TCONS_00051808 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051808
Unique Name	TCONS_00051808
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3641

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_205:207204..219667+

transcript sequence

>TCONS_00051808 ID=TCONS_00051808|Name=TCONS_00051808|organism=Clytia hemisphaerica|type=transcript|length=3641bp
CACCTTAAAAAGATAAGGTCGGTCAGCGATACAACGCGATATACTTAACG
aatatttgttgattttcttttacGAAATATAAAGCAATCATCGCTTGAAG
GGACATTAAACAGCTTGCATACAAAGTTTACTAACTCTTGAGAGAAGAGA
AGTCAACATTTTCAATGTTAAAGAAAATCGTACTATTTATAGAGATTGCG
TTCGTTGATATTTTGACTAATTTGCAGACTACATTTAGACGctgttgttt
ttttgtggaCTTTTTTAAAGAATGATGTCTAAATTAACAATGTTTTCCCT
TGCGTTTTGCACGATCTTCTGTCTGTCGGTGGAATCAGCAAAATTAACCA
AAGATCACTCCAAATTGGATTTCATCGAGATCACATCATTCGAGAAAATC
GGAGATCGAAGGAAAAGAGATACTAAGAACCAGGACACTACCGAAGAATA
TGCACTGAAAACACCATCCAAAGATTACCATTTAGTACTAAAACCTTCCA
GCCATATCATTGGCCCGAACCTTTTCGAAGATGAGAAAAGTTGGGAAGAA
GAAAATTGTCATTACCAAggattggaaaaaaattttggtggaCAAGTTCT
TCTTTCAACATGTGGCGGAACGTTGAAtgGATTGTTGGTGGAcggcaaac
aaaacaaaacgtaTATGGTGGAATACGAGGAAAGCCTTGCGAATCACATC
GTGTATGAAGTTGACAAATTACCACAAAACAAACGAATCACCATGGCAAC
TGATATCCAAAGAAATGAAATTACAAAAGTTGAAGGCGTTAACATCAAAG
CAAACCACAGAGCGCGTCGAGACGTTTCAGTGGACGCATCAGACGTTTCA
GTGGACGCATCGGACGTGGAGAAGTATGCTTCATTGGTCATGGTGGTCGA
CAATTCAGCCTTCGTGCATCTTGGCAGCGATAAAACGAAAGTGATTCATT
TTGTACTGGCTATTGTCAATCACATGGACTTTTTATTTCGCCAAGCTAAC
ATACACGTCATTCTGACCCATCTTGAGATTTGGGATGTCAGTGACAAATT
CACGGTGACGGCAACAACAAGTGACAATCTGAACCACTTCACCCAGTACA
ATAAAGATATCATGATCAACCAAAATGGATGGAGGCATGATAATGCTCAT
TTCTTAACTCATGTAGACCAACAAGGTGGTTTGGTTGGACTTGGAGCCGT
TGGCAGCATTTGTGGTCAAGGTGGACTTTCACAAGCTATGTCTCAGATTT
GGAGTGACAACCCTTTGATAACAGCTGGTACGGTTGCCCATGAGTTTGGA
CACAATGTTGGATTATACCATTTTACATCAGAATGCATTTGTGATAACCC
ACCCTGTCTCATGTCTTCATATGCAAATTGGTCACCAGTTCGAGGCTTGA
CAGATTGTACAAAGAAAGTGATCGAGGATAGATGTTCACTTGGAAAATGT
TCCTGTTTGACTGACCAGCCTGCTGCGAGTTACATGGGAGCAACATGTGG
AAATGGGATCGTTGAGAAAGGTGAAGATTGTGATTGTGGACAACCCGAGT
ACTGCACAAATAAATGTTGTGATGCGTCCACGTGTAAATTTCAAACGCAT
GCACAATGCGCAGAAGGTGAATGCTGTACAGATGATTGTCAACTGAAAGC
AAAAGATGTGCTTTGTAGAGATGCACAGGGAGAATGTGATTTACCTGAGA
CTTGTGATGGAAAGCAAGCAACGTGCCCTTTGGATGTTTACTTGCAAGAT
TACCAAGATTGTAACTCAAAAACAaGCTATTGTTACAAAGGAAAATGTAC
AAAAACGTTGAATGAACAATGTGAAACTCTTTGGGGTAACGAGGCGGATC
ACAGCAGAACATGCATCCGAAATTACAAAGGAGACAAATTTGGTCATTGT
GGAACAGACAAAAATGGAAAGTTTATACCATGTGAAACTAAGAATGAATT
TTGTGGAAAGGTTCAGTGTCACGGAGATATCGCAagtcatttcattgttt
ttggaAGAAGTCGATCAACTGCTGTCTATGGAAGTCAATGCAGATCGGGA
TTAACGTATGTTGGGGAGAATATAAATCCAACCATGGCATTTGATGGAAC
CAAATGTGATGCAGGAAAGGTTTGTCAAAATCAGCAATGTATCGCAACTG
ATATCGCAAAATCAACTTCGAAGTGTGACGATCGTTGTCATTTTGGGAGA
TGTACAAACGTGGGAGCTTGTTATTGTCCACCGAAATTCAAATGTCCGGA
TTGTTCTCGCATGGACCCAAACAATATTAACGGACAGGTGTGCAGTGAAC
AACCTTCTCAAACTCATAGACATCATGATGGAAAACTCAACTGGGAAgAA
TACTTGGACCTCTTAACAAGCAACTTGTTCTTGACTCGATGGAAAGCACG
TGTTACATTCAAAAATCGTGTGTCGACAGGTGATACGCTCGATAAATACG
TCCCAACAAAGAAAATCGACAGTGTAGACCATGCCATAGACAATTTGTTC
AAAGATTTAAAAGACATGAACTTAGCACCGACAACAACGACGACTACAAC
AACTACAACGACAACGACAACACCTACAACGACACCAACAACGACACCAA
CAACGACACCAACAACGACACCAACAACGACTACGACAGTTGCACCACTT
TGCTTGGATGCGGTCGGGATGATCAATATCGGATGTCGTTCGAAAAGTGG
TGGCACAATGATCGCTAACTATCGTAATGCTATGGATTGGAATAATCCAT
CTGACTCAATAGAAAAAATGATTTGTGATTGTGCAAAGACTGCAAAAGAC
GATGGTTATGTTGGCTTTGGTTTGGTTTACTGGGGAGAATGTTGGGGCTA
TTCAACCAAAGATGAAGCTGTTAACCAATCAGGATCGACCAATTGTTCGA
ATGATCAATATAACTCTTGTGCAGAAGAAGATCGCATTTGTATAGGCAAA
GCTGATGCCTCGTACGCTTTTTTACTCTGAAGTGATTATTATGATTATAT
GATTTAGCGGAAGACTGCGAGGGAGTTGGTTGCTAAGTTTTGCGGACCGA
CAAGTCTACCAACAGAATAGGATCTAACTAACTCGCAAGTTATCTGTCTC
TATAACTCGACGAACAAATCTGCATTCACAATGCATGATCGAGTTATAGG
GGGTTAACATAGAGACCCCAATGTAATTAACAATACTTTATTGTTATTAC
TGGATCTCAGAAAAGAGCTTATTTGTGGTAGATTTTTAACCCTTAAACTT
TATAATAAATTGTAAATATATTATTTAGAATCTGAGAATTATAATATGAA
AGGAATAAgtttatatattataatatatttttgtgAGACAAATTTACATG
AGCAGGGCCCTTATAATGAACTGGGATGTGGAGGTGCCTAAAATATAGTG
AATAAGGTGTCAACTTCGATTTCGACCCCCTAGTATGCCTGAAAATGGCc
ctatttcaaattttggaatgAAATTAAGTTTTGTAAATTATTAATCGTTA
tcttaaaaacaactttttatttgagaaaaatgaggAGGCTATAAACCTAT
AACCCCGATGGCATGGGCCCTGATGGGTATACTTCAATTAAAGaagtttt
atttctaaaaatgaaaaatatatatgaaaaataaatgaaaa

Run BLAST on NCBI

transcript from alignment at scaffold_205:207204..219667+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051808 ID=TCONS_00051808|Name=TCONS_00051808|organism=Clytia hemisphaerica|type=transcript|length=12464bp|location=Sequence derived from alignment at scaffold_205:207204..219667+ (Clytia hemisphaerica)
CACCTTAAAAAGATAAGGTCGGTCAGCGATACAACGCGATATACTTAACG
aatatttgttgattttcttttacGAAATATAAAGCAATCATCGCTTGAAG
GGACATTAAACAGCTTGCATACAAAGTTTACTAACTCTTGAGAGAAGAGA
AGTCAACATTTTCAATGTTAAAGAAAATCGTACTATTTATAGAGATTGCG
TTCGTTGATATTTTGACTAATTTGCAGACTACATTTAGACGctgttgttt
ttttgtggaCTTTTTTAAAGAATGATGTCTAAATTAACAATGTTTTCCCT
TGCGTTTTGCACGATCTTCTGTCTGTCGGTGGAATCAGCAAAATTAACCA
AAGGTAAGATGAATATTTGATGACTAAGTATATCTCTAATCTAATACAAG
ATCCATTCTGCACGAACCACAGTCTGCTTGTTCCAAAGAAATGTGGGTAA
TTTGATGATCTGACCTTGATTTTGATGTGACTGTATTTCTTTAGCCAATC
ACAAGCTCAAAAGCTAATTTAACAATTATTTCAATTCTGGTGTGAAAACC
ACTTAAGCGGCCAAAGCATGGGCAGATTCTCTTATGCGTGAAGTAATCAG
GGTTTGGTTGGAGATTCATTAATAGAAATCAggatttgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgctCAAATGAAACTCTG
AATCCCTTTGAACTAAAAAAACCCTCAAacattaaaatcttttttaaaca
aacttcAACATGAACTTTTACATACTTGCAGATCACTCCAAATTGGATTT
CATCGAGATCACATCATTCGAGAAAATCGGAGATCGAAGGAAAAGAGATA
CTAAGAACCAGGTAACATCAATCGATAAGATTTCTGTTTACAAAACACAT
TGATATGTAGGCGGTGTAGATTTCAAATATTTGCCATGAGTATGAACTAT
TAGTTTATTCATTTGTCTAAATGTGTacataagaatatttttggagaaaa
cCTTCAAATACTGAAAGTATATCGCTTTCCGTATCGATGTCGACATATGC
CGACAAGAGCATTTTCGATTACTTTGCCGGTATTTGCCGACAAGAGAGGT
CTCTACCCATTTGCCAGaggtttttttaaagtttattgaaagttcgattt
tgaactagatacacgtttttttttttattagaacacctaaaatttggctg
agcctggatgtgcttatttttttagcaattttcagcctgaaatgttctta
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatctaaatcgac
aatatgatacaaaataaagagcacttaaatttggcaaaatttggacaata
tttgactctcgacttttgaagatccacccctaaattcggttaaaactgct
taaaaagaggaaaaaattgtagtttcttgacatttttttccaaactgagg
ctgggcatgttcttaagatgttcttaatgtttcgacgaatttcagcctat
atgttcttataaactaggttctaataaaaaaaaaaacgtgtagcacaTCA
TCATCACTAATTCAACTTTCAAGATACCAAAATCCTTattgaactaaaaa
aaaccTTATTACAACAAACGAATTTGGGTGTAAccaaaagaatttctttt
ttttttccctcCAGGACACTACCGAAGAATATGCACTGAAAACACCATCC
AAAGATTACCATTTAGTACTAAAACCTTCCAGGTAGATACATCAATTTCC
ctacatttttattcgaaatcGTCAAATCTTCACCTTTAAGCCCCGagaaa
aaagggcaaaaattcATTCAGAGTCGTAGTTATTTTTAACCAagtgaatt
tatttttcagCCATATCATTGGCCCGAACCTTTTCGAAGATGAGAAAAGT
TGGGAAGAAGAAAATTGTCATTACCAAggattggaaaaaaattttggtgg
aCAAGTTCTTCTTTCAACATGTGGCGGAACGTTGAAGTAAGATTACATTT
TGTTATTGAGAACATCcgatttttttgaagccttcggatgttcttaaatt
tttcagttttaagcctaaaaatgttcttaacatgttcttattttcactat
tttgtgaccatttttacctagtttcctaaaaaatcgggtgttttagagtc
tgcaaagccttaaaatgttcttaatttgttcttaaaatttttgccatcga
agccttatgttcttatatagtttgttcttataaaaaaacgtgtactttga
ACTACCAAAAGTTTCGAACACTTATTTCAACTGATCTATCTATTgtcttt
taataattttcattgtctgttcaaattataaaaatagtgGATTGTTGGTG
GAcggcaaacaaaacaaaacgtaTATGGTGGAATACGAGGTTAGTTAATT
TACCAATCTTTCAAAAAGGGATACACCTATTCTACATGGTGTACCATTTG
TTATGGAAGTTATCTTCTAAGAGTTCACCACTCTCTTCATACAATGCACG
TCTTTCATCTCTGGGCGCAACCGCAAACCAACCATTGTAACACTCAAAGA
ACCAAACGATATTGAAAACTGGAGCAAAACGGCATTAACATTTCCTGAAT
GACATTTCACATATCATTTGTTTTCAGGAAAGCCTTGCGAATCACATCAT
GTATGAAGTTGACAAATTACCACAAAACAAACGAATCACCATGGCAACTG
ATATCCAAAGAAATGAAATTACAAAAGTTGAAGGCGTTAACATCAAAGCA
AACCACAGAGTAAGTCAAAagattttgggccgaacgtcaATTAACAAAAC
TTCGTATAAACACAAATAATTACTATAGAAATCANTTCAGCCATATCATT
GGCCCGAACCTTTTCGAAGATGAGAAAAGTTGGGAACAAGAAAATTGTCA
TTACCAAggattggaaaaaaattttggtggaCAAGTCCTTCTTTCAACCT
GTGGTGGAACGTTGAAGTAAAAATTCTCATATATGTACCGAAAGTTTCGA
ACACTCGCCGCATCAGATCTTATTGTCTGATGACAATCTTTATTGTCAAT
CACCTGTTCAAAGTCCTTAACAGCAAACTCTAGCCCAGTCCCCTAGTTCA
TtcttttatgattctgatagcgtcCATCacatccatcagtaaaatcaaaa
agtggtgcaGTGACGAGATTGCTTATACAggaatcagaaaatatcatGAC
AATTAATCCTTTTTCTTTTCCAATAGTGGATTGTTGGTGGAcggcaaaca
aaacaaaacgtaTATGGTGGAATACGAGGTTAGTTAATTTACCAATCTTT
CAAAGAGGGATAGACCTATTCTACAAAGAGTTCACCACTCTCTTCATACA
ATGCACGTCTTTCATCTCTGGGCGCAACCGCAAACCAACCATTGTAACAC
TCAAAGAACCAAACTTTGGTACTTCTCGAAGCACCAAGACATTTTCTGAA
ATCTCCAACGATATTGAAAGTTGGAGCAAAATGGCATTAACATTTCCTCA
ATGACATTTCACATATTATATCTGTTTTCAGGAAAGCCTTGCGAATCACA
TCGTGTATGAAGTTGACAAATTACCACAAAACAAACGAATCACCATGGCA
ACTGATATCCAAAGAAATGAAATTACAAAAGTTGAAGGCGTTAACATCAA
AGCAAACCACAGAGTAAGTCAAAagattttgggccgaacgtcaATTAACA
AAACTTCGCATAAACACAAATAATTACTATAGAAATCATATTTAACCTCC
CAGTGCAATCTCATACACAGAATTATATTCCAgcactttttgtttttaat
gataATCCATGACGCATGCGCTCCGAGGGAAGGGGGGACTCAAGTTAAAC
GACCGCACGTGCAGTCTATAAGGGTGTGTTTTTTGGGCTTTTcaaagtac
actgtaagggtcgaaatgagagAGAGTGTACTCTATGTGTATAAAAAGTT
AGGAACACGAATTTCTTATGggtaaaaatctgaaaaaacttatctttttt
ttttgctttaaatggaCAGACAAAAGAAATTCCACCCTAAAGGTCGATCT
TTACCCATATTTACTCAAGCGAAGGGAAGGACTGTTATGAATGTGCATCC
AGTTGAATAGCACGGTAAAGAGTTctgattttaaattaattttcagGCGC
GTCGAGACGTTTCAGTGGACGCATCAGACGTTTCAGTGGACGCATCGGAC
GTGGAGAAGTATGCTTCATTGGTCATGGTGGTCGACAATTCAGCCGTAAG
TAACACAATGGGTTTCAATgggtttcattttttattgtcgAATGGAGTCG
TAGAGAATTATATATAATAGAGAGTAACTAACACTGGATAAAATTAGCTA
ATATATGTCCTTCATGTTTCCTTATTGCAACCAACTTACTtacaaaattt
gatttgaatgcGATTTATCAGATATTAGCGATGTGAAAGTCTCGCTAATT
GCAATCTCAGCCAGGTTCTTCTCAGTTGACGGGTCTGATGATTGATTGAA
TTTGATGGTTGTGTGATAACAAACTTTGTTCTCTACTATTTAGTTCGTGC
ATCTTGGCAGCGATAAAACGAAAGTGATTCATTTTGTACTGGCTATTGTC
AATCACATGGACTTTGTAAGTAAAATAAATCTCAACGAAATATACATACT
AACAAAGGGTGGACGAATGAAACAAACTTGAAAAGAGAATTTGGAATAAG
GCCTTGATATTATTCAGCTTTAAACCTATctactactttaggcgtacgaa
ctttcgcaagcagaaactttcgcgaggtcgaaaaatcgcgaaattcacga
catttacttttgcgaatttgaggataaaaatgagaattctcGACTTTAAA
AGGGCATTAAAGGATAATAATATGCCGAAAATTTGATGtttattacgatt
tcgaggTTTCATAGATTTCcaacttttttgagaatttttcacaagcataa
actttcgcgaattgccctgtttagaattttcaaagacatttactttcgca
aaaaacgccgaaaatcgcgaaaatcgcgaaagtttctgatcgcgaaagtt
tgtacgcctaaagtattctaTATACAAGTTTCGAGCATTTCTCTTCAGGT
CCTTTTTTAAGCTTGGCAGTTGGTTCgtttttattctaaattttattcat
ttataCTTTTCAGTTATTTCGCCAAGCTAACATACACGTCATTCTGACCC
ATCTTGAGATTTGGGATGTCAGTGACAAATTCACGGTGACGGCAACAACA
AGTGACAATCTGAACCACTTCACCCAGTACAATAAAGATATCATGATCAA
CCAAAATGGATGGAGGCATGATAATGCTCATTTCTTAACGTAAGAAAAAT
ATGAACTAAACTTTTACCAAGCTTGACGAGTAGAAAGTCCAACTAGAATC
GATATTTGACGTTTACATAATTATAGTCTTTTGATTGCCTTCACGAGGCC
CACAGTCAGCCGGTTCCGACTATCTATAGACTGAACGAATCATTGGAAGG
AACAGGGATGAGAACAGGGAGCTCCTTATTGTGGCGCTGATACCACTTGA
CTATCCCTTCCATGTTCCATTTCTCTATCACCTTAAGAACTATCCGTTAA
ATTTGCTTTCAAAAAAGTGTGATCTAGTGGTTACGACAGTCGTGAGCTCT
CCCAGTTGTCTTTGATTCACCTCTGATTCTTCAAGTCACGTGGTAAATAT
CGCTTTTTTGCACGGTTCTTCATCAACATGAGTATTAAATGAATAACCGA
TCAGAACGAAAAATTTCTCAGCATTTCTCATTATTCTTTGCATCACATTT
TCTAGTCATGTAGACCAACAAGGTGGTTTGGTTGGACTTGGAGCCGTTGG
CAGCATTTGTGGTCAAGGTGGACTTTCACAAGCTATGTCTCAGGTACAAT
TTATTCATTTTACATGAGCTAGAAACCAGGGGTACTCAAGACTGCCGGAG
CCGGAGGAGTTAGGAAAATAAACCCACTTTCAAATCTCCTTTTCAAAACG
ATGCAATGTTATCAGAATAAAATAAGGCTTGAAGTGATTTTATCTAGTCG
GTctagatgaaaaaatattaaatttaacgaatcaaatattttcaatcgGA
ATTTAAACCGTATGGGTGATGCAATATCCATCCTAAAAATTACACTTTCT
TGTTTATCGTATCACTTATATTAAAGCAAAAAACAACATCCTTTTATCAC
GAGAAATTCTTCTTCAGTGAGCGGAAATACcaaaagatttcttttaaatC
GCCAAGCAACACTGTAAAAACTCCTAAGATCCATATTTTGTCACTGCATG
ACAACGTTTAACAACGAAAAACCGACAAAAAAGAGCTAACGCCGACGGGC
AAACCATCAAACATACACGCCCTCTCCTTACTTTTCCGGTATTCTGATCA
CGAATTCGTAAAATCACAAACTTTTTATAATGCCTTcttgaaaaaggttt
gaaattttcgaaataatGTCAAACAAATCAACTTAAAGAGCTTGATTTCA
AGAGCAGCGACATAGGGCGGTAGTTAAAAGATAATACATTAAAGAGACGA
GTTGGTATAAAACTAGAGTTATAAATACTATAACCTGATCTCTCAATCTT
AGATTTGGAGTGACAACCCTTTGATAACAGCTGGTACGGTTGCCCATGAG
TTTGGACACAATGTTGGATTATACCATTTTACATCAGAATGCATTTGTGA
TAACCCACCCTGTCTCATGTCTTCATATGCAAAGTATGAACTACTCATTT
TGACAAGAAAAGTTTTGGGGATATAATGACCGTTCTATGGAAATGCAATG
ATAGTTCTTCGAAAAGCTTCGTTTCTCTGATTTTGCGTTGAGTTTGACCA
ATGATAGAGTTTGGTCAGGATAATTTTCGTTTTGAAGGCAATTATCAGAA
CGCAGAAATATTTAATGCTACTTGTAATTTCTAATCTATTTCTTTTGACT
TTAGTTGGTCACCAGTTCGAGGCTTGACAGATTGTACAAAGAAAGTGATC
GAGGATAGATGTTCACTTGGAAAATGTTCCTGTTTGACTGACCAGCCTGC
TGCGGTAAGAAGATTGCAAAACCGAGGATAAATTGGTTTAATATTTTTCG
CTGAAAACGGGGGAGATTGAAAACATAAAACCCAATCTTTTCCGGCAGGG
TGCGGGCATTTCTAACCTGGCTGTGAAATCATGGTGAACTTTCGAAGGTC
CATACTAGGACGAACCTTCAACATGGACCCTTCACTTggaattttcacaa
tttttcatcaatttcaaaCGTATTATTTCTTCTATTTGACAGAGTTACAT
GGGAGCAACATGTGGAAATGGGATCGTTGAGAAAGGTGAAGATTGTGATT
GTGGACAACCCGAGGTTCGTTTCTTGGAAGATTTGCTTGAATAAGATTTC
TCAAGGAAGAAAAGAAATAGCGTTTCCAAACTATTATAGAGACGCTAGAT
CTAATATTTTCGTAAAGAGTTACAGATACAACTAGAGAAGAAATCAGCTC
AACCTTAACGAATGAAATCGAAGTTAGACCATAGGAGAGTGTGGTAACGC
ACGAGGcggaatcttcgagttagaaaacttcgagttagcaattttcgagt
tagctaaattcaACATTCTGTAACTAAAATCTACACTATTAAATAAACTC
TTCTTCTTCTCTACTTAGTACTGCACAAATAAATGTTGTGATGCGTCCAC
GTGTAAATTTCAAACGCATGCACAATGCGCAGAAGGTGAATGCTGTACAG
ATGATTGTCAACTGAAAGCAAAAGATGTGCTTTGTAGAGATGCACAGGGA
GAATGTGATTTACCTGAGACTTGTGATGGAAAGCAAGCAACGGTGAGTGT
CCAAAGTCATCGTCTCAGTGTATTTAGACCCTGTAGAAAAGAAAATGCAT
AATCAGCAAATTTGGTTCAACCATTTCATTTACAGCTACTATAAATACAA
TTTTATCATTATGCAAATCGACATAAATGCATGAAGCTACATAAATtgag
attcttataaaaatgagtTGACTTTTTCAGTGCCCTTTGGATGTTTACTT
GCAAGATTACCAAGATTGTAACTCAAAAACAGTGAGTATTCTTTTTTTCT
GTTACCAAAAAATGtattaaatttaacaaaaatctttttccttgTATTNA
TTCTTTCTGTAACCAAAAAATGtattaaatttaacaaaaatctttttcct
tgtatatctttatttttcaaaattttgaagtgttttttcaaaatccatcG
TTGTCATGTCTTTTTTCTCCTTATTTCCTTTTAAAAGTTCCCTTTTCCAT
GATTTCCAAGTTTTCCCTAAAAAGCTTCTATCGCCAACAATTACCAGCCT
TACCATTCTGACCGGCCTGGCGATATTCTAGAAGTCAGATTTTCTAAACT
TTAGAATGTAATTAAAAATCTGTACCCAGTACCGTGGGATAACGATTaag
aattttcatttctttcagaGCTATTGTTACAAAGGAAAATGTACAAAAAC
GTTGAATGAACAATGTGAAACTCTTTGGGGTAACGGTAAGTCATATTTGT
TGATTCTTTGACctggaatacacgttttttgtgAGAACATCTAAATTtgt
tgaagccttcggatgttctaaactttttgagttttaagcttaaaaatttt
cttattttcgccattttgtaagtatttttgtaCGATTTCCTAAGGGATTT
GGTCCATGAAGActtctaaaatgttcttaacttgttcttaatattttaac
catcgaagccttatgttcttatatagtttgttcctataaaaaacgtttag
tgAACAAATGAAACCAAAGTAGATCTATTAAGTGTCACCAAATCATTCAA
CTAATCATTTACTTATTGATTAAAAAGCGGCAAGCAAACAAAACAAAGGA
AAGGTGTTTTAAACGCTGAACATCGTTTGTTTTTGCAGAGGCGGATCACA
GCAGAACATGCATCCGAAATTACAAAGGAGACAAATTTGGTCATTGTGGA
ACAGACAAAAATGGAAAGTTTATACCATGTGAAACTAAGTAAGAACTTCT
GAACTTGTTTTTGACTCAGGTCCATAAGGGCCCATAAGTAGAAATAAAAG
ATTGGCGCAGTAGAATTAACACCTCTTAATCAAGTTAAGATTTAGGGTGG
AATAGTTTACATTGTGTAATTATGCAACGAAACTTCACAGATACCAATTA
CTCGTGGGAAGTTCATATATCAAACTGAATTTTCTTTCAGGAATGAATTT
TGTGGAAAGGTTCAGTGTCACGGAGATATCGCAagtcatttcattgtttt
tggaAGAAGTCGATCAACTGCTGTCTATGGAAGTCAATGCAGGTAAAAAG
AATTGTAGTCATTTATAGCCATTGGACATTACTTTGAATCAGAAATCAAT
ATTGAGATTTTACACTAAAGCAATGCACCCTTTGACGCCCTGTTGGATGA
TTGTGATCGCGATATTATTGCCCCATAATCGTCTTCAAatttcttcagat
ttttttccttttgtcATTTCTAGATCGGGATTAACGTATGTTGGGGAGAA
TATAAATCCAACCATGGCATTTGATGGAACCAAATGTGATGCAGGAAAGG
TAAGAGGATTTCAGTTCTTTGTTAATTTATTAgttgatatttttctaaaa
tctagTTAATCATATTCACAAAaccccttcttcattttcgagaccaattt
ataatttttgtgatttttctttaCTGCACCTTGAAAAACTCTCAATCTTG
TTCATTCATACAGGTTTGTCAAAATCAGCAATGTATCGCAACTGATATCG
CAAAATCAACTTCGAAGTGTGACGATCGTTGTCATTTTGGGGTAAGTCTG
CAATAGCTTACATCTCTCGAGAGATACAACATATCAAATTTAAGATTTCT
CTCTTGACGGACCAAAGTCCACTAGAATATGCAAGAATAATAGCACTTGG
TTTAGAATCTTAAAGTGAAAACCCATCAATTAAAATAGTTCCAATGTTTC
TATCCCATAGAGATGTACAAACGTGGGAGCTTGTTATTGTCCACCGAAAT
TCAAATGTCCGGATTGTTCTCGCATGGACCCAAACAATATTAACGGACAG
GTGTGCAGTGAACAACCTTCTCAAACTCATGTAAGTTAAAACACTAAATT
AAATTATTATAACACCTTCAATATCAGATTGAGAGCACTCCATCAATGTC
ATGATAGGTTTTGCGACTTTACTCCTCCGTGCTAAAATGTATTTAAATTA
CAAAGCCTCATTTGCATGCATCtattttatcttcattttctctCGTTTAT
TATAGAGACATCATGATGGAAAACTCAACTGGGAAggtaatttcatcaaa
atattacTTACTTATTTACTTCCTTACTTTCTAGACATACTATACTTAAC
AAATAGTGAGCATCGATAGCCTTCAACAAGCTATTTCATAATCTTATCGA
TAATTCGTGGACCTGCAGAGAATCATAACTCTAAAAAGATTCCTGAAAAT
TGACCTTCGACTGACATATGATTTGTTATGTCCCTGAAATTGCCTCTACG
ACATTGACCATGACAATAAAACAGATAGAAGACAGACAGAAACGAAATGA
CAGCACACTCCATCACACTCTCACATATTTTACTTTAACCATTAACAGAA
TACTTGGACCTCTTAACAAGCAACTTGTTCTTGACTCGATGGAAAGCACG
TGTTACATTCAAAAATCGTGTGTCGACAGGTGATACGCTCGATAAATACG
TCCCAACAAAGAAAATCGACAGTGTAGACCATGCCATAGACAATTTGTTC
AAAGATTTAAAAGACATGAACTTAGCACCGACAACAACGACGACTACAAC
AACTACAACGACAACGACAACACCTACAACGACACCAACAACGACACCAA
CAACGACACCAACAACGACACCAACAACGACTACGACAGGTGTGTGAAGA
CTATATTATATTAATACCAGCcttaactgttcttatttttccgtGATATT
CAGGCTTTAAATGTTCTCAAAATGGTCTTTATAAAGAGTTTAAAAGGTAG
CATTTTGGCACCTTTTCTTCTCCTCCCACTTAACGAACGGAACGAAGGAA
ATACAATGTCTGTCAGGGTATCAAAAAGATCCATAAAATAATTTGGTATT
TTTCTCACTATTTTCTTTTCTAGTTGCACCACTTTGCTTGGATGCGGTCG
GGATGATCAATATCGGATGTCGTTCGAAAAGTGGTGGCACAATGATCGCT
AACTATCGTAATGCTATGGATTGGAATAATCCATCTGACTCAATAGAAAA
gtaagttttacttttttatcaacCCTTGATATCAGAACTTTAAAGTTATT
TGTGGCAACGGCATTAAATTGAGCAAAAAATAGGCCAGCCCTTTGCATAT
TTCTTCAAATACCTTATTATAATCTGCCACTTTACCAAGTAGACAATTTC
TTTTGTCTAACTTTTTGATTGGTATGCTAAAGTAATTAAATTaaactaaa
actaaaacttaaactaaaatttaaaatctccATTTCCAGAATGATTTGTG
ATTGTGCAAAGACTGCAAAAGACGATGGTTATGTTGGCTTTGGTTTGGTT
TACTGGGGAGAATGTTGGGGCTATTCAACCAAAGATGAAGCTGTTAACCA
ATCAGGATCGACCAATTGTTCGAATGATCAATATAACTCTTGTGCAGAAG
AAGATCGCATTTGTATAGGCAAAGCTGATGCCTCGTACGCTTTTTTACTC
TGAAGTGATTATTATGATTATATGATTTAGCGGAAGACTGCGAGGGAGTT
GGTTGCTAAGTTTTGCGGACCGACAAGTCTACCAACAGAATAGGATCTAA
CTAACTCGCAAGTTATCTGTCTCTATAACTCGACGAACAAATCTGCATTC
ACAATGCATGATCGAGTTATAGGGGGTTAACATAGAGACCCCAATGTAAT
TAACAATACTTTATTGTTATTACTGGATCTCAGAAAAGAGCTTATTTGTG
GTAGATTTTTAACCCTTAAACTTTATAATAAATTGTAAATATATTATTTA
GAATCTGAGAATTATAATATGAAAGGAATAAgtttatatattataatata
tttttgtgAGACAAATTTACATGAGCAGGGCCCTTATAATGAACTGGGAT
GTGGAGGTGCCTAAAATATAGTGAATAAGGTGTCAACTTCGATTTCGACC
CCCTAGTATGCCTGAAAATGGCcctatttcaaattttggaatgAAATTAA
GTTTTGTAAATTATTAATCGTTAtcttaaaaacaactttttatttgagaa
aaatgaggAGGCTATAAACCTATAACCCCGATGGCATGGGCCCTGATGGG
TATACTTCAATTAAAGaagttttatttctaaaaatgaaaaatatatatga
aaaataaatgaaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032802	XLOC_032802	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_205	supercontig	scaffold_205:207204..219667 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.074451	0	3.83497e-05	0	0	1.18611	0.000236632	1.50808e-06	4.04907e-05	3.62271e-05	4.37565e-07	0	4.45817e-10	0	0	0	0	7.16761e-07	0	0.000158853	0	0	0	0	0.0562724	0	0.129822	0.312156

Blast

[Close]

BLAST of TCONS_00051808 vs. Swiss-Prot (Human)
Match: ADA12 (Disintegrin and metalloproteinase domain-containing protein 12 OS=Homo sapiens GN=ADAM12 PE=1 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 1.788e-72
Identity = 198/590 (33.56%), Postives = 290/590 (49.15%), Query Frame = 2

Query:  554 NCHYQGLEKNFG-GQVLLSTCGGTLNGLLVDGKQNKTYMVEYEESLANHIVYEVDKLPQNKRITMATDIQRNEITKVEGVNIKANHXXXXXXXXXXXXXXXXXXXXEKYASLVMVVDNSAFVHLGSDKTKVIHFVLAIVNHMDFLFRQANIHVILTHLEIWDVSDKFTVTATTSDNLNHFTQYNKDIMINQNGWRHDNAHFLTHVDXXXXXXXXXXXXSICGQGGLSQAMSQIWSDNPLITAGTVAHEFGHNVGLYHFTSE--CIC----DNPPCLMSSYANWSPVRGLTDCTKKVIEDRCSLGKCSCLTDQPAA--SYMGATCGNGIVEKGEDCDCGQPEYCTNKCCDASTCKFQTHAQCAEGECCTDDCQLKAKDVLCRDAQGECDLPETCDGKQATCPLDVYLQDYQDCNSKTSYCYKGKCTKTLNEQCETLWGNEADHSR-TCIR--NYKGDKFGHCGTDKNGKFIPCETKNEFCGKVQCHGDIASHFI-VFGRSRSTAVYGSQ-----CRSGLTYVGENI-NPTMAFDGTKCDAGKVCQNQQCIATDIAKSTSKCDDRCH-FGRCTNVGACYCPPKFKCPDCSRM 2263
            +C+Y G  + +    V LSTC G L GL+V   +N++Y++E  +S  N   Y++    + K +  +     N        N+ A +         A     +     KY  LV+V DN  F   G D  KV   ++ I NH+D  +R  NI ++L  +E+W+  DK +V+     +L+ F  + K  ++ +    HDNA  ++ V  QG  +G+  + S+C     S  +    SDNPL  A T+AHE GHN G+ H T +  C C    +   C+M++   +      + C++K +E     G   CL + P    S+ G  CGN  VE+GE+CDCG+PE C N+CC+A+TC  +  A CA G CC +DCQLK     CRD+   CDLPE C G    CP +VYL D   C     YCY G C +T  +QC TLWG  A  +   C    N  GD +G+CG      F  CE ++  CGK+QC G  +   I     S  T +   Q     CR    Y+G+++ +P +   GTKC  GK+C N+QC    +     +C  +CH  G C N   C+C   +  P C + 
Sbjct:  118 HCYYHGHVRGYSDSAVSLSTCSG-LRGLIVF--ENESYVLEPMKSATNR--YKLFPAKKLKSVRGSCGSHHNT------PNLAAKNVFPPPSQTWARRHKRETLKATKYVELVIVADNREFQRQGKDLEKVKQRLIEIANHVDKFYRPLNIRIVLVGVEVWNDMDKCSVSQDPFTSLHEFLDWRKMKLLPRKS--HDNAQLVSGVYFQGTTIGMAPIMSMC-TADQSGGIVMDHSDNPLGAAVTLAHELGHNFGMNHDTLDRGCSCQMAVEKGGCIMNASTGYPFPMVFSSCSRKDLETSLEKGMGVCLFNLPEVRESFGGQKCGNRFVEEGEECDCGEPEECMNRCCNATTCTLKPDAVCAHGLCC-EDCQLKPAGTACRDSSNSCDLPEFCTGASPHCPANVYLHDGHSCQDVDGYCYNGIC-QTHEQQCVTLWGPGAKPAPGICFERVNSAGDPYGNCGKVSKSSFAKCEMRDAKCGKIQCQGGASRPVIGTNAVSIETNIPLQQGGRILCRGTHVYLGDDMPDPGLVLAGTKCADGKICLNRQCQNISVF-GVHECAMQCHGRGVCNNRKNCHCEAHWAPPFCDKF 690

The following BLAST results are available for this feature:

BLAST of TCONS_00051808 vs. Swiss-Prot (Human)

BLAST of TCONS_00051808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA12	1.788e-72	33.56	Disintegrin and metalloproteinase domain-containin...	[more]

You are here

TCONS_00051808 (transcript) - C. hemisphaerica