TCONS_00051957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051957
Unique NameTCONS_00051957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051957 ID=TCONS_00051957|Name=TCONS_00051957|organism=Clytia hemisphaerica|type=transcript|length=844bp
NGCACGTCTTTGGACACTCTCGATCAGGTTGATAGATCGACGTAATCTTG
GTTGCCATACTGATTGAGCATACTCTAAATGTGGTCGTACAAAGGTGGTA
TAAAGTATCTGGAATATGTGAGGACTAGGGTCTTGAAATCCTCTTTTGAG
CAATCCCAACATAGAATTAGCTTTGTTTACTTGCTTAGCGATATGTTCTT
CAAATGAAAGTTCTGAGTCTATCAAAACACCGAGATCTTTTTCTGTGAAG
ACATGTTCAAGTTGCTCTCCATTTAGTTGATACGGGTGTGCATGCTTTAT
GCTCTCGAACTTACCTATCGTTAAAACGTGGCATTTATCGGGGTTGAATT
TCAACAGCCACTCACGGTACAATCTTTCAAGTGCTTCAATGTAATGTTGT
ACGATTAAGGAGTCAAGAATGGAATTGATTTCCTTTATAATCTTCGTGTC
GTCTGCAAACAAGAAAATGCTTGATAGAATATGTTCTGGTAGGTCATTAA
TATAAATAACAAAGAGCAGAGGACCGAGCACGCTTCCTTGAGGAATGCCA
CTTATCACTGGATCTAAAGATGATTTTGCACCATTAACACTCACTAATTG
TTTGCGGTTCGATAGAAAAGATTTGATCCAGTTCAGAATTGATTCGTTTA
TCCCGTAGCGTTCTAGTTTCATCATAAGTCTTCGATGGTGTACCGTGTCA
AATGCCTTGGCAAAGTTGAAGTATATGCAGTCGACCACTTCACTTTTTGC
AGTTGATTCGCAACACATATCTATAAAGGAGATAAGCTGTGTGACTGTTG
ACCTTTTGTTGATGAAACCGTATTGCTTGTTCGATAGAAGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00051957-protein

>TCONS_00051957-protein ID=TCONS_00051957-protein|Name=TCONS_00051957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
ELLSNKQYGFINKRSTVTQLISFIDMCCESTAKSEVVDCIYFNFAKAFDT
VHHRRLMMKLERYGINESILNWIKSFLSNRKQLVSVNGAKSSLDPVISGI
PQGSVLGPLLFVIYINDLPEHILSSIFLFADDTKIIKEINSILDSLIVQH
YIEALERLYREWLLKFNPDKCHVLTIGKFESIKHAHPYQLNGEQLEHVFT
EKDLGVLIDSELSFEEHIAKQVNKANSMLGLLKRGFQDPSPHIFQILYTT
FVRPHLEYAQSVWQPRLRRSINLIESVQRRX
Run BLAST on NCBI

transcript from alignment at scaffold_206:282610..283453

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051957 ID=TCONS_00051957|Name=TCONS_00051957|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_206:282610..283453 (Clytia hemisphaerica)
AGAACTTCTATCGAACAAGCAATACGGTTTCATCAACAAAAGGTCAACAG TCACACAGCTTATCTCCTTTATAGATATGTGTTGCGAATCAACTGCAAAA AGTGAAGTGGTCGACTGCATATACTTCAACTTTGCCAAGGCATTTGACAC GGTACACCATCGAAGACTTATGATGAAACTAGAACGCTACGGGATAAACG AATCAATTCTGAACTGGATCAAATCTTTTCTATCGAACCGCAAACAATTA GTGAGTGTTAATGGTGCAAAATCATCTTTAGATCCAGTGATAAGTGGCAT TCCTCAAGGAAGCGTGCTCGGTCCTCTGCTCTTTGTTATTTATATTAATG ACCTACCAGAACATATTCTATCAAGCATTTTCTTGTTTGCAGACGACACG AAGATTATAAAGGAAATCAATTCCATTCTTGACTCCTTAATCGTACAACA TTACATTGAAGCACTTGAAAGATTGTACCGTGAGTGGCTGTTGAAATTCA ACCCCGATAAATGCCACGTTTTAACGATAGGTAAGTTCGAGAGCATAAAG CATGCACACCCGTATCAACTAAATGGAGAGCAACTTGAACATGTCTTCAC AGAAAAAGATCTCGGTGTTTTGATAGACTCAGAACTTTCATTTGAAGAAC ATATCGCTAAGCAAGTAAACAAAGCTAATTCTATGTTGGGATTGCTCAAA AGAGGATTTCAAGACCCTAGTCCTCACATATTCCAGATACTTTATACCAC CTTTGTACGACCACATTTAGAGTATGCTCAATCAGTATGGCAACCAAGAT TACGTCGATCTATCAACCTGATCGAGAGTGTCCAAAGACGTGCN

Coding sequence (CDS) from alignment at scaffold_206:282610..283453

>TCONS_00051957 ID=TCONS_00051957|Name=TCONS_00051957|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_206:282610..283453 (Clytia hemisphaerica)
GAACTTCTATCGAACAAGCAATACGGTTTCATCAACAAAAGGTCAACAGT
CACACAGCTTATCTCCTTTATAGATATGTGTTGCGAATCAACTGCAAAAA
GTGAAGTGGTCGACTGCATATACTTCAACTTTGCCAAGGCATTTGACACG
GTACACCATCGAAGACTTATGATGAAACTAGAACGCTACGGGATAAACGA
ATCAATTCTGAACTGGATCAAATCTTTTCTATCGAACCGCAAACAATTAG
TGAGTGTTAATGGTGCAAAATCATCTTTAGATCCAGTGATAAGTGGCATT
CCTCAAGGAAGCGTGCTCGGTCCTCTGCTCTTTGTTATTTATATTAATGA
CCTACCAGAACATATTCTATCAAGCATTTTCTTGTTTGCAGACGACACGA
AGATTATAAAGGAAATCAATTCCATTCTTGACTCCTTAATCGTACAACAT
TACATTGAAGCACTTGAAAGATTGTACCGTGAGTGGCTGTTGAAATTCAA
CCCCGATAAATGCCACGTTTTAACGATAGGTAAGTTCGAGAGCATAAAGC
ATGCACACCCGTATCAACTAAATGGAGAGCAACTTGAACATGTCTTCACA
GAAAAAGATCTCGGTGTTTTGATAGACTCAGAACTTTCATTTGAAGAACA
TATCGCTAAGCAAGTAAACAAAGCTAATTCTATGTTGGGATTGCTCAAAA
GAGGATTTCAAGACCCTAGTCCTCACATATTCCAGATACTTTATACCACC
TTTGTACGACCACATTTAGAGTATGCTCAATCAGTATGGCAACCAAGATT
ACGTCGATCTATCAACCTGATCGAGAGTGTCCAAAGACGTGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032888XLOC_032888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051957-exon-scaffold_206-1491911889:282610..283453TCONS_00051957-exon-scaffold_206-1491911889:282610..283453Clytia hemisphaericaexon
TCONS_00051957-exon-scaffold_206-1510915933:282610..283453TCONS_00051957-exon-scaffold_206-1510915933:282610..283453Clytia hemisphaericaexon
TCONS_00051957-exon-scaffold_206-1575043694:282610..283453TCONS_00051957-exon-scaffold_206-1575043694:282610..283453Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051957-proteinTCONS_00051957-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:282610..283453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.585841 0.129033 1.02606 1.02593 1.26861 0.228562 0.482865 0.69983 1.21106 0.611113 0.464062 0.967705 0.7198 0.954787 0.197181 0.311906 1.09069 0.153646 0.396947 0.932109 0.502357 1.50532 1.55013 3.07471 0.550199 0 0.907568 0.313894 0.374582 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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