TCONS_00051881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051881
Unique NameTCONS_00051881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051881 ID=TCONS_00051881|Name=TCONS_00051881|organism=Clytia hemisphaerica|type=transcript|length=559bp
GgagatcatttaagaaggggggtgGTCTGACCACTTTCCGCACTATGCCA
AGGAGAGTGTATGTTGAAAACCTGCAACTGGGCTTCTAATTAGGTGGAAA
ACACTGGCATTGGGCTTAGCACTGGCATTGGGCTTAGCACTGTTAAAATC
ACTAATAATACTAACTGTTTTAGATtgcaaaaaagagaaaaatatttttg
tttgttcTAAATGCAGAGCGGTTACATTAGATTAAAAAGGATGTCTGCGT
CAAGTGATATTGAAGATCTTCCAAGCAGCCATGATGACTTGAGTAACGGT
CAGATTAGGATTCAGTCCTCTCACGCAAACCGACCAAAccttgaagatga
agatgaagaagatttGATAATGCAGAGTATCAAACGCAGTCCTTATGACG
ATGATCTTTGGCTCAATGAAGCAGAAGCCAATGCTCTTGGGAAATATGAT
GATTTCCATACAATTGATTGGTCCAGAGATAGAATGAGGGATCGTATCAG
GTTtcggaaagtcaaaaaaatgaaatatcaagGAACACTTATGGAAAGGA
TTAAGGTTA
Run BLAST on NCBI

protein sequence of TCONS_00051881-protein

>TCONS_00051881-protein ID=TCONS_00051881-protein|Name=TCONS_00051881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MQSGYIRLKRMSASSDIEDLPSSHDDLSNGQIRIQSSHANRPNLEDEDEE
DLIMQSIKRSPYDDDLWLNEAEANALGKYDDFHTIDWSRDRMRDRIRFRK
VKKMKYQGTLMERIKV
Run BLAST on NCBI

transcript from alignment at scaffold_205:142015..142573

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051881 ID=TCONS_00051881|Name=TCONS_00051881|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_205:142015..142573 (Clytia hemisphaerica)
TAACCTTAATCCTTTCCATAAGTGTTCcttgatatttcatttttttgact
ttccgaAACCTGATACGATCCCTCATTCTATCTCTGGACCAATCAATTGT
ATGGAAATCATCATATTTCCCAAGAGCATTGGCTTCTGCTTCATTGAGCC
AAAGATCATCGTCATAAGGACTGCGTTTGATACTCTGCATTATCaaatct
tcttcatcttcatcttcaaggTTTGGTCGGTTTGCGTGAGAGGACTGAAT
CCTAATCTGACCGTTACTCAAGTCATCATGGCTGCTTGGAAGATCTTCAA
TATCACTTGACGCAGACATCCTTTTTAATCTAATGTAACCGCTCTGCATT
TAgaacaaacaaaaatatttttctcttttttgcaATCTAAAACAGTTAGT
ATTATTAGTGATTTTAACAGTGCTAAGCCCAATGCCAGTGCTAAGCCCAA
TGCCAGTGTTTTCCACCTAATTAGAAGCCCAGTTGCAGGTTTTCAACATA
CACTCTCCTTGGCATAGTGCGGAAAGTGGTCAGACcaccccccttcttaa
atgatctcC

Coding sequence (CDS) from alignment at scaffold_205:142015..142573

>TCONS_00051881 ID=TCONS_00051881|Name=TCONS_00051881|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_205:142015..142573 (Clytia hemisphaerica)
AACCTTAATCCTTTCCATAAGTGTTCcttgatatttcatttttttgactt
tccgaAACCTGATACGATCCCTCATTCTATCTCTGGACCAATCAATTGTA
TGGAAATCATCATATTTCCCAAGAGCATTGGCTTCTGCTTCATTGAGCCA
AAGATCATCGTCATAAGGACTGCGTTTGATACTCTGCATTATCaaatctt
cttcatcttcatcttcaaggTTTGGTCGGTTTGCGTGAGAGGACTGAATC
CTAATCTGACCGTTACTCAAGTCATCATGGCTGCTTGGAAGATCTTCAAT
ATCACTTGACGCAGACATCCTTTTTAATCTAATGTAACCGCTCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032833XLOC_032833Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051881-proteinTCONS_00051881-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051881-exon-scaffold_205-1491911889:142015..142573TCONS_00051881-exon-scaffold_205-1491911889:142015..142573Clytia hemisphaericaexon
TCONS_00051881-exon-scaffold_205-1510915933:142015..142573TCONS_00051881-exon-scaffold_205-1510915933:142015..142573Clytia hemisphaericaexon
TCONS_00051881-exon-scaffold_205-1575043694:142015..142573TCONS_00051881-exon-scaffold_205-1575043694:142015..142573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:142015..142573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.60237	5.63427	1.26248	0.898281	12.8495	10.9099	14.0746	13.6645	10.421	13.1197	9.55076	10.1938	12.4043	10.9917	10.4181	12.9715	14.2296	15.5988	13.0381	12.8542	13.2307	14.3411	13.5981	17.0118	10.8831	9.03301	6.81058	6.08175	12.8258	11.1188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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