TCONS_00051783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051783
Unique NameTCONS_00051783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051783 ID=TCONS_00051783|Name=TCONS_00051783|organism=Clytia hemisphaerica|type=transcript|length=429bp
TACAAGCATGTGAAGAAGTCGGATAAACCATCGAATCAGACGGTGAGTTT
GACACATTTGTTAACACTAATTATGCATTTGAGAGTAAATGAACAAAGCT
GATCACAGGATCAGGGCCAGTTTGCCAGCTAAGCAGTATCAACCAGTTAC
AGAGGCTAGTGTATCGTCCAACAAAGCAAAATCAGTTGCTCTtccgaaaa
taaaaattaaaactttatcAGGAGACCCCACAGAATATCAATCCTTTTCT
CAATCGTTCGAAGAGGCTATCCATGAAAATGGTCATTTATCAAACGTCGA
AAAAATGAACTATTTAGTATCTTTGTTGGAAGGAGAAGCGTCTGAATGCA
TTAAAGGCTTGAATCTTACGAATGAAAATTATGAGAATGCTAGAGAACTT
TTAGCTAAAAGATTTGGTGATGAACAAAC
Run BLAST on NCBI

protein sequence of TCONS_00051783-protein

>TCONS_00051783-protein ID=TCONS_00051783-protein|Name=TCONS_00051783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MNKADHRIRASLPAKQYQPVTEASVSSNKAKSVALPKIKIKTLSGDPTEY
QSFSQSFEEAIHENGHLSNVEKMNYLVSLLEGEASECIKGLNLTNENYEN
ARELLAKRFGDEQ
Run BLAST on NCBI

transcript from alignment at scaffold_204:163765..164193

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051783 ID=TCONS_00051783|Name=TCONS_00051783|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_204:163765..164193 (Clytia hemisphaerica)
GTTTGTTCATCACCAAATCTTTTAGCTAAAAGTTCTCTAGCATTCTCATA
ATTTTCATTCGTAAGATTCAAGCCTTTAATGCATTCAGACGCTTCTCCTT
CCAACAAAGATACTAAATAGTTCATTTTTTCGACGTTTGATAAATGACCA
TTTTCATGGATAGCCTCTTCGAACGATTGAGAAAAGGATTGATATTCTGT
GGGGTCTCCTgataaagttttaatttttattttcggaAGAGCAACTGATT
TTGCTTTGTTGGACGATACACTAGCCTCTGTAACTGGTTGATACTGCTTA
GCTGGCAAACTGGCCCTGATCCTGTGATCAGCTTTGTTCATTTACTCTCA
AATGCATAATTAGTGTTAACAAATGTGTCAAACTCACCGTCTGATTCGAT
GGTTTATCCGACTTCTTCACATGCTTGTA

Coding sequence (CDS) from alignment at scaffold_204:163765..164193

>TCONS_00051783 ID=TCONS_00051783|Name=TCONS_00051783|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_204:163765..164193 (Clytia hemisphaerica)
TTGTTCATCACCAAATCTTTTAGCTAAAAGTTCTCTAGCATTCTCATAAT
TTTCATTCGTAAGATTCAAGCCTTTAATGCATTCAGACGCTTCTCCTTCC
AACAAAGATACTAAATAGTTCATTTTTTCGACGTTTGATAAATGACCATT
TTCATGGATAGCCTCTTCGAACGATTGAGAAAAGGATTGATATTCTGTGG
GGTCTCCTgataaagttttaatttttattttcggaAGAGCAACTGATTTT
GCTTTGTTGGACGATACACTAGCCTCTGTAACTGGTTGATACTGCTTAGC
TGGCAAACTGGCCCTGATCCTGTGATCAGCTTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032791XLOC_032791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051783-proteinTCONS_00051783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051783-exon-scaffold_204-1491911889:163765..164193TCONS_00051783-exon-scaffold_204-1491911889:163765..164193Clytia hemisphaericaexon
TCONS_00051783-exon-scaffold_204-1510915933:163765..164193TCONS_00051783-exon-scaffold_204-1510915933:163765..164193Clytia hemisphaericaexon
TCONS_00051783-exon-scaffold_204-1575043694:163765..164193TCONS_00051783-exon-scaffold_204-1575043694:163765..164193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:163765..164193 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.365179	0	0.217471	0.611865	0	1.16459	0.891776	0.569068	0.490141	0.3222	0.366195	0	0.27471	0.196538	0	0	0	0.222799	0.155918	0	0	0.168101	0.692561	1.48857	0	0	0	0.364722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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