TCONS_00051923 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051923
Unique Name	TCONS_00051923
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1380

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_206:204785..209087-

transcript sequence

>TCONS_00051923 ID=TCONS_00051923|Name=TCONS_00051923|organism=Clytia hemisphaerica|type=transcript|length=1380bp
TCAGTAATTTTTTATCTCAATATTATAGGGCTAATAGAGTTTTGAGAACA
TGGAACAAGGACAAACTAATTCAGACTTAATTTCAAATGGATGGTTCATG
GAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCTTTAGAAGTTGAAAA
AGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATATTATGGTGTTTCAAA
GTAAGAATCATGGCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACG
GAATTTGATGAATATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAA
CTCACATCCTAACCCAGAGAAGgtGTTGATAATTGGTGGAGGTGATGGTG
GTATTGCAAGGGAATGCGCTAAACATCCAAAAGTCAAATCAGTCACACAA
TGTGAAATTGATGGTGGATGTTGTTGCCTTGAGTAAGAAATATTTACCTT
CCATGGCAAGTGGTTTTGATTCAcctaaaatgaatttgaatattGGTGAT
GGGTTTGCTTTCAtggaaaaacatcaaaatgaatTTGACGTAGTCATTTC
AGATACAAGTGACCCTGTTGGACCTGCTGAGAGACTTTTCTCAGAGAATT
ATTACAAGTTAGTATATGCTGCCTTAAAAGAAGATGGTATCCTCTCAGTT
CAAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGAAATTTGTTGGA
CTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTACAAGTTATGTCC
CTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAAGTAAGAATGCt
CACACAAACTTTAAGAAGCCTGCTATAGTGttcaatgaagatgaaaaaga
gaAGATTGGTTTCAGATATTACGACGAAGAGATCCACGAGAATGCTTTCG
TTCTACCAAGAGCTTTTAAAAAGaTTTTAGCTGGAACAAATCACGAAGAG
TAATATTTGAAGGAGCGGACTAATGAGGACTGGTCAGTTGGTAAGAATGC
AATTAGTAAAACTTCAAGATAGTTATCAGATAAAAAAGAGAATCGTAGTA
TCTGGAACCATACAATCCATAAGGAGGAGCTGATCAGGGATCACAGCGAT
CTTTGTTAAAACAATGAATTTTTGGACTTAAAAACCATGTTTTCCAGGCt
ttgaagagattttttttataaaacttatTGATTCCTGtagtattttgaaa
tttattcaaCCGCCTATTTTAAGTAGTACATTTCAGTTAGGCAACTTTTA
CAAATAAATCTATTTATTTTGGATAATCAAATTTGATATTATAGTTTagt
attttgaaattgaaataaatttcaGTGCTTTTACTgaagattttactttt
aaattgCCTTGTTTTTGAGCTGGATAGTCA

Run BLAST on NCBI

transcript from alignment at scaffold_206:204785..209087-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051923 ID=TCONS_00051923|Name=TCONS_00051923|organism=Clytia hemisphaerica|type=transcript|length=4303bp|location=Sequence derived from alignment at scaffold_206:204785..209087- (Clytia hemisphaerica)
TCAGTAATTTTTTATCTCAATATTATAGGGCTAATAGAGTTTTGAGAACA
TGGAACAAGGACAAACTAATTCAGACTTAATTTCAAATGGATGGTTCATG
GAAAAAAATAAGCAATGGTCTGGACAAGCGTTTTCTTTAGAAGTTGAAAA
AGTTCTTGAGGTGAAACAGTCAGAATTTCAAGATATTATGGTGTTTCAAA
GGTAACCGAAGTAATTAAAATTTCCACATTTCTTTTTCAATCAATTTCAA
TGAATCCCGACCTAATTTTATCTGTTTTTTCTCATTTTTTTAGCAAATAA
TGATTACGCTAAATAGAAATTTCCCAATACTGCTAAGTACTGATGTGTTT
TTAATGGGTTGTATATATCATTGTATATATCTAGTCCTGGGGCTTTTTGG
CTTGAAAAGGTTAAAAATGAAACAGCTGAATAATCACGACCTGAAATTTA
ATGTAAAAGTATTCAATTATTGAAAGTATAATTCCTATATTTCGTTTTGT
ACTTTCAACTGCTTTCCATGTACTAAAAACTTTTTATTCCGATTAGTAAG
AATCATGGCAACGTTCTTGTCTTGGATGGTGTTATTCAATGTACGGAATT
TGATGAATATTGTTATCAAGAAATGTTGGCTTATCTTGCTCTAAACTCAC
ATCCTAACCCAGAGAAGGTAAATGATTGGAAGTAGATTCTTTGTTTCATT
AATCATTTATTTGTACTGATAGATTTCTGACTAGATCTTTTTGATTTGGC
AAGTGCATCAATTAAAGAAATCTGGAAAATGTATATTTTACTGTATATAT
CGTTTTTCATTTAAAAAATTGTGGTTCTCAAATTGAAAGCACTTTGTCCA
AACAGTTTTTTTTATGTAGGATGCAGAAAACTTTGTTATAAATATTTTTC
AGGTGTTGATAATTGGTGGAGGTGATGGTGGTATTGCAAGGGAATGCGCT
AAACATCCAAAAGTCAAATCAGTCACACAATGTGAAATTGATGGTGTAAG
GAGAATGATATACAAATAGAGTCTCCATAACTCGATTACACATACAACAC
CAGGAATTGAAATTTGTTTGAGTTATGTAAAATGCAAGTTATAGAGACTT
GTTTATATGGGGTTCTTACTGAAGTGACTGATAGAAACCTTAATGTAGTA
TTGCATTGTTTATATTATCTTTTCAATGTAATCAAAACAAATGACTTAGT
ATCGGGCTGAATGCAGTTTACTTTCATCGGTTCTATCTCAACCCTGGTTA
TCTTCAACTTTTCTTCTCCTCTCAAAAGGATTCGAAAGCAAAGCTCAAAC
TTTCTCTTAACCCTTTTTTCATCTCACACACAACATCTTACCAAGAACCT
AATTTCTGTTTTATTTGATAGGATGTTGTTGCCTTGAGTAAGAAATATTT
ACCTTCCATGGCAAGTGGTTTTGATTCACCTAAAATGAATTTGAATATTG
GTGATGGGTTTGCTTTCATGGAAAAACATCAAAATGAATTTGACGTAGTC
ATTTCAGATACAAGTGACCCTGTTGGTATGTTTGCTTCACCTTGAAGGAA
TAAATTTGCATGGTTTACTGTTATATTTTTAAAATTTTCAATATAGAATC
ACTGTCAGTATAAGAAACAAAGAGTTTTTTGCAATGTCTCTAGGGGGAAT
CCAAGAAGATTTTTCAGGGGGTCTAAAGGAGTAGCTTTCATTATAGGGTG
TGAAAAGTTATTCTAAAATTTTTAGGGGAATGACACACTGATCTAAATTC
GTCCACCCTCACTTTAATAAGGTATGAAGGAATTTATCCAAGGGTTCTTT
TGCTAATTTTACTATTTTCCAGTGGGAAAATATACATTTCTAAGAATCTT
TTTTGCTTTAAAAGATTCGCCCTTTTTTCGGTTTCGTTCGTTCGTTTTAA
AAGTAAGCAAAGGATTCATAGGTTGTTCTCCTCTATTTTTTTGTAGGACC
TGCTGAGAGACTTTTCTCAGAGAATTATTACAAGTTAGTATATGCTGCCT
TAAAAGAAGATGGTATCCTCTCAGTTCAAGGTATTTATAATGTTGGAAAT
ACTGTCTTTAAAAACGAGTTTTTTTTCTGATATGAATCAAGAGCTGAGCA
AAATTATAACATGTTTCAAACATCTTATAATACAACAGTGACATTTCAAT
AAAACTTTCTTCTTTATTGAGACGGGGATCTTACACCTAGCAGATATTAT
TTATCCCTATCCTTGTGGATAGGGGTAATAAACTTTTTCGCCTGAGAATC
TTCATTCAATTACTTTAAAAAATCTTCATATTCAGACTTCTAAATTTAAT
GATATTATCATTATAGGGTATCTTTTAATAACCTAAGAAATTTCCAATAT
TTCAGGCGAATGTATGTTTTTACATGCAAATTTAATCAGAAATTTGTTGG
ACTTTTGTAATGGTTTATTTGCAAAAGCAGCCTATGCTACAAGTTATGTC
CCTACCTACCCGTGTGGTCAGATTGGGTATGTTCTTGCAAGTAAGAATGC
TGTAAGTTTTATTTATTTTAATCTTTAACCGTTTTTAATGGCCAAAAAAT
CCTTATTGCCAATATAGTACTACTAACATGGAAGTGGCTTTTGGTAACTT
TTACATTATGAGAACCGAGACTGATCAAGCTTAAGTTATTTCCCTATCCT
TAGTCCGGTAACGGTCTTTAAATGTTGATTGAACTACGATACCGTCAACT
GCTCTAACTTGGGACGATTGGTCGAGTGACGTCAAACACTCCATCGTTTT
GCCACTGATAATGGTCTTCTTCGTTCCAGACATTCGCGTGTGTTCCACTA
CGGATTTTCTTCATATTTCGATTTTTAAAAGCCTACTCGGTGCAAAAGAG
AAATCGTGTATTTTCTAATACGCCGTTCATTAACTCAAATCAAATGACTT
TGGAGGTTCGGTGAAATAGTTGCCGAATTGTCGTCCCAGGTTTTGTCAGA
TAGTCCCAAGTTAGAGCAGTTGGCGGTATGTCGGGAGAAAAAGAATCATC
ATTGTTTCGAATATGAAAATACTTGACGCAAATTTACCTTGCCCTAATAA
TAAAATGTAAACTCTACATACTTTCAGCACACAAACTTTAAGAAGCCTGC
TATAGTGTTCAATGAAGATGAAAAAGAGAAGATTGGTTTCAGATATTACG
ACGAAGAGATCCACGAGAATGCTTTCGTTCTACCAAGAGCTTTTAAAAAG
GTACGCAATCCATTTATTTATTGTTGTTAGACCAGAATTGGAAACATTCG
GCATAAATACTTCAAATCTAAATATCTATAAAATTAAGATTTTTATCAGT
TTAGAGAAAGTAGACCCCCAATTAAAAAAGGAAACTTGTCTAGAGTACAA
GTTTAAAGCTGTTTGGAGTTGAGACACTATTTTATTGGTGAACTTTCAAA
TGATATTTTAATATTTTTTATATTAATATTTTAAAAAGTTATCTTCCATT
TAAAAAAACTAAGTAAAATACATTACTCTGAGTTTCGTGTTTTCACACTA
ATCATATGTACAGTAATGATTGAAAAATCTGAAATTCGACGTAAAAAGTT
AAAAAAACTGGATAATTGGTGCAATAAAACTAGGTAATAAAAACAATGAT
GAAAGCATTAAAAAGTATTGAAAATAAAATTTATGATTTGTCCGGATTTC
AGATTTTTCAATCATTACTGTACATATGATTAGTGTGAAAACACGAAACT
CAGAGTAATGTACTTTACTTAGTTTTTTTTTTAAATGGAAGATAACTTTT
AAAAACATTGATACATGGCTCTGGTTTTTTGAACTGATCGAGCACTCTCT
GACATTGATTTGCCACATTTGTTTTAATATTTTTTATATTATTTAGATTT
TAGCTGGAACAAATCACGAAGAGTAATATTTGAAGGAGCGGACTAATGAG
GACTGGTCAGTTGGTAAGAATGCAATTAGTAAAACTTCAAGATAGTTATC
AGATAAAAAAGAGAATCGTAGTATCTGGAACCATACAATCCATAAGGAGG
AGCTGATCAGGGATCACAGCGATCTTTGTTAAAACAATGAATTTTTGGAC
TTAAAAACCATGTTTTCCAGGCTTTGAAGAGATTTTTTTTATAAAACTTA
TTGATTCCTGTAGTATTTTGAAATTTATTCAACCGCCTATTTTAAGTAGT
ACATTTCAGTTAGGCAACTTTTACAAATAAATCTATTTATTTTGGATAAT
CAAATTTGATATTATAGTTTAGTATTTTGAAATTGAAATAAATTTCAGTG
CTTTTACTGAAGATTTTACTTTTAAATTGCCTTGTTTTTGAGCTGGATAG
TCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032859	XLOC_032859	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_206	supercontig	scaffold_206:204785..209087 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.2073	35.2793	9.56832	6.86584	12.1702	9.403	19.9787	16.821	24.0263	24.2771	18.2411	12.6818	9.96204	6.01191	20.7676	30.4968	42.9735	34.2688	0.541333	4.65512	18.4093	18.3283	33.4544	28.7889	14.611	11.139	27.8215	15.2195	33.9962	23.795

Blast

[Close]

BLAST of TCONS_00051923 vs. Swiss-Prot (Human)
Match: SPEE (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.227e-92
Identity = 86/171 (50.29%), Postives = 123/171 (71.93%), Query Frame = 3

Query:  417 DVVALSKKYLPSMASGFDSPKMNLNIGDGFAFMEKHQNEFDVVISDTSDPVGPAERLFSENYYKLVYAALKEDGILSVQGECMFLHANLIRNLLDFCNGLFAKAAYATSYVPTYPCGQIGYVLASKNAHTNFKKPAIVFNEDEKEKIGFRYYDEEIHENAFVLPRAFKKIL 929
            DV+ +SKK+LP MA G+ S K+ L++GDGF FM+++Q+ FDV+I+D+SDP+GPAE LF E+YY+L+  ALKEDG+L  QGEC +LH +LI+ +  FC  LF   AYA   +PTYP GQIG++L SKN  TNF++P     + +  ++  +YY+ ++H  AFVLP   +K L
Sbjct:  128 DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 298

HSP 2 Score: 160.229 bits (404), Expect = 1.227e-92
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 2

Query:   80 ISNGWFMEKNKQWSGQAFSLEVEKVLEVKQSEFQDIMVFQSKNHGNVLVLDGVIQCTEFDEYCYQEMLAYLALNSHPNPEKVLIIGGGDGGIARECAKHPKVKSVTQCEID 412
            I  GWF E    W GQA SL+VE++L  ++S +QDI+VF+SK +GNVLVLDGVIQCTE DE+ YQEM+A L L SHPNP KVLIIGGGDGG+ RE  KHP V+SV QCEID
Sbjct:   16 IREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEID 126

The following BLAST results are available for this feature:

BLAST of TCONS_00051923 vs. Swiss-Prot (Human)

BLAST of TCONS_00051923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPEE	1.227e-92	50.29	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV...	[more]

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TCONS_00051923 (transcript) - C. hemisphaerica