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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051885 ID=TCONS_00051885|Name=TCONS_00051885|organism=Clytia hemisphaerica|type=transcript|length=1402bp
TGCAAACATCTTTTGGGTGTGAGAAAGACAATTTGTATCGAACGCCCAAA
ACTTGTCTATGTTTTTCACTCTCTTCTCGTTTTTTCTCAACATATCACGT
TTCCAAAGAGCCTCACATGTTGTACACATTCGATTCTTActcccaatttt
gtatttttgtcgcCATTCGTGAAATTTGTTATACTCTTGATCATTTTGCG
CCAACTTCTTCAAAAAATCTGCCaacattttcaaattctcgAAATCCAAG
ATATTGATATAACTTCCGGGTGGTGCAACCTCTGGATCTGACATTGTTGC
TCTGTTCATAACGATAGGAACATTTCCACGACTTAAACCGTTCAAGTAAA
ATTTCTCGGTCACATAATCTTTGCAGTACGCATTTTCCAACGAAAGTGTG
AACTTGTACCGTGATTGAAGTTGAATACATTCTTTCGAATTGAGGGGACA
ATCTCCTTTTAATTCAGGGTTaacattatttttacatcttcCATACAAGT
CAATATCGATGAATTGTTTCAGTGCTCGGATTAATTTGATACGATAAGAA
TCACAATGGTTGCTGATCAACGCTATGATCATTTTATCTTTTCCCTTAGC
ATAGTTTTTCTTCGGGTCTGGTCTTTTATCGGAAGGTAGCAATGGTTTAA
TCACTCGGTATGGTGCAAAGATTTCAGAATCACGACGATAGGTGCCAGTC
CAGTTGAAAATCTCTTTGTAAGCTTCAAAAGAGATTTGATGATCAAAATA
AAGAGGACTTTGGGAAGTCATCCAAATCCAAGTCTGTGTTGGTTTCGATT
TCAACCTTCGAATCACTTTCAAGTGCGCGGCGGACGGTAGATCGTCCGCG
TGGAACAGCACAGCGTCCGCTTTGGAAATATACTTTTTCTGGTCGTAAAC
AACTTGGCAATGGTTGAACGGACACAAAGAACCATCCAGTTCGGTAAGTG
GTGCAAACCGTGGCACGTCATACCAATAAGGGTCTTCAAAAACTTCGGTg
tatgataaaatgattttCTTACGTTTCGACTTGATCAGTTGTCGAACTTt
gtcccaatccttttttccGATCTTAGATGTGATGCTTTTTGAAACACTta
aattactttttttcgttgTTCGAAACCATGATGGAATTTCACTGGTACTC
GGTCTTTTAGAATTCTTCTTCCGACTCGACTTCATTTTTTGCCTctgttg
atttttaattttgcttttcTTGAGCTTAGTTCCTTTGaccaatttatttt
tttcctttgttGAAACAGCTTCGCTTTTCACTCGATTCTCTGCGGTAAAC
CGAGAGGAGCCTTGATATTTGTAAGTAAAAACTAAAACAGCAATAAGAAC
GATAACTAACAAAAACTTCCATAAACTGTTATGCGCAGCCATCTTTCCTG
AC Run BLAST on NCBI protein sequence of TCONS_00051885-protein >TCONS_00051885-protein ID=TCONS_00051885-protein|Name=TCONS_00051885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
SGKMAAHNSLWKFLLVIVLIAVLVFTYKYQGSSRFTAENRVKSEAVSTKE
KNKLVKGTKLKKSKIKNQQRQKMKSSRKKNSKRPSTSEIPSWFRTTKKSN
LSVSKSITSKIGKKDWDKVRQLIKSKRKKIILSYTEVFEDPYWYDVPRFA
PLTELDGSLCPFNHCQVVYDQKKYISKADAVLFHADDLPSAAHLKVIRRL
KSKPTQTWIWMTSQSPLYFDHQISFEAYKEIFNWTGTYRRDSEIFAPYRV
IKPLLPSDKRPDPKKNYAKGKDKMIIALISNHCDSYRIKLIRALKQFIDI
DLYGRCKNNVNPELKGDCPLNSKECIQLQSRYKFTLSLENAYCKDYVTEK
FYLNGLSRGNVPIVMNRATMSDPEVAPPGSYINILDFENLKMLADFLKKL
AQNDQEYNKFHEWRQKYKIGSKNRMCTTCEALWKRDMLRKNEKRVKNIDK
FWAFDTNCLSHTQKMFA Run BLAST on NCBI transcript from alignment at scaffold_205:299293..300694 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051885 ID=TCONS_00051885|Name=TCONS_00051885|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at scaffold_205:299293..300694 (Clytia hemisphaerica)
GTCAGGAAAGATGGCTGCGCATAACAGTTTATGGAAGTTTTTGTTAGTTA
TCGTTCTTATTGCTGTTTTAGTTTTTACTTACAAATATCAAGGCTCCTCT
CGGTTTACCGCAGAGAATCGAGTGAAAAGCGAAGCTGTTTCaacaaagga
aaaaaataaattggtCAAAGGAACTAAGCTCAAgaaaagcaaaattaaaa
atcaacagAGGCAAAAAATGAAGTCGAGTCGGAAGAAGAATTCTAAAAGA
CCGAGTACCAGTGAAATTCCATCATGGTTTCGAAcaacgaaaaaaagtaa
tttaAGTGTTTCAAAAAGCATCACATCTAAGATCggaaaaaaggattggg
acaAAGTTCGACAACTGATCAAGTCGAAACGTAAGaaaatcattttatca
tacACCGAAGTTTTTGAAGACCCTTATTGGTATGACGTGCCACGGTTTGC
ACCACTTACCGAACTGGATGGTTCTTTGTGTCCGTTCAACCATTGCCAAG
TTGTTTACGACCAGAAAAAGTATATTTCCAAAGCGGACGCTGTGCTGTTC
CACGCGGACGATCTACCGTCCGCCGCGCACTTGAAAGTGATTCGAAGGTT
GAAATCGAAACCAACACAGACTTGGATTTGGATGACTTCCCAAAGTCCTC
TTTATTTTGATCATCAAATCTCTTTTGAAGCTTACAAAGAGATTTTCAAC
TGGACTGGCACCTATCGTCGTGATTCTGAAATCTTTGCACCATACCGAGT
GATTAAACCATTGCTACCTTCCGATAAAAGACCAGACCCGAAGAAAAACT
ATGCTAAGGGAAAAGATAAAATGATCATAGCGTTGATCAGCAACCATTGT
GATTCTTATCGTATCAAATTAATCCGAGCACTGAAACAATTCATCGATAT
TGACTTGTATGgaagatgtaaaaataatgttAACCCTGAATTAAAAGGAG
ATTGTCCCCTCAATTCGAAAGAATGTATTCAACTTCAATCACGGTACAAG
TTCACACTTTCGTTGGAAAATGCGTACTGCAAAGATTATGTGACCGAGAA
ATTTTACTTGAACGGTTTAAGTCGTGGAAATGTTCCTATCGTTATGAACA
GAGCAACAATGTCAGATCCAGAGGTTGCACCACCCGGAAGTTATATCAAT
ATCTTGGATTTcgagaatttgaaaatgttGGCAGATTTTTTGAAGAAGTT
GGCGCAAAATGATCAAGAGTATAACAAATTTCACGAATGgcgacaaaaat
acaaaattgggagTAAGAATCGAATGTGTACAACATGTGAGGCTCTTTGG
AAACGTGATATGTTGAGAAAAAACGAGAAGAGAGTGAAAAACATAGACAA
GTTTTGGGCGTTCGATACAAATTGTCTTTCTCACACCCAAAAGATGTTTG
CA Coding sequence (CDS) from alignment at scaffold_205:299293..300694 >TCONS_00051885 ID=TCONS_00051885|Name=TCONS_00051885|organism=Clytia hemisphaerica|type=CDS|length=1401bp|location=Sequence derived from alignment at scaffold_205:299293..300694 (Clytia hemisphaerica)
TCAGGAAAGATGGCTGCGCATAACAGTTTATGGAAGTTTTTGTTAGTTAT
CGTTCTTATTGCTGTTTTAGTTTTTACTTACAAATATCAAGGCTCCTCTC
GGTTTACCGCAGAGAATCGAGTGAAAAGCGAAGCTGTTTCaacaaaggaa
aaaaataaattggtCAAAGGAACTAAGCTCAAgaaaagcaaaattaaaaa
tcaacagAGGCAAAAAATGAAGTCGAGTCGGAAGAAGAATTCTAAAAGAC
CGAGTACCAGTGAAATTCCATCATGGTTTCGAAcaacgaaaaaaagtaat
ttaAGTGTTTCAAAAAGCATCACATCTAAGATCggaaaaaaggattggga
caAAGTTCGACAACTGATCAAGTCGAAACGTAAGaaaatcattttatcat
acACCGAAGTTTTTGAAGACCCTTATTGGTATGACGTGCCACGGTTTGCA
CCACTTACCGAACTGGATGGTTCTTTGTGTCCGTTCAACCATTGCCAAGT
TGTTTACGACCAGAAAAAGTATATTTCCAAAGCGGACGCTGTGCTGTTCC
ACGCGGACGATCTACCGTCCGCCGCGCACTTGAAAGTGATTCGAAGGTTG
AAATCGAAACCAACACAGACTTGGATTTGGATGACTTCCCAAAGTCCTCT
TTATTTTGATCATCAAATCTCTTTTGAAGCTTACAAAGAGATTTTCAACT
GGACTGGCACCTATCGTCGTGATTCTGAAATCTTTGCACCATACCGAGTG
ATTAAACCATTGCTACCTTCCGATAAAAGACCAGACCCGAAGAAAAACTA
TGCTAAGGGAAAAGATAAAATGATCATAGCGTTGATCAGCAACCATTGTG
ATTCTTATCGTATCAAATTAATCCGAGCACTGAAACAATTCATCGATATT
GACTTGTATGgaagatgtaaaaataatgttAACCCTGAATTAAAAGGAGA
TTGTCCCCTCAATTCGAAAGAATGTATTCAACTTCAATCACGGTACAAGT
TCACACTTTCGTTGGAAAATGCGTACTGCAAAGATTATGTGACCGAGAAA
TTTTACTTGAACGGTTTAAGTCGTGGAAATGTTCCTATCGTTATGAACAG
AGCAACAATGTCAGATCCAGAGGTTGCACCACCCGGAAGTTATATCAATA
TCTTGGATTTcgagaatttgaaaatgttGGCAGATTTTTTGAAGAAGTTG
GCGCAAAATGATCAAGAGTATAACAAATTTCACGAATGgcgacaaaaata
caaaattgggagTAAGAATCGAATGTGTACAACATGTGAGGCTCTTTGGA
AACGTGATATGTTGAGAAAAAACGAGAAGAGAGTGAAAAACATAGACAAG
TTTTGGGCGTTCGATACAAATTGTCTTTCTCACACCCAAAAGATGTTTGC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051885-exon-scaffold_205-1491911889:299293..300694 | TCONS_00051885-exon-scaffold_205-1491911889:299293..300694 | Clytia hemisphaerica | exon |
| TCONS_00051885-exon-scaffold_205-1510915933:299293..300694 | TCONS_00051885-exon-scaffold_205-1510915933:299293..300694 | Clytia hemisphaerica | exon |
| TCONS_00051885-exon-scaffold_205-1575043694:299293..300694 | TCONS_00051885-exon-scaffold_205-1575043694:299293..300694 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:299293..300694 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00051885 vs. Swiss-Prot (Human)
Match: FUT7 (Alpha-(1,3)-fucosyltransferase 7 OS=Homo sapiens GN=FUT7 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.074e-34 Identity = 78/266 (29.32%), Postives = 134/266 (50.38%), Query Frame = -2
Query: 112 KKYISKADAVLFHADDLPSA-AHLKVIRRLKSKPTQTWIWMTSQSPLYFDHQISFEAYKEIFNWTGTYRRDSEIFAPYRVIKPLL-PSDKRPDPKKNYAKGKDKMIIALISNHCD-SYRIKLIRALKQFIDIDLYGRCKNNVNPELKGDCPLNSKECIQLQSRYKFTLSLENAYCKDYVTEKFYLNGLSRGNVPIVMNRATMSDPEVAPPGSYINILDFENLKMLADFLKKLAQNDQEYNKFHEWRQKYKI----GSKNRMCTTCE 888
+ ++ ADAV+FH +L + +HL + +R + +P W+W + +SP H + IFNW +YRRDS+IF PY ++P PS P K ++ ++SN + R +L R L + +D++GR PL + + ++Y+F LS EN+ +DY+TEKF+ N L G VP+V+ + P +++++ DF + + LA FL + N+ Y +F WR + ++ + R C C+
Sbjct: 82 RSLLASADAVVFHHRELQTRRSHLPLAQRPRGQP---WVWASMESP---SHTHGLSHLRGIFNWVLSYRRDSDIFVPYGRLEPHWGPSPPLP--------AKSRVAAWVVSNFQERQLRARLYRQLAPHLRVDVFGRANGR---------PLCASCLVPTVAQYRFYLSFENSQHRDYITEKFWRNALVAGTVPVVLGPPRATYEAFVPADAFVHVDDFGSARELAAFLTGM--NESRYQRFFAWRDRLRVRLFTDWRERFCAICD 322
The following BLAST results are available for this feature:
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