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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051804 ID=TCONS_00051804|Name=TCONS_00051804|organism=Clytia hemisphaerica|type=transcript|length=1953bp
CGTCGATAGAAAGAAACGTTATTTTAATTTTGTTCTTGCGGTGATAGGAT
GCAGTGAACTTTGCTGTTTTATGCAGTTATTGTTTCAGGCTTGAATCATG
GGTAAACCGAGAAGAAACGATGCACAATTAGACAAGAGAGCACTTCGGAA
GAAAGCTGAACATCAAGGAAGAACAATTGAAGAAGAGGCTGTGGAGGAAA
AAGAGTCACTTCATGAGATTCCTCAACGATACAACGATAGTCCAGAGCCT
AAACGAGgacgaaagaaaaacaaaagaccGAAGGACGCTCGACCTGAAGA
AGTTTGCTGTACCATCACTACTATTCCTTTCATAGACGAATCCGCCCAGA
AACTGGATCAAGCTACAGGTTATACACCAGAGGAAAATAAACCTAAGAAA
GAGACAAATTCAAAGCGTAAACTTTgtgatgaaatcaaagttataGAACC
GCTAACAGCTAAAATCGAGATTGTAGAAATTGTTCGACCAGAACCTATCG
TTCATGACATTCCATTGATCCAACCGTGTACTGCAAAGAAAATGAATAAC
TTCATGCGTAAACAGAACTATAAGCGCCCGGATGAGAAAGTCGAGGATGT
ATTTGACGTGGATGCCGAAATGCAACGTATTTCAGAGTTGTTGGGAGATG
AGGAATCTCTTCCCAGTTTGATGGAATTACaagaatatcaaaagaaagaa
tcGGATCGTGTTACCAAGAAGAAATCTGTAACCAGAACCAACTTCAAGaa
tcattttgaaaatgctCATCAAGCAGGAAAATTTGCGATGAAGATCGAAT
TGTTTCAAGAAGCTATTGAACAGGttgagaaaacttttggtttagaTTCT
TACAAACCCATCGGTGATATCCCGAGAAATGACGCAGATAAAATCACGAG
AAGACTGCTAAATATAAGACAAGACTTTTTGAACGAAGTTGTCGATTTGC
GTTTGAAGACGAATAAGTGTAATGAAGTTTACATCAGGCTGTTGGATCAG
TACAAAACTCACCAGAGCGTCGCCGATGCCTTTCATGAACGAGCAAAGGA
GAAGTCAAATATCGGTAAAAACGTCTTgaagaatcaaatcaaattacTGG
ATGAAGCTTATTCGCATCTCTCTACCAAAGGTTTGAGTTCGTTTTCCAAA
AGACCATCAACAGCACTCAAAGACTGGCAAAAGATGATCTTCTCATTCGC
AAGCAAGACGCAGAATTATGAAGAAACCATTCAGCGCTTGACTGAAAAAT
ATTCGAACGGAGCAGAGCAGAAAAGAAACGCATCAGAAGAAACTGGAAGG
GTTTGTTGAGGCGTATAAAAAGGGCCTCAAAAAGCGAGCAGGAAGCCAAC
AAAATTACGAAGATCGTGTGCTTAAGAGTTGTGAGTACAAAGAGGTCTGT
CGAACACGGGGAAACATCAAACAGAAGATTCAAAAGCAAAGAGAAATGTT
CAAACAAGATAAAGTCGATCTTGAAAAAACACTCGATGAAGTCCAAGATG
TCGGCACCAAACCACCGAATTATGATCATCTAACGGCCAAATGGCGTCAG
ATCCGGGAAGAGTTAGCAACTGACATCAAACGTACTGCAGAGCTGAGAAA
AAGTATCAACTCGATTCAAGAAAGTGTTCGATCGAAAGCTGGTCAAGTTT
TAGAATTACAAATTAATGATGACCATTTAACAAAGGAACTTAACACCCTC
TTGGAAGAAAAGGATTTCGTCAACCGGCAATTTTACATCGCGGAGTATCA
GCGTAAGAAATTGAACTTACAGTATAACCGAATAGAATTTGCTCACTGAA
TTTTGATGCAATTTTTTACAgagttttttaaaatattttcatacataaaa
catattttttaaatgtttttctcaAAAGGTTTGGACCCGATTATTAGACT
GAATATGAAAAATTATACAGAGGGCTTATTTGAATCTAAGTGTTTAAACT
AAG Run BLAST on NCBI protein sequence of TCONS_00051804-protein >TCONS_00051804-protein ID=TCONS_00051804-protein|Name=TCONS_00051804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MGKPRRNDAQLDKRALRKKAEHQGRTIEEEAVEEKESLHEIPQRYNDSPE
PKRGRKKNKRPKDARPEEVCCTITTIPFIDESAQKLDQATGYTPEENKPK
KETNSKRKLCDEIKVIEPLTAKIEIVEIVRPEPIVHDIPLIQPCTAKKMN
NFMRKQNYKRPDEKVEDVFDVDAEMQRISELLGDEESLPSLMELQEYQKK
ESDRVTKKKSVTRTNFKNHFENAHQAGKFAMKIELFQEAIEQVEKTFGLD
SYKPIGDIPRNDADKITRRLLNIRQDFLNEVVDLRLKTNKCNEVYIRLLD
QYKTHQSVADAFHERAKEKSNIGKNVLKNQIKLLDEAYSHLSTKGLSSFS
KRPSTALKDWQKMIFSFASKTQNYEETIQRLTEKYSNGAEQKRNASEETG
RVC Run BLAST on NCBI transcript from alignment at scaffold_205:193006..195647+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051804 ID=TCONS_00051804|Name=TCONS_00051804|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at scaffold_205:193006..195647+ (Clytia hemisphaerica)
CGTCGATAGAAAGAAACGTTATTTTAATTTTGTTCTTGCGGTGATAGGAT
GCAGTGAACTTTGCTGTTTTATGCAGTTATTGTTTCAGGCTTGAATCATG
GGTAAACCGAGAAGAAACGATGCACAATTAGACAAGAGAGCACTTCGGAA
GAAAGCTGAACATCAAGGAAGAACAATTGAAGTAAGATTTTAATTCTTGG
GCCAGCACATAGGTTACAATGAGATAAGTTAAAGTTAAACTAGCCCACTA
GCCCAGCCCTGTCTCGATACGTCCTTTGGATATTTTCACAATGGTATCAT
AAAGAGTAATGAAATTCTGACAAGTGCTGGCTTCTAAACTCAAAAAGAGT
TTTGGATTCTAAATTGTACTTATTGAACTTAATCTAGTTTGTCAAAAAGC
TCTGGACTACCGTCAGTTGGCTTTACCATTCCCCTTTTAAAGAACACAAC
ACAGACTACCTCCTCGAAAAGCGTCGTCCGCGTTATAACTGTGAAAAATG
TACTACCTACTTCACCTACACAATAACTTCACTTCCTTACAGCCTCTTCC
TGAAAGAAAACGATAGTAATAATATGTCGGAGATTTTTTCCCATTTGCAT
CTTAGGGAAGTGAAGTTATTGTGTAGGTGAAGTAGGTAGTACATTTTTCA
CAGGTATAACGCGGACGACGTTTTTCGAGGAGGTAGTCTGTGTTGTGTTC
TTTAAAAGGGGAATGGTAAAGCCAACTGACGGTAGTCCAGAGCTTTTTGA
CAAACTAGATTAAGTTCAATAAGTACAATTTAGAATCCAAAACTCTTTTT
GAGTTTAGAAGCCAGCACTTGTCAGAATTTCATTACTCTTTATGATACCA
TTGTATGTATTGTCTTTCAGGAAGAGGCTGTGGAGGAAAAAGAGTCACTT
CATGAGATTCCTCAACGATACAACGATAGTCCAGAGCCTAAACGAGgacg
aaagaaaaacaaaagaccGAAGGACGCTCGACCTGAAGAAGTTTGCTGTA
CCATCACTACTATTCCTTTCATAGACGAATCCGCCCAGAAACTGGATCAA
GCTACAGGTTATACACCAGAGGAAAATAAACCTAAGAAAGAGACAAATTC
AAAGCGTAAACTTTgtgatgaaatcaaagttataGAACCGCTAACAGCTA
AAATCGAGATTGTAGAAATTGTTCGACCAGAACCTATCGTTCATGACATT
CCATTGATCCAACCGTGTACTGCAAAGAAAATGAATAACTTCATGCGTAA
ACAGAACTATAAGCGCCCGGATGAGAAAGTCGAGGATGTATTTGACGTGG
ATGCCGAAATGCAACGTATTTCAGAGTTGTTGGGAGATGAGGAATCTCTT
CCCAGTTTGATGGAATTACaagaatatcaaaagaaagaatcGGATCGTGT
TACCAAGAAGAAATCTGTAACCAGAACCAACTTCAAGaatcattttgaaa
atgctCATCAAGCAGGAAAATTTGCGATGAAGATCGAATTGTTTCAAGAA
GCTATTGAACAGGttgagaaaacttttggtttagaTTCTTACAAACCCAT
CGGTGATATCCCGAGAAATGACGCAGATAAAATCACGAGAAGACTGCTAA
ATATAAGACAAGACTTTTTGAACGAAGTTGTCGATTTGCGTTTGAAGACG
AATAAGTGTAATGAAGTTTACATCAGGCTGTTGGATCAGTACAAAACTCA
CCAGAGCGTCGCCGATGCCTTTCATGAACGAGCAAAGGAGAAGTCAAATA
TCGGTAAAAACGTCTTgaagaatcaaatcaaattacTGGATGAAGCTTAT
TCGCATCTCTCTACCAAAGGTTTGAGTTCGTTTTCCAAAAGACCATCAAC
AGCACTCAAAGACTGGCAAAAGATGATCTTCTCATTCGCAAGCAAGACGC
AGAATTATGAAGAAACCATTCAGCGCTTGACTGAAAAATATTCGAACGGA
GCAGAGCAGAAAAGAAACGCATCAGAAGAAACTGGAAGGGTTTGTTGAGG
CGTATAAAAAGGGCCTCAAAAAGCGAGCAGGAAGCCAACAAAATTACGAA
GATCGTGTGCTTAAGAGTTGTGAGTACAAAGAGGTCTGTCGAACACGGGG
AAACATCAAACAGAAGATTCAAAAGCAAAGAGAAATGTTCAAACAAGATA
AAGTCGATCTTGAAAAAACACTCGATGAAGTCCAAGATGTCGGCACCAAA
CCACCGAATTATGATCATCTAACGGCCAAATGGCGTCAGATCCGGGAAGA
GTTAGCAACTGACATCAAACGTACTGCAGAGCTGAGAAAAAGTATCAACT
CGATTCAAGAAAGTGTTCGATCGAAAGCTGGTCAAGTTTTAGAATTACAA
ATTAATGATGACCATTTAACAAAGGAACTTAACACCCTCTTGGAAGAAAA
GGATTTCGTCAACCGGCAATTTTACATCGCGGAGTATCAGCGTAAGAAAT
TGAACTTACAGTATAACCGAATAGAATTTGCTCACTGAATTTTGATGCAA
TTTTTTACAgagttttttaaaatattttcatacataaaacatatttttta
aatgtttttctcaAAAGGTTTGGACCCGATTATTAGACTGAATATGAAAA
ATTATACAGAGGGCTTATTTGAATCTAAGTGTTTAAACTAAG Coding sequence (CDS) from alignment at scaffold_205:193006..195647+ >TCONS_00051804 ID=TCONS_00051804|Name=TCONS_00051804|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_205:193006..195647+ (Clytia hemisphaerica)
ATGGGTAAACCGAGAAGAAACGATGCACAATTAGACAAGAGAGCACTTCG
GAAGAAAGCTGAACATCAAGGAAGAACAATTGAAGAAGAGGCTGTGGAGG
AAAAAGAGTCACTTCATGAGATTCCTCAACGATACAACGATAGTCCAGAG
CCTAAACGAGgacgaaagaaaaacaaaagaccGAAGGACGCTCGACCTGA
AGAAGTTTGCTGTACCATCACTACTATTCCTTTCATAGACGAATCCGCCC
AGAAACTGGATCAAGCTACAGGTTATACACCAGAGGAAAATAAACCTAAG
AAAGAGACAAATTCAAAGCGTAAACTTTgtgatgaaatcaaagttataGA
ACCGCTAACAGCTAAAATCGAGATTGTAGAAATTGTTCGACCAGAACCTA
TCGTTCATGACATTCCATTGATCCAACCGTGTACTGCAAAGAAAATGAAT
AACTTCATGCGTAAACAGAACTATAAGCGCCCGGATGAGAAAGTCGAGGA
TGTATTTGACGTGGATGCCGAAATGCAACGTATTTCAGAGTTGTTGGGAG
ATGAGGAATCTCTTCCCAGTTTGATGGAATTACaagaatatcaaaagaaa
gaatcGGATCGTGTTACCAAGAAGAAATCTGTAACCAGAACCAACTTCAA
GaatcattttgaaaatgctCATCAAGCAGGAAAATTTGCGATGAAGATCG
AATTGTTTCAAGAAGCTATTGAACAGGttgagaaaacttttggtttagaT
TCTTACAAACCCATCGGTGATATCCCGAGAAATGACGCAGATAAAATCAC
GAGAAGACTGCTAAATATAAGACAAGACTTTTTGAACGAAGTTGTCGATT
TGCGTTTGAAGACGAATAAGTGTAATGAAGTTTACATCAGGCTGTTGGAT
CAGTACAAAACTCACCAGAGCGTCGCCGATGCCTTTCATGAACGAGCAAA
GGAGAAGTCAAATATCGGTAAAAACGTCTTgaagaatcaaatcaaattac
TGGATGAAGCTTATTCGCATCTCTCTACCAAAGGTTTGAGTTCGTTTTCC
AAAAGACCATCAACAGCACTCAAAGACTGGCAAAAGATGATCTTCTCATT
CGCAAGCAAGACGCAGAATTATGAAGAAACCATTCAGCGCTTGACTGAAA
AATATTCGAACGGAGCAGAGCAGAAAAGAAACGCATCAGAAGAAACTGGA
AGGGTTTGTTGAATGGGTAAACCGAGAAGAAACGATGCACAATTAGACAA
GAGAGCACTTCGGAAGAAAGCTGAACATCAAGGAAGAACAATTGAAGAAG
AGGCTGTGGAGGAAAAAGAGTCACTTCATGAGATTCCTCAACGATACAAC
GATAGTCCAGAGCCTAAACGAGgacgaaagaaaaacaaaagaccGAAGGA
CGCTCGACCTGAAGAAGTTTGCTGTACCATCACTACTATTCCTTTCATAG
ACGAATCCGCCCAGAAACTGGATCAAGCTACAGGTTATACACCAGAGGAA
AATAAACCTAAGAAAGAGACAAATTCAAAGCGTAAACTTTgtgatgaaat
caaagttataGAACCGCTAACAGCTAAAATCGAGATTGTAGAAATTGTTC
GACCAGAACCTATCGTTCATGACATTCCATTGATCCAACCGTGTACTGCA
AAGAAAATGAATAACTTCATGCGTAAACAGAACTATAAGCGCCCGGATGA
GAAAGTCGAGGATGTATTTGACGTGGATGCCGAAATGCAACGTATTTCAG
AGTTGTTGGGAGATGAGGAATCTCTTCCCAGTTTGATGGAATTACaagaa
tatcaaaagaaagaatcGGATCGTGTTACCAAGAAGAAATCTGTAACCAG
AACCAACTTCAAGaatcattttgaaaatgctCATCAAGCAGGAAAATTTG
CGATGAAGATCGAATTGTTTCAAGAAGCTATTGAACAGGttgagaaaact
tttggtttagaTTCTTACAAACCCATCGGTGATATCCCGAGAAATGACGC
AGATAAAATCACGAGAAGACTGCTAAATATAAGACAAGACTTTTTGAACG
AAGTTGTCGATTTGCGTTTGAAGACGAATAAGTGTAATGAAGTTTACATC
AGGCTGTTGGATCAGTACAAAACTCACCAGAGCGTCGCCGATGCCTTTCA
TGAACGAGCAAAGGAGAAGTCAAATATCGGTAAAAACGTCTTgaagaatc
aaatcaaattacTGGATGAAGCTTATTCGCATCTCTCTACCAAAGGTTTG
AGTTCGTTTTCCAAAAGACCATCAACAGCACTCAAAGACTGGCAAAAGAT
GATCTTCTCATTCGCAAGCAAGACGCAGAATTATGAAGAAACCATTCAGC
GCTTGACTGAAAAATATTCGAACGGAGCAGAGCAGAAAAGAAACGCATCA
GAAGAAACTGGAAGGGTTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051804-exon-scaffold_205-1491911889:193006..193186 | TCONS_00051804-exon-scaffold_205-1491911889:193006..193186 | Clytia hemisphaerica | exon |
| TCONS_00051804-exon-scaffold_205-1510915933:193006..193186 | TCONS_00051804-exon-scaffold_205-1510915933:193006..193186 | Clytia hemisphaerica | exon |
| TCONS_00051804-exon-scaffold_205-1575043694:193006..193186 | TCONS_00051804-exon-scaffold_205-1575043694:193006..193186 | Clytia hemisphaerica | exon |
| TCONS_00051804-exon-scaffold_205-1491911889:193876..195647 | TCONS_00051804-exon-scaffold_205-1491911889:193876..195647 | Clytia hemisphaerica | exon |
| TCONS_00051804-exon-scaffold_205-1510915933:193876..195647 | TCONS_00051804-exon-scaffold_205-1510915933:193876..195647 | Clytia hemisphaerica | exon |
| TCONS_00051804-exon-scaffold_205-1575043694:193876..195647 | TCONS_00051804-exon-scaffold_205-1575043694:193876..195647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:193006..195647 + |
Blast
The following BLAST results are available for this feature:
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