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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051791 ID=TCONS_00051791|Name=TCONS_00051791|organism=Clytia hemisphaerica|type=transcript|length=888bp
ttgaccatcaaagccttatgttcttatatggtttgttctttATGATAACA
AAACGTGcaacattttaaagatttttaactaAAATTTTGGTTACAGCACC
GAGCAGGTTACAGCGTTttaattacaataaaaataatGACTTATTGGAGA
TCATCAAAGCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTGTGACTTT
ATTATACTACAAGGAGGATCTGCCCAAGCGAAACAAAGCCACAACAGAGG
GTCAACCAGATGAATTCCAACAAGATGAATTCCAACCAATTGAAGTTTAC
AAGCAAACATGGAAAGGAGATTGTCCATATCCAAAATATGTTGAAATGGA
GAAACTAGAGAGACAGAAATGGTTTCCACGATATTTGCACCATCTACAGA
AAgtcaatttgaagaaaatttataaatattatTGGAACGATAAGTGTGTC
AGATGGTGGCACCCGAACCCGAAAAATACCTGGTCCTTTTATCCACATCG
TAAAAAAACGTGGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTC
CGAATTGTACTTTCGGACGAGAGCTGAAACCACcgacaaaatgttcaaaa
atgcgCCAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTT
CCCTAGAAGTGGAACAGAGTTGGGTATTTTAAGAGGAAGTTCTTATTTAA
CTTCAGATGGCGATATAGACATACATGTAGACGTCCCTCAGGACATATTA
TTCAAAAGATTGCGCAAGGTTTTAAAAGGCATTGCAATGGATCCGGGTGG
CAGACCTTCGGCCGAAGTAAGTTGGATACAAAGAGGATGTCCACATAATA
AAATGGTTTTTAACGATAACATGGTTGATGAAATGATG Run BLAST on NCBI protein sequence of TCONS_00051791-protein >TCONS_00051791-protein ID=TCONS_00051791-protein|Name=TCONS_00051791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MTYWRSSKPLKVLTVILMVVTLLYYKEDLPKRNKATTEGQPDEFQQDEFQ
PIEVYKQTWKGDCPYPKYVEMEKLERQKWFPRYLHHLQKVNLKKIYKYYW
NDKCVRWWHPNPKNTWSFYPHRKKTWKPAVRPGPSFIRPNCTFGRELKPP
TKCSKMRQRLWDELDKMGAVYFPRSGTELGILRGSSYLTSDGDIDIHVDV
PQDILFKRLRKVLKGIAMDPGGRPSAEVSWIQRGCPHNKMVFNDNMVDEM
M Run BLAST on NCBI transcript from alignment at scaffold_205:20381..22263+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051791 ID=TCONS_00051791|Name=TCONS_00051791|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at scaffold_205:20381..22263+ (Clytia hemisphaerica)
ttgaccatcaaagccttatgttcttatatggtttgttctttATGATAACA
AAACGTGcaacattttaaagatttttaactaAAATTTTGGTTACAGCACC
GAGCAGGTTACAGCGTTttaattacaataaaaataatGACTTATTGGAGA
TCATCAAAGCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTGTGACTTT
ATTATACTACAAGGAGGATCTGCCCAAGCGAAACAAAGCCACAACAGAGT
gagtaactttttttctaacctgataacagatggttggaatttttttacgC
GCACGGTATActtctgaaggcgcttgaaaattaactATTTGAGAACAATT
GTCAAATCTATAACAAGAATTTTGTTTCACGCCGAgatgtcaaaaattga
attttctctAATAGGGCGCTTTATATTCCAACACAATCTAGCGGTGACTT
ATTGTATTCTTTCCCAGTCTTTTTTTAGTGTTGCACGATCCTTACGAAAT
CGATGTTATGCATTAGTTTGATTAGTTTTTCGACGGGCTTGACTGActct
aaaatctcaaaaatcaaaatcaaaataaaattgatttcataTTGCTCTGG
TCTTTAGGGCAGAATTGAAGTAGTCTAGACTGTACCCCGATTCTTAATAC
TTTGACCTATTgttcttgaattgttcttataaagaatacTGTATGCGGCA
CTATTTTCATTGATGTTGCAAAACTTTTAGATACATTATATCATAAGCAA
AGTTATTTTGGCCCACCTAAAATTTAAGcactttatttttaataaatttt
aaatgtaGAGTTTATGGGACACATTTTTTCATTAACTTTGCTAAATTTTA
ACACCAGCATacattttaagctgtttttgccCATCAAAATGTTAGTTTAA
AAAAGAATCTCTCGAAGTGTCATGTTTTTGACATAacgttttcatatttt
tataagGGGTCAACCAGATGAATTCCAACAAGATGAATTCCAACCAATTG
AAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATATCCAAAATATGTT
GAAATGGAGAAACTAGAGAGACAGAAATGGTTTCCACGATATTTGCACCA
TCTACAGAAAgtcaatttgaagaaaatttataaatattatTGGAACGATA
AGTGTGTCAGGTAGAAAGTAATGCAGAGTCTCTTAACTCGAATGTCCCCT
TAAGATAAATAAGTTTTTTCCTATCTACATTTAAcgatgccttataaacc
ttactccacaactcaaaatttcctcaactcaaaacaaatttgtgttcccc
gtgcatGTTATGGAGTTATTCAGACTTAAATTTCTAGTCTATGCAATCTA
AATTTTTCAGGAATGCCTTCGTTCTATTGGTATGGTAAATTTTATAAGTT
TCAAAAAGGTGTCTGACAATAATTCATTTCCATTTTTAACATCATAGATG
GTGGCACCCGAACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAA
AAACGTGGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTCCGAAT
TGTACTTTCGGACGAGAGCTGAAACCACcgacaaaatgttcaaaaatgcg
CCAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCTA
GAAGTGGAACAGAGTTGGGTATTTTAAGAGGAAGTTCTTATTTAACTTCA
GATGGCGATATAGACATACATGTAGACGTCCCTCAGGACATATTATTCAA
AAGATTGCGCAAGGTTTTAAAAGGCATTGCAATGGATCCGGGTGGCAGAC
CTTCGGCCGAAGTAAGTTGGATACAAAGAGGATGTCCACATAATAAAATG
GTTTTTAACGATAACATGGTTGATGAAATGATG Coding sequence (CDS) from alignment at scaffold_205:20381..22263+ >TCONS_00051791 ID=TCONS_00051791|Name=TCONS_00051791|organism=Clytia hemisphaerica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_205:20381..22263+ (Clytia hemisphaerica)
atGACTTATTGGAGATCATCAAAGCCTTTAAAGGTTCTCACTGTAATCTT
GATGGTTGTGACTTTATTATACTACAAGGAGGATCTGCCCAAGCGAAACA
AAGCCACAACAGAGGGTCAACCAGATGAATTCCAACAAGATGAATTCCAA
CCAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATATCCAAA
ATATGTTGAAATGGAGAAACTAGAGAGACAGAAATGGTTTCCACGATATT
TGCACCATCTACAGAAAgtcaatttgaagaaaatttataaatattatTGG
AACGATAAGTGTGTCAGATGGTGGCACCCGAACCCGAAAAATACCTGGTC
CTTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTCCGACCAGGCC
CAAGTTTTATCCGTCCGAATTGTACTTTCGGACGAGAGCTGAAACCACcg
acaaaatgttcaaaaatgcgCCAACGATTATGGGACGAGTTGGATAAAAT
GGGAGCTGTTTATTTCCCTAGAAGTGGAACAGAGTTGGGTATTTTAAGAG
GAAGTTCTTATTTAACTTCAGATGGCGATATAGACATACATGTAGACGTC
CCTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGCATTGC
AATGGATCCGGGTGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGAG
GATGTCCACATAATAAAATGGTTTTTAACGATAACATGGTTGATGAAATG
ATGatGACTTATTGGAGATCATCAAAGCCTTTAAAGGTTCTCACTGTAAT
CTTGATGGTTGTGACTTTATTATACTACAAGGAGGATCTGCCCAAGCGAA
ACAAAGCCACAACAGAGGGTCAACCAGATGAATTCCAACAAGATGAATTC
CAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATATCC
AAAATATGTTGAAATGGAGAAACTAGAGAGACAGAAATGGTTTCCACGAT
ATTTGCACCATCTACAGAAAgtcaatttgaagaaaatttataaatattat
TGGAACGATAAGTGTGTCAGATGGTGGCACCCGAACCCGAAAAATACCTG
GTCCTTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTCCGACCAG
GCCCAAGTTTTATCCGTCCGAATTGTACTTTCGGACGAGAGCTGAAACCA
CcgacaaaatgttcaaaaatgcgCCAACGATTATGGGACGAGTTGGATAA
AATGGGAGCTGTTTATTTCCCTAGAAGTGGAACAGAGTTGGGTATTTTAA
GAGGAAGTTCTTATTTAACTTCAGATGGCGATATAGACATACATGTAGAC
GTCCCTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGCAT
TGCAATGGATCCGGGTGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAA
GAGGATGTCCACATAATAAAATGGTTTTTAACGATAACATGGTTGATGAA
ATGATGatGACTTATTGGAGATCATCAAAGCCTTTAAAGGTTCTCACTGT
AATCTTGATGGTTGTGACTTTATTATACTACAAGGAGGATCTGCCCAAGC
GAAACAAAGCCACAACAGAGGGTCAACCAGATGAATTCCAACAAGATGAA
TTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATA
TCCAAAATATGTTGAAATGGAGAAACTAGAGAGACAGAAATGGTTTCCAC
GATATTTGCACCATCTACAGAAAgtcaatttgaagaaaatttataaatat
tatTGGAACGATAAGTGTGTCAGATGGTGGCACCCGAACCCGAAAAATAC
CTGGTCCTTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTCCGAC
CAGGCCCAAGTTTTATCCGTCCGAATTGTACTTTCGGACGAGAGCTGAAA
CCACcgacaaaatgttcaaaaatgcgCCAACGATTATGGGACGAGTTGGA
TAAAATGGGAGCTGTTTATTTCCCTAGAAGTGGAACAGAGTTGGGTATTT
TAAGAGGAAGTTCTTATTTAACTTCAGATGGCGATATAGACATACATGTA
GACGTCCCTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGG
CATTGCAATGGATCCGGGTGGCAGACCTTCGGCCGAAGTAAGTTGGATAC
AAAGAGGATGTCCACATAATAAAATGGTTTTTAACGATAACATGGTTGAT
GAAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051791-exon-scaffold_205-1491911889:20381..20628 | TCONS_00051791-exon-scaffold_205-1491911889:20381..20628 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1510915933:20381..20628 | TCONS_00051791-exon-scaffold_205-1510915933:20381..20628 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1575043694:20381..20628 | TCONS_00051791-exon-scaffold_205-1575043694:20381..20628 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1491911889:21337..21540 | TCONS_00051791-exon-scaffold_205-1491911889:21337..21540 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1510915933:21337..21540 | TCONS_00051791-exon-scaffold_205-1510915933:21337..21540 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1575043694:21337..21540 | TCONS_00051791-exon-scaffold_205-1575043694:21337..21540 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1491911889:21828..22263 | TCONS_00051791-exon-scaffold_205-1491911889:21828..22263 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1510915933:21828..22263 | TCONS_00051791-exon-scaffold_205-1510915933:21828..22263 | Clytia hemisphaerica | exon |
| TCONS_00051791-exon-scaffold_205-1575043694:21828..22263 | TCONS_00051791-exon-scaffold_205-1575043694:21828..22263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:20381..22263 + |
Blast
The following BLAST results are available for this feature:
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