TCONS_00051939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051939
Unique NameTCONS_00051939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051939 ID=TCONS_00051939|Name=TCONS_00051939|organism=Clytia hemisphaerica|type=transcript|length=661bp
GGAATATCTATTATATTAGTAGGAGATGTTGCACAGTTACCACCAGTCAT
GGATGATGTATTGTAccattcttttccaaaaaatgaaattgcagtTGCAG
GCTATCTGGCCTATTGTTGTTTCAGAACTGTCGTAAAACTTGAAGCAAAT
ATGAGATCTGCTGGTGAGGATGAGTCAcaaaagaaatttagaaaagcttt
gaaaaatttgagaaatggaaaatcaaCAATGGAATTTTTTCTTGACCAGA
CAACCTGAAAAAAACCCTGTTGACTATAATAAATGCATCAGGCTATCCTT
TGCAAATGAAGTTGTCAGAGCACATAATGGGAAAATGTTGGATTCTTTAC
AATCACCCATTGCAGTCATTAAAGCAAAAAATACTCCACCAAGTGCATCA
AAATCATCCTCTGAAGAATTTGGTTTAGCAAATGAAGTTTTCCTTGCCAA
AGGTGCCAAAGTAATGCTTACAAGAAACTTGTGGTCAGATGTGGGACTTT
GTAACGGAAGTTTAGGCATTGTCAAAGACATAATATTCCAAAGAAACCAC
TTGCCACATGTGCTTCCTATAGCTGTTATAGTAAAATTTGATAGATATAC
AGGGCCAAGTTTTTTTGATGACGAAGATAATTGTGTTCCAATTGTGCCTA
TTATAGAAACT
Run BLAST on NCBI

protein sequence of TCONS_00051939-protein

>TCONS_00051939-protein ID=TCONS_00051939-protein|Name=TCONS_00051939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MENQQWNFFLTRQPEKNPVDYNKCIRLSFANEVVRAHNGKMLDSLQSPIA
VIKAKNTPPSASKSSSEEFGLANEVFLAKGAKVMLTRNLWSDVGLCNGSL
GIVKDIIFQRNHLPHVLPIAVIVKFDRYTGPSFFDDEDNCVPIVPIIET
Run BLAST on NCBI

transcript from alignment at scaffold_206:35411..36071

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051939 ID=TCONS_00051939|Name=TCONS_00051939|organism=Clytia hemisphaerica|type=transcript|length=661bp|location=Sequence derived from alignment at scaffold_206:35411..36071 (Clytia hemisphaerica)
AGTTTCTATAATAGGCACAATTGGAACACAATTATCTTCGTCATCAAAAA
AACTTGGCCCTGTATATCTATCAAATTTTACTATAACAGCTATAGGAAGC
ACATGTGGCAAGTGGTTTCTTTGGAATATTATGTCTTTGACAATGCCTAA
ACTTCCGTTACAAAGTCCCACATCTGACCACAAGTTTCTTGTAAGCATTA
CTTTGGCACCTTTGGCAAGGAAAACTTCATTTGCTAAACCAAATTCTTCA
GAGGATGATTTTGATGCACTTGGTGGAGTATTTTTTGCTTTAATGACTGC
AATGGGTGATTGTAAAGAATCCAACATTTTCCCATTATGTGCTCTGACAA
CTTCATTTGCAAAGGATAGCCTGATGCATTTATTATAGTCAACAGGGTTT
TTTTCAGGTTGTCTGGTCAAGAAAAAATTCCATTGttgattttccatttc
tcaaatttttcaaagcttttctaaatttcttttgTGACTCATCCTCACCA
GCAGATCTCATATTTGCTTCAAGTTTTACGACAGTTCTGAAACAACAATA
GGCCAGATAGCCTGCAactgcaatttcattttttggaaaagaatggTACA
ATACATCATCCATGACTGGTGGTAACTGTGCAACATCTCCTACTAATATA
ATAGATATTCC

Coding sequence (CDS) from alignment at scaffold_206:35411..36071

>TCONS_00051939 ID=TCONS_00051939|Name=TCONS_00051939|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_206:35411..36071 (Clytia hemisphaerica)
AGTTTCTATAATAGGCACAATTGGAACACAATTATCTTCGTCATCAAAAA
AACTTGGCCCTGTATATCTATCAAATTTTACTATAACAGCTATAGGAAGC
ACATGTGGCAAGTGGTTTCTTTGGAATATTATGTCTTTGACAATGCCTAA
ACTTCCGTTACAAAGTCCCACATCTGACCACAAGTTTCTTGTAAGCATTA
CTTTGGCACCTTTGGCAAGGAAAACTTCATTTGCTAAACCAAATTCTTCA
GAGGATGATTTTGATGCACTTGGTGGAGTATTTTTTGCTTTAATGACTGC
AATGGGTGATTGTAAAGAATCCAACATTTTCCCATTATGTGCTCTGACAA
CTTCATTTGCAAAGGATAGCCTGATGCATTTATTATAGTCAACAGGGTTT
TTTTCAGGTTGTCTGGTCAAGAAAAAATTCCATTGttgattttccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032870XLOC_032870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051939-exon-scaffold_206-1491911889:35411..36071TCONS_00051939-exon-scaffold_206-1491911889:35411..36071Clytia hemisphaericaexon
TCONS_00051939-exon-scaffold_206-1510915933:35411..36071TCONS_00051939-exon-scaffold_206-1510915933:35411..36071Clytia hemisphaericaexon
TCONS_00051939-exon-scaffold_206-1575043694:35411..36071TCONS_00051939-exon-scaffold_206-1575043694:35411..36071Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051939-proteinTCONS_00051939-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:35411..36071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1045	3.89928	2.4695	1.99849	1.42572	0.889925	0	0.463254	1.24466	1.94957	1.72337	4.90014	1.24038	1.25694	0.455122	0.54072	0.374974	0.650633	0.572383	1.34429	0.755123	3.96767	0.403898	1.03284	0.72392	0.833228	0	1.02886	0.933652	1.12913
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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