TCONS_00051936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051936
Unique NameTCONS_00051936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051936 ID=TCONS_00051936|Name=TCONS_00051936|organism=Clytia hemisphaerica|type=transcript|length=354bp
ataacaaaaaggaaatttaCTTGGCCCGTTTATAGCGATATAATTTACAG
TTGCCATCAACGTGGCAACTGTGTTGGTAGATAGCACAAGCAGGACACTC
GTTCCAATACTTTTCTTGAATGACGTCCTTTCTGTTTATCTAAAAACACC
ATTCTTTGAATGACTGCCCAAAGCATATAGGATCAATCGTTGCTTTCTGA
AATATTAATCAATTCAATGCAAGATCATCGAATTATCTATATGTTTACCC
TCCAGTAATACAACAATGATGGACGTaatgaacatggtctaaatctAGAC
GATGGTCAGTATGTGACGTCTaggttttgaaattcaatgctTTCGCACAC
CAGG
Run BLAST on NCBI

transcript from alignment at scaffold_206:11317..11670

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051936 ID=TCONS_00051936|Name=TCONS_00051936|organism=Clytia hemisphaerica|type=transcript|length=354bp|location=Sequence derived from alignment at scaffold_206:11317..11670 (Clytia hemisphaerica)
CCTGGTGTGCGAAagcattgaatttcaaaacctAGACGTCACATACTGAC
CATCGTCTagatttagaccatgttcattACGTCCATCATTGTTGTATTAC
TGGAGGGTAAACATATAGATAATTCGATGATCTTGCATTGAATTGATTAA
TATTTCAGAAAGCAACGATTGATCCTATATGCTTTGGGCAGTCATTCAAA
GAATGGTGTTTTTAGATAAACAGAAAGGACGTCATTCAAGAAAAGTATTG
GAACGAGTGTCCTGCTTGTGCTATCTACCAACACAGTTGCCACGTTGATG
GCAACTGTAAATTATATCGCTATAAACGGGCCAAGtaaatttcctttttg
ttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032867XLOC_032867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051936-exon-scaffold_206-1491911889:11317..11670TCONS_00051936-exon-scaffold_206-1491911889:11317..11670Clytia hemisphaericaexon
TCONS_00051936-exon-scaffold_206-1510915933:11317..11670TCONS_00051936-exon-scaffold_206-1510915933:11317..11670Clytia hemisphaericaexon
TCONS_00051936-exon-scaffold_206-1575043694:11317..11670TCONS_00051936-exon-scaffold_206-1575043694:11317..11670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:11317..11670 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.91478	6.44208	2.77032	2.16826	93.7014	84.9999	119.535	81.2803	44.9477	77.8939	63.7071	50.515	45.8884	48.8385	14.0323	19.9709	24.6126	24.0975	13.785	17.691	15.3767	18.6928	8.41615	7.90655	109.807	49.4688	10.7359	11.0996	7.33236	6.08709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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