TCONS_00051947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051947
Unique NameTCONS_00051947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051947 ID=TCONS_00051947|Name=TCONS_00051947|organism=Clytia hemisphaerica|type=transcript|length=719bp
TTTAGCTGTGTTGTTTCTTCCatcatttcttttctttctgttCACATTTC
TTTAAAATGACTGAAAATTAAATTGCTTAAAACTTGGGGCGCATATTCCA
GCGCCGTCGCAACTTAGTCATCACCTCGTCACAAACTGGCTCACACTGAT
AGCGATTCACATTTGAAAATGCCAATTTCACCTGCGGTAGACCTTTATGT
TGACTGTTTGAATTACGAAGATCAGGTGTAATAACTTGGCGACGTCGGTG
TTGTGAAATCTCACCGAAGGCAATTGTTTTAGGGCGCTTGAGACGGGGTG
GAGGTTTTGGTGGTTCGCGATTCCCTTGTCTCTGGGGTGGGAAATTTGGA
TTAATCCTAGGGCGACCGAGTAGTATCTTTGAAGCTGATAGCGGGCGTTT
GAAATCCAGTGCTATACTATGTCGCCATACTCTTGGCTTCTTTTGTTGGT
TGTAGTCTACTTGTGGGACTTCAGTGTTCATGCGGATAGATTGCTTCATG
CGTCGTGCCGTCAAGGGTGTAGTTGCTGTTGTCAACCGTCGCTGGTTGGA
AATTGGAGTAGTCACGGACAGTTCTGGTATGGATGCTTTGGTATATTTTC
TCATTGCAAACGACATGATTTACAAATGTAAATCACCTATGACTTTATAC
TACATTCCCTCCAACAATCCAAATATATTTCCCACAAGAGAAGTCTGTTT
TTTTATCCGTTAATGATAT
Run BLAST on NCBI

protein sequence of TCONS_00051947-protein

>TCONS_00051947-protein ID=TCONS_00051947-protein|Name=TCONS_00051947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSFAMRKYTKASIPELSVTTPISNQRRLTTATTPLTARRMKQSIRMNTEV
PQVDYNQQKKPRVWRHSIALDFKRPLSASKILLGRPRINPNFPPQRQGNR
EPPKPPPRLKRPKTIAFGEISQHRRRQVITPDLRNSNSQHKGLPQVKLAF
SNVNRYQCEPVCDEVMTKLRRRWNMRPKF
Run BLAST on NCBI

transcript from alignment at scaffold_206:137652..138370

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051947 ID=TCONS_00051947|Name=TCONS_00051947|organism=Clytia hemisphaerica|type=transcript|length=719bp|location=Sequence derived from alignment at scaffold_206:137652..138370 (Clytia hemisphaerica)
ATATCATTAACGGATAAAAAAACAGACTTCTCTTGTGGGAAATATATTTG
GATTGTTGGAGGGAATGTAGTATAAAGTCATAGGTGATTTACATTTGTAA
ATCATGTCGTTTGCAATGAGAAAATATACCAAAGCATCCATACCAGAACT
GTCCGTGACTACTCCAATTTCCAACCAGCGACGGTTGACAACAGCAACTA
CACCCTTGACGGCACGACGCATGAAGCAATCTATCCGCATGAACACTGAA
GTCCCACAAGTAGACTACAACCAACAAAAGAAGCCAAGAGTATGGCGACA
TAGTATAGCACTGGATTTCAAACGCCCGCTATCAGCTTCAAAGATACTAC
TCGGTCGCCCTAGGATTAATCCAAATTTCCCACCCCAGAGACAAGGGAAT
CGCGAACCACCAAAACCTCCACCCCGTCTCAAGCGCCCTAAAACAATTGC
CTTCGGTGAGATTTCACAACACCGACGTCGCCAAGTTATTACACCTGATC
TTCGTAATTCAAACAGTCAACATAAAGGTCTACCGCAGGTGAAATTGGCA
TTTTCAAATGTGAATCGCTATCAGTGTGAGCCAGTTTGTGACGAGGTGAT
GACTAAGTTGCGACGGCGCTGGAATATGCGCCCCAAGTTTTAAGCAATTT
AATTTTCAGTCATTTTAAAGAAATGTGaacagaaagaaaagaaatgatGG
AAGAAACAACACAGCTAAA

Coding sequence (CDS) from alignment at scaffold_206:137652..138370

>TCONS_00051947 ID=TCONS_00051947|Name=TCONS_00051947|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_206:137652..138370 (Clytia hemisphaerica)
ATGTCGTTTGCAATGAGAAAATATACCAAAGCATCCATACCAGAACTGTC
CGTGACTACTCCAATTTCCAACCAGCGACGGTTGACAACAGCAACTACAC
CCTTGACGGCACGACGCATGAAGCAATCTATCCGCATGAACACTGAAGTC
CCACAAGTAGACTACAACCAACAAAAGAAGCCAAGAGTATGGCGACATAG
TATAGCACTGGATTTCAAACGCCCGCTATCAGCTTCAAAGATACTACTCG
GTCGCCCTAGGATTAATCCAAATTTCCCACCCCAGAGACAAGGGAATCGC
GAACCACCAAAACCTCCACCCCGTCTCAAGCGCCCTAAAACAATTGCCTT
CGGTGAGATTTCACAACACCGACGTCGCCAAGTTATTACACCTGATCTTC
GTAATTCAAACAGTCAACATAAAGGTCTACCGCAGGTGAAATTGGCATTT
TCAAATGTGAATCGCTATCAGTGTGAGCCAGTTTGTGACGAGGTGATGAC
TAAGTTGCGACGGCGCTGGAATATGCGCCCCAAGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032878XLOC_032878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051947-proteinTCONS_00051947-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051947-exon-scaffold_206-1491911889:137652..138370TCONS_00051947-exon-scaffold_206-1491911889:137652..138370Clytia hemisphaericaexon
TCONS_00051947-exon-scaffold_206-1510915933:137652..138370TCONS_00051947-exon-scaffold_206-1510915933:137652..138370Clytia hemisphaericaexon
TCONS_00051947-exon-scaffold_206-1575043694:137652..138370TCONS_00051947-exon-scaffold_206-1575043694:137652..138370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:137652..138370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0678361	0	0	0	0.0741309	0.0894358	0	0.820686	0.798719	0	0.0463294	0	0	0	0	0	0	0.0739483	0.0773816	0	0	0	0	0.448128	0.133315	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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