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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051775 ID=TCONS_00051775|Name=TCONS_00051775|organism=Clytia hemisphaerica|type=transcript|length=1022bp
CAAAGAAATGCAACTTGATTTCATTGATATCAAATCCAAACTGATGAAAC
AAGCACGTGTTGAGTTCGAATTATGTCCAGTTCAAGGCCACTCATTGCAT
GGAAAAGTAGAACGAAAAATTTGTGAAATCAACAGTTCGATCGAAAAATC
TGTTCACAACCAACGTCTTTCAATCCCTCAGTGGGAAACGTTATCATCAT
CTATTGGCAATCAAATTAACAACTTGCCCTTGGCTGTTGGTAACATTGTG
GGAGACTTCGAATGTCTCGACTTGATAACGCCGAATCGTTTACTAATGGG
ACGAAACAATAATCGTTGCCCCACTGGCATTCTATCATCTACCAACCCAT
CAAATATCATCAAGGAGAACCAATTCATCTTCAATGTCTGGTTTGAAGTT
TGGCTTCTCGTCCATGTGCCAAAACTCATGCACCAGCAAAAATGGTTTAC
ATCAGACAAAATCAACGTTGGCGATATCATCTTGTTCACCAAAAACGAAT
CAGTTCTGTCAAACTCGTACACCTATGGAATCGTCAAGAGGCTCGAATTC
GGTCGTGATGGGGTGGCACGTAAGGCCATCATTCGATATCGTAACGAAAA
TGAAAACGTATTTCGAGAAACAAAGCGAGCTGTTCGATGATTGGTCGTTA
TTCATCACGTGGACGATTATGATATGATGAAAGAGTTGGGTGAAATGGCT
TTATATGTTGATTTGATTCGTAAATGAATTCGTAAATTATGGTAAATGTT
TGCTTTTTTGGTGGGAGTGTAATGTGATTCATCAAATTGTTACtatattt
aaaaaagcaaaaatattttatagttCAATTTTCAGTGTCTTGTTTTTGTC
AGTGTCTTTTTGTCCCCAACGTCCTTTGTTTTCCCAGTGGTTTCTTTTTC
AGCGTCTTTTCTCTCTCGTGCATTCTCGTGTTTCATGCGTCATTTGTTTT
GTTCTATGTTTTAAAGTCATTTATCTATGTTATCAATTATTTCAAACACT
TTGTCAGTTATTATCATTTTNN Run BLAST on NCBI protein sequence of TCONS_00051775-protein >TCONS_00051775-protein ID=TCONS_00051775-protein|Name=TCONS_00051775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
KEMQLDFIDIKSKLMKQARVEFELCPVQGHSLHGKVERKICEINSSIEKS
VHNQRLSIPQWETLSSSIGNQINNLPLAVGNIVGDFECLDLITPNRLLMG
RNNNRCPTGILSSTNPSNIIKENQFIFNVWFEVWLLVHVPKLMHQQKWFT
SDKINVGDIILFTKNESVLSNSYTYGIVKRLEFGRDGVARKAIIRYRNEN
ENVFRETKRAVR Run BLAST on NCBI transcript from alignment at scaffold_204:107180..108201 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051775 ID=TCONS_00051775|Name=TCONS_00051775|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at scaffold_204:107180..108201 (Clytia hemisphaerica)
NNAAAATGATAATAACTGACAAAGTGTTTGAAATAATTGATAACATAGAT
AAATGACTTTAAAACATAGAACAAAACAAATGACGCATGAAACACGAGAA
TGCACGAGAGAGAAAAGACGCTGAAAAAGAAACCACTGGGAAAACAAAGG
ACGTTGGGGACAAAAAGACACTGACAAAAACAAGACACTGAAAATTGaac
tataaaatatttttgcttttttaaatataGTAACAATTTGATGAATCACA
TTACACTCCCACCAAAAAAGCAAACATTTACCATAATTTACGAATTCATT
TACGAATCAAATCAACATATAAAGCCATTTCACCCAACTCTTTCATCATA
TCATAATCGTCCACGTGATGAATAACGACCAATCATCGAACAGCTCGCTT
TGTTTCTCGAAATACGTTTTCATTTTCGTTACGATATCGAATGATGGCCT
TACGTGCCACCCCATCACGACCGAATTCGAGCCTCTTGACGATTCCATAG
GTGTACGAGTTTGACAGAACTGATTCGTTTTTGGTGAACAAGATGATATC
GCCAACGTTGATTTTGTCTGATGTAAACCATTTTTGCTGGTGCATGAGTT
TTGGCACATGGACGAGAAGCCAAACTTCAAACCAGACATTGAAGATGAAT
TGGTTCTCCTTGATGATATTTGATGGGTTGGTAGATGATAGAATGCCAGT
GGGGCAACGATTATTGTTTCGTCCCATTAGTAAACGATTCGGCGTTATCA
AGTCGAGACATTCGAAGTCTCCCACAATGTTACCAACAGCCAAGGGCAAG
TTGTTAATTTGATTGCCAATAGATGATGATAACGTTTCCCACTGAGGGAT
TGAAAGACGTTGGTTGTGAACAGATTTTTCGATCGAACTGTTGATTTCAC
AAATTTTTCGTTCTACTTTTCCATGCAATGAGTGGCCTTGAACTGGACAT
AATTCGAACTCAACACGTGCTTGTTTCATCAGTTTGGATTTGATATCAAT
GAAATCAAGTTGCATTTCTTTG Coding sequence (CDS) from alignment at scaffold_204:107180..108201 >TCONS_00051775 ID=TCONS_00051775|Name=TCONS_00051775|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_204:107180..108201 (Clytia hemisphaerica)
TCATCGAACAGCTCGCTTTGTTTCTCGAAATACGTTTTCATTTTCGTTAC
GATATCGAATGATGGCCTTACGTGCCACCCCATCACGACCGAATTCGAGC
CTCTTGACGATTCCATAGGTGTACGAGTTTGACAGAACTGATTCGTTTTT
GGTGAACAAGATGATATCGCCAACGTTGATTTTGTCTGATGTAAACCATT
TTTGCTGGTGCATGAGTTTTGGCACATGGACGAGAAGCCAAACTTCAAAC
CAGACATTGAAGATGAATTGGTTCTCCTTGATGATATTTGATGGGTTGGT
AGATGATAGAATGCCAGTGGGGCAACGATTATTGTTTCGTCCCATTAGTA
AACGATTCGGCGTTATCAAGTCGAGACATTCGAAGTCTCCCACAATGTTA
CCAACAGCCAAGGGCAAGTTGTTAATTTGATTGCCAATAGATGATGATAA
CGTTTCCCACTGAGGGATTGAAAGACGTTGGTTGTGAACAGATTTTTCGA
TCGAACTGTTGATTTCACAAATTTTTCGTTCTACTTTTCCATGCAATGAG
TGGCCTTGAACTGGACATAATTCGAACTCAACACGTGCTTGTTTCATCAG
TTTGGATTTGATATCAATGAAATCAAGTTGCATTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051775-exon-scaffold_204-1491911889:107180..108201 | TCONS_00051775-exon-scaffold_204-1491911889:107180..108201 | Clytia hemisphaerica | exon |
| TCONS_00051775-exon-scaffold_204-1510915933:107180..108201 | TCONS_00051775-exon-scaffold_204-1510915933:107180..108201 | Clytia hemisphaerica | exon |
| TCONS_00051775-exon-scaffold_204-1575043694:107180..108201 | TCONS_00051775-exon-scaffold_204-1575043694:107180..108201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_204 | supercontig | scaffold_204:107180..108201 . |
Blast
The following BLAST results are available for this feature:
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