TCONS_00051899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051899
Unique NameTCONS_00051899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051899 ID=TCONS_00051899|Name=TCONS_00051899|organism=Clytia hemisphaerica|type=transcript|length=499bp
TAACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATC
AAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGA
ATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCC
AACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaa
aatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAA
AGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAA
CCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACT
TTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCA
AGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGGAGGATTTA
AACTTCAACGTGGAAAATTGATGAATGTCATTCTAAGAGTCGATCGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_206:156212..158000+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051899 ID=TCONS_00051899|Name=TCONS_00051899|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at scaffold_206:156212..158000+ (Clytia hemisphaerica)
TAACATTCTTCCGAGCCTATTTCACCGAATTTGAAGTTTCTTTTGATATC
AAACCTTTTGGAAAAGTTAAACCTTGGACCAATATTCTTCAAGTGACCGA
ATGGAGCAACATCCAAAAGTACGGCAGCCGAGTCCCAGCTGTATGCTTCC
AACCCAATTCAAACAAATTGACCGTTTGTTCTGCTATCAatggaaagaaa
aatcattGTTGGAACTCCAAAATCGATCTACCAACAAACAAGTTCTCGAA
AGTCATCATCAAGCAGAAATTAGTTGGTGGAAAATACTATTACACCATAA
CCATCGATTCCAAAAAGGTTTACAATATCGTGAACACAAAACCAATCACT
TTATACAGAGCGAGAGTCTTCTTATCTGATCCTTGGTATCCGGCAGCCCA
AGCGTTTGTCAAACAAGTGAAAGTCTCCACTACTTCTACTGGTAAGTACC
GgcaaacaatagagagtttatgtatttgctctTATGAAGACGGTAGGGTG
ACTGAAGCGACttggaataacccgcacttctgacccgcaaagtcgaggac
ggtaaaagtgctgatttaccgccgtcctcagctggtcagaatttaatcaa
attagaaccttaccgtctccattacagaaaaaaaaacacttaaaCTCGGT
AATAGCGAGTTtctgtatttgcacttttgaggacggcagagtaactgaag
cgatttggaaaaacccgcacttctgacccgcaaaatcgaggacggtaaaa
gtgctgatttaccatcgtcctcagctggtcaggatctagtcaaattacaa
ccttaccgtctccgtcgctgaaaaacacacatacgtAAACTCGGTATTAT
TCCTTACATCACGGAACCACCAGCTGATTGACTTTAAGTAACTTAAAATC
ATTaaataaccaatcagctgtttggttaatgatgtaatgttagagACATT
GCAATAACTTATATCACCAATACACATCAACGCCTTAGCTGAAAGTTAAA
TAACAGTGGATTGGTTTTTGTGAGTCAAATCCTTAAATCTTTTTAATGGC
ACGCTTACAGATACAGTTGAGTCTCTTAACCTtgaacctctacaactcga
atgtcttgaacaatttttctcCTCTCTTCAGTAAACAATGTTTACCCCAA
ATTCTTACTCCATAGCTCGAAATTTCCTTTACTTGAACAAATGTGCTCTC
CCCATGACGGTTTGAGGTATAGAGACTCATCTGTATTGATACTTGACTAT
TTTGAACCCAAAAAAGTCGAACTGACATCTGTTATAGAGTTTTTTATTAG
TTGTATAATTCTTTTGGATTCAATAGTTCTATTCTGaagaccccttccca
ctggaatttttggccaaaatatcgacCCCAGTGGAAAAgcgtgctatttt
ttccatccacactgaattttctggcttgaaaataattgaattcaaatccc
cagccataagaaatcataggaatatcaatccccatcaagttttggtttgt
tatttttacccccactggctgaaaaaaatcccaccgggtctgtgagaaag
gggtgtttgtAAGTTCAAAATTGTGAAACCAGAATGCTAAGCTCAAATTT
CTCGTTAAGCAAGAGAGCAGAAGCCTACCCTAACCAACTAGGAAACCAGT
CCAACCATTAAGATTGCAATATTTCATATACATCTCTTGTCTCCCAGCAC
TCAATatttatcttcaaattttacttttcagGAGGATTTAAACTTCAACG
TGGAAAATTGATGAATGTCATTCTAAGAGTCGATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032850XLOC_032850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051899-exon-scaffold_206-1491911889:156212..156652TCONS_00051899-exon-scaffold_206-1491911889:156212..156652Clytia hemisphaericaexon
TCONS_00051899-exon-scaffold_206-1510915933:156212..156652TCONS_00051899-exon-scaffold_206-1510915933:156212..156652Clytia hemisphaericaexon
TCONS_00051899-exon-scaffold_206-1575043694:156212..156652TCONS_00051899-exon-scaffold_206-1575043694:156212..156652Clytia hemisphaericaexon
TCONS_00051899-exon-scaffold_206-1491911889:157943..158000TCONS_00051899-exon-scaffold_206-1491911889:157943..158000Clytia hemisphaericaexon
TCONS_00051899-exon-scaffold_206-1510915933:157943..158000TCONS_00051899-exon-scaffold_206-1510915933:157943..158000Clytia hemisphaericaexon
TCONS_00051899-exon-scaffold_206-1575043694:157943..158000TCONS_00051899-exon-scaffold_206-1575043694:157943..158000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:156212..158000 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0869237	0.238596	0	0	0	0	0.157284	0.236836	5.18339	1.99922	0.896962	0.896288	0.191298	0.212449	0.927656	0.0667015	0.248929	0.161013	0	0.6088	0.0280143	0	0	0	0.262696	0.0277638	0	0.358051	0.287007	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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