ID=TCONS_00051957|Name=TCONS_00051957|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_206:282610..283453 (Clytia hemisphaerica)
GAACTTCTATCGAACAAGCAATACGGTTTCATCAACAAAAGGTCAACAGT
CACACAGCTTATCTCCTTTATAGATATGTGTTGCGAATCAACTGCAAAAA
GTGAAGTGGTCGACTGCATATACTTCAACTTTGCCAAGGCATTTGACACG
GTACACCATCGAAGACTTATGATGAAACTAGAACGCTACGGGATAAACGA
ATCAATTCTGAACTGGATCAAATCTTTTCTATCGAACCGCAAACAATTAG
TGAGTGTTAATGGTGCAAAATCATCTTTAGATCCAGTGATAAGTGGCATT
CCTCAAGGAAGCGTGCTCGGTCCTCTGCTCTTTGTTATTTATATTAATGA
CCTACCAGAACATATTCTATCAAGCATTTTCTTGTTTGCAGACGACACGA
AGATTATAAAGGAAATCAATTCCATTCTTGACTCCTTAATCGTACAACAT
TACATTGAAGCACTTGAAAGATTGTACCGTGAGTGGCTGTTGAAATTCAA
CCCCGATAAATGCCACGTTTTAACGATAGGTAAGTTCGAGAGCATAAAGC
ATGCACACCCGTATCAACTAAATGGAGAGCAACTTGAACATGTCTTCACA
GAAAAAGATCTCGGTGTTTTGATAGACTCAGAACTTTCATTTGAAGAACA
TATCGCTAAGCAAGTAAACAAAGCTAATTCTATGTTGGGATTGCTCAAAA
GAGGATTTCAAGACCCTAGTCCTCACATATTCCAGATACTTTATACCACC
TTTGTACGACCACATTTAGAGTATGCTCAATCAGTATGGCAACCAAGATT
ACGTCGATCTATCAACCTGATCGAGAGTGTCCAAAGACGTGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051957-exon-scaffold_206-1491911889:282610..283453 | TCONS_00051957-exon-scaffold_206-1491911889:282610..283453 | Clytia hemisphaerica | exon |
| TCONS_00051957-exon-scaffold_206-1510915933:282610..283453 | TCONS_00051957-exon-scaffold_206-1510915933:282610..283453 | Clytia hemisphaerica | exon |
| TCONS_00051957-exon-scaffold_206-1575043694:282610..283453 | TCONS_00051957-exon-scaffold_206-1575043694:282610..283453 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_206 | supercontig | scaffold_206:282610..283453 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
