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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051903 ID=TCONS_00051903|Name=TCONS_00051903|organism=Clytia hemisphaerica|type=transcript|length=2693bpRun BLAST on NCBI protein sequence of TCONS_00051903-protein >TCONS_00051903-protein ID=TCONS_00051903-protein|Name=TCONS_00051903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=781bp MRLIFAVLVVIQLFQNVVSFDIWKTIEESNKDFYKKQKGLSDDNGHRLVGRun BLAST on NCBI transcript from alignment at scaffold_206:82008..123111- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051903 ID=TCONS_00051903|Name=TCONS_00051903|organism=Clytia hemisphaerica|type=transcript|length=41104bp|location=Sequence derived from alignment at scaffold_206:82008..123111- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_206:82008..123111- >TCONS_00051903 ID=TCONS_00051903|Name=TCONS_00051903|organism=Clytia hemisphaerica|type=CDS|length=37488bp|location=Sequence derived from alignment at scaffold_206:82008..123111- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051903 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.055e-26 Identity = 82/278 (29.50%), Postives = 127/278 (45.68%), Query Frame = 2
Query: 368 VLVVIQLFQNVVSFDIWKTIEESNKDF-YKKQKGLSDDN---GHRLVGGDIFMTTQDFLKNRKVLSAPPQNAPKQKIPPVFDFHRKYWKRRIPYQIGYEFNTKERQVIQDSMKYIEARSCLKFSNSKTSSDKHWIRFYKGAGCHSGIGRSYYYDSKSTDVSLGNGCVVISIIVHELLHSLGFFHEQSRTDRDSYLQIYLSKVDKGWHSNFDKNEVGMEAYHGTPYDLRSIMQYGKSTFRKASASGNVMESKGDPDAPIGNS-DMSDWDITELNRRYQC 1186
+L LF ++ + I EE+ D + +QK +S+ N G L GDI + K+R L P W IPY + + I + + +SC+ F + S +I F + GC S +G + ++S+G GC +II HE+LH+LGF+HEQSRTDRD Y+ I+ ++ G+ NFD + + TPYD S+M Y +F K ++ + + ++ IG D S D+ LNR Y C
Sbjct: 9 ILFFTLLFAHIAAVPIKYLPEENVHDADFGEQKDISEINLAAGLDLFQGDILLQ-----KSRNGLRDP----------------NTRWTFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESS--YIIFQQFDGCWSEVGDQHV----GQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNC 259 The following BLAST results are available for this feature:
BLAST of TCONS_00051903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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