TCONS_00051804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051804
Unique NameTCONS_00051804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051804 ID=TCONS_00051804|Name=TCONS_00051804|organism=Clytia hemisphaerica|type=transcript|length=1953bp
CGTCGATAGAAAGAAACGTTATTTTAATTTTGTTCTTGCGGTGATAGGAT
GCAGTGAACTTTGCTGTTTTATGCAGTTATTGTTTCAGGCTTGAATCATG
GGTAAACCGAGAAGAAACGATGCACAATTAGACAAGAGAGCACTTCGGAA
GAAAGCTGAACATCAAGGAAGAACAATTGAAGAAGAGGCTGTGGAGGAAA
AAGAGTCACTTCATGAGATTCCTCAACGATACAACGATAGTCCAGAGCCT
AAACGAGgacgaaagaaaaacaaaagaccGAAGGACGCTCGACCTGAAGA
AGTTTGCTGTACCATCACTACTATTCCTTTCATAGACGAATCCGCCCAGA
AACTGGATCAAGCTACAGGTTATACACCAGAGGAAAATAAACCTAAGAAA
GAGACAAATTCAAAGCGTAAACTTTgtgatgaaatcaaagttataGAACC
GCTAACAGCTAAAATCGAGATTGTAGAAATTGTTCGACCAGAACCTATCG
TTCATGACATTCCATTGATCCAACCGTGTACTGCAAAGAAAATGAATAAC
TTCATGCGTAAACAGAACTATAAGCGCCCGGATGAGAAAGTCGAGGATGT
ATTTGACGTGGATGCCGAAATGCAACGTATTTCAGAGTTGTTGGGAGATG
AGGAATCTCTTCCCAGTTTGATGGAATTACaagaatatcaaaagaaagaa
tcGGATCGTGTTACCAAGAAGAAATCTGTAACCAGAACCAACTTCAAGaa
tcattttgaaaatgctCATCAAGCAGGAAAATTTGCGATGAAGATCGAAT
TGTTTCAAGAAGCTATTGAACAGGttgagaaaacttttggtttagaTTCT
TACAAACCCATCGGTGATATCCCGAGAAATGACGCAGATAAAATCACGAG
AAGACTGCTAAATATAAGACAAGACTTTTTGAACGAAGTTGTCGATTTGC
GTTTGAAGACGAATAAGTGTAATGAAGTTTACATCAGGCTGTTGGATCAG
TACAAAACTCACCAGAGCGTCGCCGATGCCTTTCATGAACGAGCAAAGGA
GAAGTCAAATATCGGTAAAAACGTCTTgaagaatcaaatcaaattacTGG
ATGAAGCTTATTCGCATCTCTCTACCAAAGGTTTGAGTTCGTTTTCCAAA
AGACCATCAACAGCACTCAAAGACTGGCAAAAGATGATCTTCTCATTCGC
AAGCAAGACGCAGAATTATGAAGAAACCATTCAGCGCTTGACTGAAAAAT
ATTCGAACGGAGCAGAGCAGAAAAGAAACGCATCAGAAGAAACTGGAAGG
GTTTGTTGAGGCGTATAAAAAGGGCCTCAAAAAGCGAGCAGGAAGCCAAC
AAAATTACGAAGATCGTGTGCTTAAGAGTTGTGAGTACAAAGAGGTCTGT
CGAACACGGGGAAACATCAAACAGAAGATTCAAAAGCAAAGAGAAATGTT
CAAACAAGATAAAGTCGATCTTGAAAAAACACTCGATGAAGTCCAAGATG
TCGGCACCAAACCACCGAATTATGATCATCTAACGGCCAAATGGCGTCAG
ATCCGGGAAGAGTTAGCAACTGACATCAAACGTACTGCAGAGCTGAGAAA
AAGTATCAACTCGATTCAAGAAAGTGTTCGATCGAAAGCTGGTCAAGTTT
TAGAATTACAAATTAATGATGACCATTTAACAAAGGAACTTAACACCCTC
TTGGAAGAAAAGGATTTCGTCAACCGGCAATTTTACATCGCGGAGTATCA
GCGTAAGAAATTGAACTTACAGTATAACCGAATAGAATTTGCTCACTGAA
TTTTGATGCAATTTTTTACAgagttttttaaaatattttcatacataaaa
catattttttaaatgtttttctcaAAAGGTTTGGACCCGATTATTAGACT
GAATATGAAAAATTATACAGAGGGCTTATTTGAATCTAAGTGTTTAAACT
AAG
Run BLAST on NCBI

protein sequence of TCONS_00051804-protein

>TCONS_00051804-protein ID=TCONS_00051804-protein|Name=TCONS_00051804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MGKPRRNDAQLDKRALRKKAEHQGRTIEEEAVEEKESLHEIPQRYNDSPE
PKRGRKKNKRPKDARPEEVCCTITTIPFIDESAQKLDQATGYTPEENKPK
KETNSKRKLCDEIKVIEPLTAKIEIVEIVRPEPIVHDIPLIQPCTAKKMN
NFMRKQNYKRPDEKVEDVFDVDAEMQRISELLGDEESLPSLMELQEYQKK
ESDRVTKKKSVTRTNFKNHFENAHQAGKFAMKIELFQEAIEQVEKTFGLD
SYKPIGDIPRNDADKITRRLLNIRQDFLNEVVDLRLKTNKCNEVYIRLLD
QYKTHQSVADAFHERAKEKSNIGKNVLKNQIKLLDEAYSHLSTKGLSSFS
KRPSTALKDWQKMIFSFASKTQNYEETIQRLTEKYSNGAEQKRNASEETG
RVC
Run BLAST on NCBI

transcript from alignment at scaffold_205:193006..195647+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051804 ID=TCONS_00051804|Name=TCONS_00051804|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at scaffold_205:193006..195647+ (Clytia hemisphaerica)
CGTCGATAGAAAGAAACGTTATTTTAATTTTGTTCTTGCGGTGATAGGAT GCAGTGAACTTTGCTGTTTTATGCAGTTATTGTTTCAGGCTTGAATCATG GGTAAACCGAGAAGAAACGATGCACAATTAGACAAGAGAGCACTTCGGAA GAAAGCTGAACATCAAGGAAGAACAATTGAAGTAAGATTTTAATTCTTGG GCCAGCACATAGGTTACAATGAGATAAGTTAAAGTTAAACTAGCCCACTA GCCCAGCCCTGTCTCGATACGTCCTTTGGATATTTTCACAATGGTATCAT AAAGAGTAATGAAATTCTGACAAGTGCTGGCTTCTAAACTCAAAAAGAGT TTTGGATTCTAAATTGTACTTATTGAACTTAATCTAGTTTGTCAAAAAGC TCTGGACTACCGTCAGTTGGCTTTACCATTCCCCTTTTAAAGAACACAAC ACAGACTACCTCCTCGAAAAGCGTCGTCCGCGTTATAACTGTGAAAAATG TACTACCTACTTCACCTACACAATAACTTCACTTCCTTACAGCCTCTTCC TGAAAGAAAACGATAGTAATAATATGTCGGAGATTTTTTCCCATTTGCAT CTTAGGGAAGTGAAGTTATTGTGTAGGTGAAGTAGGTAGTACATTTTTCA CAGGTATAACGCGGACGACGTTTTTCGAGGAGGTAGTCTGTGTTGTGTTC TTTAAAAGGGGAATGGTAAAGCCAACTGACGGTAGTCCAGAGCTTTTTGA CAAACTAGATTAAGTTCAATAAGTACAATTTAGAATCCAAAACTCTTTTT GAGTTTAGAAGCCAGCACTTGTCAGAATTTCATTACTCTTTATGATACCA TTGTATGTATTGTCTTTCAGGAAGAGGCTGTGGAGGAAAAAGAGTCACTT CATGAGATTCCTCAACGATACAACGATAGTCCAGAGCCTAAACGAGgacg aaagaaaaacaaaagaccGAAGGACGCTCGACCTGAAGAAGTTTGCTGTA CCATCACTACTATTCCTTTCATAGACGAATCCGCCCAGAAACTGGATCAA GCTACAGGTTATACACCAGAGGAAAATAAACCTAAGAAAGAGACAAATTC AAAGCGTAAACTTTgtgatgaaatcaaagttataGAACCGCTAACAGCTA AAATCGAGATTGTAGAAATTGTTCGACCAGAACCTATCGTTCATGACATT CCATTGATCCAACCGTGTACTGCAAAGAAAATGAATAACTTCATGCGTAA ACAGAACTATAAGCGCCCGGATGAGAAAGTCGAGGATGTATTTGACGTGG ATGCCGAAATGCAACGTATTTCAGAGTTGTTGGGAGATGAGGAATCTCTT CCCAGTTTGATGGAATTACaagaatatcaaaagaaagaatcGGATCGTGT TACCAAGAAGAAATCTGTAACCAGAACCAACTTCAAGaatcattttgaaa atgctCATCAAGCAGGAAAATTTGCGATGAAGATCGAATTGTTTCAAGAA GCTATTGAACAGGttgagaaaacttttggtttagaTTCTTACAAACCCAT CGGTGATATCCCGAGAAATGACGCAGATAAAATCACGAGAAGACTGCTAA ATATAAGACAAGACTTTTTGAACGAAGTTGTCGATTTGCGTTTGAAGACG AATAAGTGTAATGAAGTTTACATCAGGCTGTTGGATCAGTACAAAACTCA CCAGAGCGTCGCCGATGCCTTTCATGAACGAGCAAAGGAGAAGTCAAATA TCGGTAAAAACGTCTTgaagaatcaaatcaaattacTGGATGAAGCTTAT TCGCATCTCTCTACCAAAGGTTTGAGTTCGTTTTCCAAAAGACCATCAAC AGCACTCAAAGACTGGCAAAAGATGATCTTCTCATTCGCAAGCAAGACGC AGAATTATGAAGAAACCATTCAGCGCTTGACTGAAAAATATTCGAACGGA GCAGAGCAGAAAAGAAACGCATCAGAAGAAACTGGAAGGGTTTGTTGAGG CGTATAAAAAGGGCCTCAAAAAGCGAGCAGGAAGCCAACAAAATTACGAA GATCGTGTGCTTAAGAGTTGTGAGTACAAAGAGGTCTGTCGAACACGGGG AAACATCAAACAGAAGATTCAAAAGCAAAGAGAAATGTTCAAACAAGATA AAGTCGATCTTGAAAAAACACTCGATGAAGTCCAAGATGTCGGCACCAAA CCACCGAATTATGATCATCTAACGGCCAAATGGCGTCAGATCCGGGAAGA GTTAGCAACTGACATCAAACGTACTGCAGAGCTGAGAAAAAGTATCAACT CGATTCAAGAAAGTGTTCGATCGAAAGCTGGTCAAGTTTTAGAATTACAA ATTAATGATGACCATTTAACAAAGGAACTTAACACCCTCTTGGAAGAAAA GGATTTCGTCAACCGGCAATTTTACATCGCGGAGTATCAGCGTAAGAAAT TGAACTTACAGTATAACCGAATAGAATTTGCTCACTGAATTTTGATGCAA TTTTTTACAgagttttttaaaatattttcatacataaaacatatttttta aatgtttttctcaAAAGGTTTGGACCCGATTATTAGACTGAATATGAAAA ATTATACAGAGGGCTTATTTGAATCTAAGTGTTTAAACTAAG

Coding sequence (CDS) from alignment at scaffold_205:193006..195647+

>TCONS_00051804 ID=TCONS_00051804|Name=TCONS_00051804|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_205:193006..195647+ (Clytia hemisphaerica)
ATGGGTAAACCGAGAAGAAACGATGCACAATTAGACAAGAGAGCACTTCG
GAAGAAAGCTGAACATCAAGGAAGAACAATTGAAGAAGAGGCTGTGGAGG
AAAAAGAGTCACTTCATGAGATTCCTCAACGATACAACGATAGTCCAGAG
CCTAAACGAGgacgaaagaaaaacaaaagaccGAAGGACGCTCGACCTGA
AGAAGTTTGCTGTACCATCACTACTATTCCTTTCATAGACGAATCCGCCC
AGAAACTGGATCAAGCTACAGGTTATACACCAGAGGAAAATAAACCTAAG
AAAGAGACAAATTCAAAGCGTAAACTTTgtgatgaaatcaaagttataGA
ACCGCTAACAGCTAAAATCGAGATTGTAGAAATTGTTCGACCAGAACCTA
TCGTTCATGACATTCCATTGATCCAACCGTGTACTGCAAAGAAAATGAAT
AACTTCATGCGTAAACAGAACTATAAGCGCCCGGATGAGAAAGTCGAGGA
TGTATTTGACGTGGATGCCGAAATGCAACGTATTTCAGAGTTGTTGGGAG
ATGAGGAATCTCTTCCCAGTTTGATGGAATTACaagaatatcaaaagaaa
gaatcGGATCGTGTTACCAAGAAGAAATCTGTAACCAGAACCAACTTCAA
GaatcattttgaaaatgctCATCAAGCAGGAAAATTTGCGATGAAGATCG
AATTGTTTCAAGAAGCTATTGAACAGGttgagaaaacttttggtttagaT
TCTTACAAACCCATCGGTGATATCCCGAGAAATGACGCAGATAAAATCAC
GAGAAGACTGCTAAATATAAGACAAGACTTTTTGAACGAAGTTGTCGATT
TGCGTTTGAAGACGAATAAGTGTAATGAAGTTTACATCAGGCTGTTGGAT
CAGTACAAAACTCACCAGAGCGTCGCCGATGCCTTTCATGAACGAGCAAA
GGAGAAGTCAAATATCGGTAAAAACGTCTTgaagaatcaaatcaaattac
TGGATGAAGCTTATTCGCATCTCTCTACCAAAGGTTTGAGTTCGTTTTCC
AAAAGACCATCAACAGCACTCAAAGACTGGCAAAAGATGATCTTCTCATT
CGCAAGCAAGACGCAGAATTATGAAGAAACCATTCAGCGCTTGACTGAAA
AATATTCGAACGGAGCAGAGCAGAAAAGAAACGCATCAGAAGAAACTGGA
AGGGTTTGTTGAATGGGTAAACCGAGAAGAAACGATGCACAATTAGACAA
GAGAGCACTTCGGAAGAAAGCTGAACATCAAGGAAGAACAATTGAAGAAG
AGGCTGTGGAGGAAAAAGAGTCACTTCATGAGATTCCTCAACGATACAAC
GATAGTCCAGAGCCTAAACGAGgacgaaagaaaaacaaaagaccGAAGGA
CGCTCGACCTGAAGAAGTTTGCTGTACCATCACTACTATTCCTTTCATAG
ACGAATCCGCCCAGAAACTGGATCAAGCTACAGGTTATACACCAGAGGAA
AATAAACCTAAGAAAGAGACAAATTCAAAGCGTAAACTTTgtgatgaaat
caaagttataGAACCGCTAACAGCTAAAATCGAGATTGTAGAAATTGTTC
GACCAGAACCTATCGTTCATGACATTCCATTGATCCAACCGTGTACTGCA
AAGAAAATGAATAACTTCATGCGTAAACAGAACTATAAGCGCCCGGATGA
GAAAGTCGAGGATGTATTTGACGTGGATGCCGAAATGCAACGTATTTCAG
AGTTGTTGGGAGATGAGGAATCTCTTCCCAGTTTGATGGAATTACaagaa
tatcaaaagaaagaatcGGATCGTGTTACCAAGAAGAAATCTGTAACCAG
AACCAACTTCAAGaatcattttgaaaatgctCATCAAGCAGGAAAATTTG
CGATGAAGATCGAATTGTTTCAAGAAGCTATTGAACAGGttgagaaaact
tttggtttagaTTCTTACAAACCCATCGGTGATATCCCGAGAAATGACGC
AGATAAAATCACGAGAAGACTGCTAAATATAAGACAAGACTTTTTGAACG
AAGTTGTCGATTTGCGTTTGAAGACGAATAAGTGTAATGAAGTTTACATC
AGGCTGTTGGATCAGTACAAAACTCACCAGAGCGTCGCCGATGCCTTTCA
TGAACGAGCAAAGGAGAAGTCAAATATCGGTAAAAACGTCTTgaagaatc
aaatcaaattacTGGATGAAGCTTATTCGCATCTCTCTACCAAAGGTTTG
AGTTCGTTTTCCAAAAGACCATCAACAGCACTCAAAGACTGGCAAAAGAT
GATCTTCTCATTCGCAAGCAAGACGCAGAATTATGAAGAAACCATTCAGC
GCTTGACTGAAAAATATTCGAACGGAGCAGAGCAGAAAAGAAACGCATCA
GAAGAAACTGGAAGGGTTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032801XLOC_032801Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051804-proteinTCONS_00051804-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051804-exon-scaffold_205-1491911889:193006..193186TCONS_00051804-exon-scaffold_205-1491911889:193006..193186Clytia hemisphaericaexon
TCONS_00051804-exon-scaffold_205-1510915933:193006..193186TCONS_00051804-exon-scaffold_205-1510915933:193006..193186Clytia hemisphaericaexon
TCONS_00051804-exon-scaffold_205-1575043694:193006..193186TCONS_00051804-exon-scaffold_205-1575043694:193006..193186Clytia hemisphaericaexon
TCONS_00051804-exon-scaffold_205-1491911889:193876..195647TCONS_00051804-exon-scaffold_205-1491911889:193876..195647Clytia hemisphaericaexon
TCONS_00051804-exon-scaffold_205-1510915933:193876..195647TCONS_00051804-exon-scaffold_205-1510915933:193876..195647Clytia hemisphaericaexon
TCONS_00051804-exon-scaffold_205-1575043694:193876..195647TCONS_00051804-exon-scaffold_205-1575043694:193876..195647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:193006..195647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.0676029 0.219467 0.281816 0.0784614 0.0979395 0.291421 0.106168 0 0.14903 0.0541173 0.042151 0.0231026 0.0123963 0 0.0156525 0.0432496 0.0905151 0 0.0287808 0.0233246 0.0424109 156.491 63.4876 0 0 0.0225789 0.0460086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top