TCONS_00051742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051742
Unique NameTCONS_00051742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051742 ID=TCONS_00051742|Name=TCONS_00051742|organism=Clytia hemisphaerica|type=transcript|length=1340bp
TCATTGGCACTTTCaagaaagtaaagaaaaacaataCTCTTCAATATATA
GTTGGCTGATCAGTTTTACTATTGATATTTTTAGCTGCTTTCGCTTATGA
AAAGATGGGGCCGGCAAACACCTATGTCCGGTCGATTGTCGTCCTACCGG
ATATCCGTGATGATATTTATCCTCATTCCGAGGCACTGATCCGTCTATTG
AAAGACACTGGCTGCAATTCCATCAGACAACTTGCATTTGATGCGGACAT
CATTGAGCTACCCggtgaaaaatttttcaaactatcGAGCCAATGTCTCA
CAAAATGTCCGTATAAAACCAGTGATGTCGGCAAAATATCTCCGAGAATC
TTCATAAATGTGCCCGAGCGTGTCAACGTGTCCGGTGGACCGTTTGCGGA
AGCCATCCACAACAGCTTCCCCGAGATCAAAGAAAAAATGAGGTTTATTA
TCAAGTTTTACCAATGTCTCCTGGCGTTCCAGTTGccaccaaaaacaaaa
aagctcACGTTGGTTGGGCACAAAAATTCTGGAAAGACGACATTCGTTAA
CGTGGTTCGTGGCCTTACACACCCTGAATTTATCGCCAcactttcaaaag
aaaaagtttttggtATGTCGATGATTCACGATCAgactcaatttcttttt
atcGACGAAATGAGTCCTGAAATCTTGACGGCTAGTCAGGCCAAGATCCT
TTTGCAAGGCGGTCAAGTGACAGTTTCCTGGAAGAATCAGGACCCATAGA
TTGTTGATAATCGGGCTGGTATTTTCATCACATGTAACAACCGTCCGAAA
TACGGCGACGATCAAAAAGACGTGGAAGATAGGATGGAGTACATGCAGAC
AAAGGAAATTCCTGAGGACGAGCGTGACTCGTTTGCAGCCACATGGATCC
GTGAGCATGCGTTTGAATGCCTCCTCTGGATGTGCAATATGATGCGCgaa
aatgatgaatttattgatGAGAAGGAACTGTTCTTTGTGAAAACAGTTGA
CGACTACGTACCAGTAAAGATTAACGTGTGTGTACCAGATGAAGAACTTC
GAAAGCTCGCTGGTATTCgtgataaaaaatcaaccaacaaGACAACGCCG
CCCGTGTCCAACCGAATCGATACAACAGCTTATATAGACGATGGTCAACA
ACCGGGCTTTTCAAAGTGGTCAGATGAGCACAATCCACCCCAGTGTGATT
CAACTGATTCTGAAGAAAGGACAGCTGAGAGACTACGACGACTAAAGGAG
AGAAGACGGGTACGAAAGCGTCACATTGAAACAACTGATGAAGACACAGA
AGAAGAACAACCTCGAAAAAGAAATTCCTACGAACCCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_204:37095..40619+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051742 ID=TCONS_00051742|Name=TCONS_00051742|organism=Clytia hemisphaerica|type=transcript|length=3525bp|location=Sequence derived from alignment at scaffold_204:37095..40619+ (Clytia hemisphaerica)
TCATTGGCACTTTCaagaaagtaaagaaaaacaataCTCTTCAATATATA
GTTGGCTGATCAGTTTTACTATTGATATTTTTAGCTGCTTTCGCTTATGA
AAAGATGGGGCCGGCAAACACCTATGTCCGGTCGATTGTCGTCCTACCGG
ATATCCGTGATGATATTTATCCTCATTCCGAGGCACTGATCCGTCTATTG
AAAGACACTGGCTGCAATGTAAGGAAAAGTTTTATTCCATTTCATATATt
gccttcccagctggcacataacgttgtttcaacgtttaaataacgttcac
aacgttcatataacgttaaatgaacgttgaaacaacgttgtgtgccagct
gggttctAGTCATGGTCAGAATATTGAAAATACCTGATTTCGATATGTGG
AGTATTTAGCAATTCAGAGTTAAGTAATTGGTCAAATTACATATCTTAAC
TCGTGGAAAAACATAAATGGAAACCATAACCAATTTCTTTTTGTCCCTCT
GTTTTAGTCCATCAGACAACTTGCATTTGATGCGGACATCATTGAGCTAC
CCggtgaaaaatttttcaaactatcGAGCCAATGTCTCACAAAATGTCCG
TATAAAACCAGTGATGTCGGCAAAATATCTCCGAGAATCTTCATAAATGT
GCCCGAGCGTGTCAACGTGTCCGGTGGACCGTTTGCGGAAGCCATCCACA
ACAGCTTCCCCGAGATCAAAGAAAAAATGAGGTTTATTATCAAGTTTTAC
CAATGTCTCCTGGCGTTCCAGTTGccaccaaaaacaaaaaagctcACGTT
GGTTGGGCACAAAAATTCTGGAAAGACGACATTCGTTAACGTGGTTCGTG
GCCTTACACACCCTGAATTTATCGCCAcactttcaaaagaaaaagttttt
ggtATGTCGATGATTCACGATCAgactcaatttctttttatcGACGAAAT
GAGTCCTGAAATCTTGACGGCTAGTCAGGCCAAGATCCTTTTGCAAGGCG
GTCAAGTGACAGTTTCCTGGAAGAATCAGGACCCATAGATTGTTGATAAT
CGGGCTGGTGAGTACAGTGATTTTGTTTAGCTTGTTTTCTTATTTGCTTT
TTTTCCAATGGTCGCTTTGAATATAGACTTTTTCGCGTGTGGAATAGACA
CCCTAAGtgactcccgggggggggggtactagggcaagatgggttagtGG
GATGCTCCGCttgtcagggtacctttttaaaCTCCAGGTTGgatcgcaaa
aacaccaaaatagaaaaatcagtccctcgtagggtgcctatttttggaaa
atttggggtaaaagtagaaaatttgagaaaattttggaatgNGGTCGATT
GTCGTCCTACCGGATATCCGTGATGATATTTATCCTCATTCCGAGGCACT
GATCCGTCTATTGAAAGACACTGGCTGCAATGtatggaaaattcttattc
tatTTCATATATTGCCTTCTAGTCATGGTCAGAATACTGAAAATACCTGA
TTTCGATATGTGGAGTATTTAGCAATTCAGAGTTAAGTAATTGGTCAAAT
AACATATCTTAACTCGTGGAAAAACATAAATGGAAACCATAACCAATTTC
TTTTCGTCCCTCTGTTTTAGTCCATCAGGCAACTTGCATTTGATACGGAC
ATCATTGAGCTACCTNcacttttttcgcaaatttcgagtcccacgtaggg
tccaattttcgaacctcagcggagcacccccgtcagtcgacaagggtagt
acccccccagGAAGTGACTACGATCATTCTTTTACGTTAGGTATTTTCAT
CACATGCAACAACCGTCCGAAATACGGTGACGATAAAAAAGACGTGGAAG
ACAGGATGGAGTACATGGAGACAAAGGAAATTCCTGAGGACGAGAGTGAC
TCGTTTGCAGCCACATGGATCCGTGAGCATGCGTTTGAATGCCTCCTCTG
GATGTGCAATATGATGAGCgaaaatgatgaatttattgatGAGAAGGAAC
TGTTTTTTGTGAAACCAGTTGACGACTACGTACCAGTAAAGGTAAAGTTT
TATGTTGTATTTTACGTGAAATTATTTGGTTTAGAGTGATGTATTTCATT
TTTGAGCACTTAATTTACAGAAACAATTAACTTGTGGTAACTTAAACACT
GTCNAATGAGGTTTATTATCAAGTTTTACCAATGTCTCCTGGCGTTCCAG
CTGccaccaaaaacaaaaaagctcACGTTGGTTGGGcacaaaaattttgg
aaaaacgaCATTTGTTAACGTGGTTCGTGGCCTAACACACCCTGAATTTA
TCGCCACACTTATCGATTCACGATCAgactcaatttctttttatcGACGA
AATGAGTCCTGAAATCTTGACAGCTAGTCAGGCCAAGATCCTTTTGCAAG
GCGGTCAAGTGACAGTTTCCTGGAAGAATCAGGACCCATAGATTGTTGAT
AATCGGGCTGGTGAGTACAGTGATTTTGTTTAGCTTGTTTTCTTATTTGC
TTTTTTTCCAATGGTTGCTTTGAATATAGCCTTTTTCGCGTTGTGGAATA
GACACCCTAAGTGACTACGATCATTCTTTTACGTCAGGTATTTTCATCAC
ATGTAACAACCGTCCGAAATACGGCGACGATCAAAAAGACGTGGAAGATA
GGATGGAGTACATGCAGACAAAGGAAATTCCTGAGGACGAGCGTGACTCG
TTTGCAGCCACATGGATCCGTGAGCATGCGTTTGAATGCCTCCTCTGGAT
GTGCAATATGATGCGCgaaaatgatgaatttattgatGAGAAGGAACTGT
TCTTTGTGAAAACAGTTGACGACTACGTACCAGTAAAGGTAAAGTTTTAT
GTTGTATTTTACGTGAAGTTATTTAGTTTAGAGTGATGTATTTCATTTTT
GAGCACTTAATTTACAGAAACAATTAACTTGTGGTAACTTAAACACTgtc
atttttgaatttaaaaccacTACCGTTTCTTCTAGATTAACGTGTGTGTA
CCAGATGAAGAACTTCGAAAGCTCGCTGGTATTCgtgataaaaaatcaac
caacaaGACAACGCCGCCCGTGTCCAACCGAATCGATACAACAGCTTATA
TAGACGATGGTCAACAACCGGGCTTTTCAAAGTGGTCAGATGAGCACAAT
CCACCCCAGTGTGATTCAACTGATTCTGAAGAAAGGACAGGTAAATTCTT
TCACTTACTTGCTAAGTGACACTTGAAATTTAATGTGCATTTACAAATGC
ATCAAAACACCTAATAACAAGTTGACAAAACTGTCATTTGTAAGACTTTT
TTATCCTTTTCGTTTTTAGCTGAGAGACTACGACGACTAAAGGAGAGAAG
ACGGGTACGAAAGCGTCACATTGAAACAACTGATGAAGACACAGAAGAAG
GTAACTCTTTAGACATTGAGACTCTTGGTAATCATTCATCTCTCCAGTAG
ATATTTTTACTTAAATACGTTCAACACTTTGCTTTTTTAGAACAACCTCG
AAAAAGAAATTCCTACGAACCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032761XLOC_032761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051742-exon-scaffold_204-1491911889:37095..37312TCONS_00051742-exon-scaffold_204-1491911889:37095..37312Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1510915933:37095..37312TCONS_00051742-exon-scaffold_204-1510915933:37095..37312Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1575043694:37095..37312TCONS_00051742-exon-scaffold_204-1575043694:37095..37312Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1491911889:37602..38151TCONS_00051742-exon-scaffold_204-1491911889:37602..38151Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1510915933:37602..38151TCONS_00051742-exon-scaffold_204-1510915933:37602..38151Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1575043694:37602..38151TCONS_00051742-exon-scaffold_204-1575043694:37602..38151Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1491911889:39682..39932TCONS_00051742-exon-scaffold_204-1491911889:39682..39932Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1510915933:39682..39932TCONS_00051742-exon-scaffold_204-1510915933:39682..39932Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1575043694:39682..39932TCONS_00051742-exon-scaffold_204-1575043694:39682..39932Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1491911889:40080..40284TCONS_00051742-exon-scaffold_204-1491911889:40080..40284Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1510915933:40080..40284TCONS_00051742-exon-scaffold_204-1510915933:40080..40284Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1575043694:40080..40284TCONS_00051742-exon-scaffold_204-1575043694:40080..40284Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1491911889:40414..40494TCONS_00051742-exon-scaffold_204-1491911889:40414..40494Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1510915933:40414..40494TCONS_00051742-exon-scaffold_204-1510915933:40414..40494Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1575043694:40414..40494TCONS_00051742-exon-scaffold_204-1575043694:40414..40494Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1491911889:40585..40619TCONS_00051742-exon-scaffold_204-1491911889:40585..40619Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1510915933:40585..40619TCONS_00051742-exon-scaffold_204-1510915933:40585..40619Clytia hemisphaericaexon
TCONS_00051742-exon-scaffold_204-1575043694:40585..40619TCONS_00051742-exon-scaffold_204-1575043694:40585..40619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:37095..40619 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.640636	0.136686	0.72802	0	3.08046	1.78252	3.79224	3.46382	0.549012	1.2636	2.2427	2.508	1.13948	0.495895	1.88508	3.05555	2.09466	2.01769	4.95552	3.01315	3.87278	0	0.0237525	2.20717	2.49618	2.93836	1.97682	0.731956	1.33019	0.00743412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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