TCONS_00051787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051787
Unique NameTCONS_00051787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051787 ID=TCONS_00051787|Name=TCONS_00051787|organism=Clytia hemisphaerica|type=transcript|length=471bp
ATGTAGGGGAAACCAGAGGAAAAGGGATAAGACATACGTGGTCTGAATAG
TTATTGCTCTGTTCTTGCCCTCTGAACGCGTTCTNGTTCACGACCAAAGT
TTTCACAATGGGTGACTAGTGTCTGTAGGTGTTTTAGTGATGCGCTCAGC
AATACAATATCATCGGCATATACAATAATACACGTCTGCAGATCACCAGG
TAGTGTGGTACCAATGTTAAGGGCTTTGAAACTCGATATTAGGTCTTCAA
TATAGATATTGTAGAAGTAGGGTGAAAGAATTGCTCCTTGACGGACTCCT
TGAGTTAGCGAAAAGTAGTCTGAGGTTGTTGAACCGTAACGAACTGATGC
TGTACCCTTGAGGTAAAGTTGGATGAGAAATGATACAATTTGACTTGGAA
TATCTTTCTGACAGAGTTTATTGAATAAAGTGAGCCAATTACAAGAGTCG
AAGGCTTTTTCCCCGTCGAGN
Run BLAST on NCBI

protein sequence of TCONS_00051787-protein

>TCONS_00051787-protein ID=TCONS_00051787-protein|Name=TCONS_00051787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
LDGEKAFDSCNWLTLFNKLCQKDIPSQIVSFLIQLYLKGTASVRYGSTTS
DYFSLTQGVRQGAILSPYFYNIYIEDLISSFKALNIGTTLPGDLQTCIIV
YADDIVLLSASLKHLQTLVTHCENFGREXERVQRARTEQ
Run BLAST on NCBI

transcript from alignment at scaffold_204:212429..212899

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051787 ID=TCONS_00051787|Name=TCONS_00051787|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at scaffold_204:212429..212899 (Clytia hemisphaerica)
NCTCGACGGGGAAAAAGCCTTCGACTCTTGTAATTGGCTCACTTTATTCA
ATAAACTCTGTCAGAAAGATATTCCAAGTCAAATTGTATCATTTCTCATC
CAACTTTACCTCAAGGGTACAGCATCAGTTCGTTACGGTTCAACAACCTC
AGACTACTTTTCGCTAACTCAAGGAGTCCGTCAAGGAGCAATTCTTTCAC
CCTACTTCTACAATATCTATATTGAAGACCTAATATCGAGTTTCAAAGCC
CTTAACATTGGTACCACACTACCTGGTGATCTGCAGACGTGTATTATTGT
ATATGCCGATGATATTGTATTGCTGAGCGCATCACTAAAACACCTACAGA
CACTAGTCACCCATTGTGAAAACTTTGGTCGTGAACNAGAACGCGTTCAG
AGGGCAAGAACAGAGCAATAACTATTCAGACCACGTATGTCTTATCCCTT
TTCCTCTGGTTTCCCCTACAT

Coding sequence (CDS) from alignment at scaffold_204:212429..212899

>TCONS_00051787 ID=TCONS_00051787|Name=TCONS_00051787|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_204:212429..212899 (Clytia hemisphaerica)
CTCGACGGGGAAAAAGCCTTCGACTCTTGTAATTGGCTCACTTTATTCAA
TAAACTCTGTCAGAAAGATATTCCAAGTCAAATTGTATCATTTCTCATCC
AACTTTACCTCAAGGGTACAGCATCAGTTCGTTACGGTTCAACAACCTCA
GACTACTTTTCGCTAACTCAAGGAGTCCGTCAAGGAGCAATTCTTTCACC
CTACTTCTACAATATCTATATTGAAGACCTAATATCGAGTTTCAAAGCCC
TTAACATTGGTACCACACTACCTGGTGATCTGCAGACGTGTATTATTGTA
TATGCCGATGATATTGTATTGCTGAGCGCATCACTAAAACACCTACAGAC
ACTAGTCACCCATTGTGAAAACTTTGGTCGTGAACNAGAACGCGTTCAGA
GGGCAAGAACAGAGCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032795XLOC_032795Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051787-proteinTCONS_00051787-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051787-exon-scaffold_204-1491911889:212429..212899TCONS_00051787-exon-scaffold_204-1491911889:212429..212899Clytia hemisphaericaexon
TCONS_00051787-exon-scaffold_204-1510915933:212429..212899TCONS_00051787-exon-scaffold_204-1510915933:212429..212899Clytia hemisphaericaexon
TCONS_00051787-exon-scaffold_204-1575043694:212429..212899TCONS_00051787-exon-scaffold_204-1575043694:212429..212899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:212429..212899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.396142	0	0	0.547829	1.29871	0.348185	1.62983	1.46702	2.46821	1.31897	1.80708	1.70093	2.29644	0.327799	0.601809	0.848285	0.729335	0.719726	0.723639	0.631634	0.598888	1.12898	0.593761	0.145385	1.29753	1.00065	0.271628	0.150296	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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