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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051722 ID=TCONS_00051722|Name=TCONS_00051722|organism=Clytia hemisphaerica|type=transcript|length=11611bp transcript from alignment at scaffold_203:23585..67388- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051722 ID=TCONS_00051722|Name=TCONS_00051722|organism=Clytia hemisphaerica|type=transcript|length=43804bp|location=Sequence derived from alignment at scaffold_203:23585..67388- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051722 vs. Swiss-Prot (Human)
Match: VP13D (Vacuolar protein sorting-associated protein 13D OS=Homo sapiens GN=VPS13D PE=1 SV=2) HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0 Identity = 517/1630 (31.72%), Postives = 801/1630 (49.14%), Query Frame = 2
Query: 6662 ISGFELKTDLVSLIIIDDCGDTDVPLLDIRFNKIMMHHDFVPEWKGSSECQVATNYYNTRVSAWEPFLESWRFNVHWFKFLDEKQEKTVLKVDAPE--RLDMNMTSAFVDICKTTAGLWTTKLMEDQQDVRE-------------------------------------------------KKRAPFLPFVLRNRTGVKLSFNTLMTSPKSNTSSSLLKVNRSRLLP--NETYHHDVEN---------GNELAFSFQHRSKQRHQATHSLTVHQMIVKLPGLNPIKPITVDRVGEFYRIATHQDTQSTTSNQ--------------MSSKEDVYVMMDIKLEG-ARKVITVHSALIVQNKLSLPVELVAELCSKQYSMCILPA---KETFYVPINLLQSKLYVRPIRANWSFQLSNDEISWRNGISVQE-TSFVRSCKT-DSVTTPFYKFTAVIRR-----LALNRISRDYEFVECSHPEHHITLLHSVVLENQLPCDLFYTFKGSAMKSVVMTGDVTPLHVEHHAGNEMSVFFSCENFQRSDPIRVSSEEKNYVQPIRLYDMHDRVLFLRAFIKYRS-GTVLISVSAPFWLVNKTSIPLVFKREEDEKEVAGQFEEHEEARSLTPLLFSFFSTEYMYTCQMRVGKNYRRNEFPNRKSTSMWSRAFNYEKEFEHRSLYVRREGDRMEKAYQVGIITKWGKGVFSRTKIVTFVPLFQIKNLTEYKLKVTQC----STGNESEEDVLPCDPGVLTNFHWSAK-WDRILRLRLHDIGE--WSGGFRIDKETTYHLAVKSNRNEEVTLQVSVAFKNGTYRCVFLNGEDFPPPYRILNFSEVPLFYCQTNENNSEIRNVIRPKECKDYVMDEPLQPHSLTFNVFQECSESYDLSTKIKGGYRKLYYQNAIFIA--FDGNSRESIPSSLRATSSAPQTTQLVLDVV-HDRKIVLAIKAEHKLSQLWRMNADGNLVQFKPEVRRTSSAPSR------RMVLDVEQTKDGKGNVIQKLVLNQYNPDRASTQTWFFESNSLKCCMNGYAVQ---GVDGLRANTLAVLTKYT-----GETFDKHYYAIRRQKLRPGSGVLSVRLYAIGPTQVVEVSD-----SQHDFEKEDMVFIEGAPQLHGLDLSRRKIPSTE----ISISLAAGFGLSLVNLYPEEVVFATFSHIRFMYEFTPRTNQAEIRIGAVQIDNQLFGSQQTVALFXXXXXXXXXXXXXXXXXXXXDRTDLRILLKVEKDPDYGFL--VFKKFHLDVTRLYIRLEDRLLLKLIQAVQSLMEQEVDTPTAEIQNLFDSHHRLDVADDEIQQKIFFEDVKVNQGDLNISLVVIGKIDGELATIKKNLGLYLASFDAAVIVFESYIRNNMFETFPSLQTHIKEYYIQTFKNQITSILGSLDILGNPMGLFQDFSSGMEGLLKKGNVGGLFVNVAHGMSNSAAKMTGVLADGLWSASGKTSKVSRDTTQ-GSQSSTSHVSAXXXXXXXXXXXXXTSMITEPLEGA-SKKGVGGFLSGIGKGIVGTVAKPMAGVLDLASGTAAAVRTSTETSXXXXXXXRLK--RNCYGPGGVLSKYSKNASEGQEVLRCFNQGDDQEMYVAMEVLRKSDRLKALLTNKGLYIVRSG 11170
ISG E+K + V + IDDC D DVPL ++ F+++ +G + ++ +YYN +S WEPF+E W +V W + + LK++A RLD+N+TS +D +T W +D +D+ K+R PF+PF LRN TG L F TL T+P T ++L ++P N T+ D N G E+ F F+ R K RH+ TH L +HQ+ V++ G + P++VD+VG F+R A S+++ SS V V+ + +EG ARKVITV SALIV+N+L P+EL + S +LPA ++F VP++L +L RP F I W N + E +S R C + D+ + F++F I++ + I D P H I LL +VV+ N LPC+L + KG + + G LH + N + + S ENF + + +NY+ +RLYD++ R L L I R+ G++ I +SAP+WL+NKT +PL+F+++ + + AGQFEEHE ARSL+PLLF + E C MR+G+ P W + F+ + R+L V ++G+R Y +GI K G+G + T +V F P + + N + +KL Q G + E + PG FHW +D++L +RL D+ WSGGF ++K ++H+ ++ + L+V + + TYR F + + PPP+RI NFS+VP+ + Q +R ++P DY DEP P +T V S + + R+LYY+N I+IA + + + A++ A +LVLDV ++++L K K SQLWRM G L V + PS +LD+ N + L+L + + R++TQTW F L C ++G VQ G+ GL VL T G + + QK+RPGSG+LS+R+ GPT+ ++++D S +E +++ E +L + K P TE + + L G GLSL+N PEE+VFA+ + I Y ++ E+ I VQ+DNQL G+ Q L+ P + T + + K P L ++K + R +++E++LLLKL+ D +E++ ++ H + +FE++K++ + +S+ K+ +L +K LG L F+ AVI + + R + +ET + I +++ + +Q ILGS+D LGNPMGL D S G+ GL+K GNVGGL NV HG+SNSAAK G L+DGL + R+ + + +S H+ AG+ GL G+ GGLTS+IT +EG ++ GV GF+SG+GKG+VGTV KP+AG LD AS TA AVR + S P R++ R C GP G+L +YS++ +EGQE L E ++A+E + D L+++K +Y ++SG
Sbjct: 2701 ISGVEIKAESVCICFIDDCMDCDVPLAELTFSRLNFLQRVRTSPEGYAHFTLSGDYYNRALSGWEPFIEPWPCSVSWQQQAASRLHPPRLKLEAKAKPRLDINITSVLIDQYVSTKESWMADYCKDDKDIESAKSEDWMGSSVDPPCFGQSLPLVYLRTRSTASLTNLEHQIYARAEVKTPKRRQPFVPFALRNHTGCTLWFATLTTTP---TRAALSHSGSPGVVPEGNGTFLDDTHNVSEWREVLTGEEIPFEFEARGKLRHRHTHDLRIHQLQVRVNGWEQVSPVSVDKVGTFFRYAAPDKNSSSSTIGSPSSRTNIIHPQVYFSSLPPVRVVFAVTMEGSARKVITVRSALIVRNRLETPMELRLDSPSAPDKPVVLPAIMPGDSFAVPLHLTSWRLQARPKGLGVFF--CKAPIHWTNVVKTAEISSSKRECHSMDTEKSRFFRFCVAIKKENYPDYMPSNIFSDSAKQIFRQPGHTIYLLPTVVICNLLPCELDFYVKGMPINGTLKPGKEAALHTADTSQN-IELGVSLENFPLCKELLIPPGTQNYMVRMRLYDVNRRQLNLTIRIVCRAEGSLKIFISAPYWLINKTGLPLIFRQDNAKTDAAGQFEEHELARSLSPLLFCYADKEQPNLCTMRIGRGIHPEGMPG------WCQGFSLDGGSGVRALKVIQQGNRPGLIYNIGIDVKKGRGRYIDTCMVIFAPRYLLDNKSSHKLAFAQREFARGQGTANPEGYISTLPGSSVVFHWPRNDYDQLLCVRLMDVPNCIWSGGFEVNKNNSFHINMRDTLGKCFFLRVEITLRGATYRISFSDTDQLPPPFRIDNFSKVPVVFTQHGVAEPRLRTEVKPMTSLDYAWDEPTLPPFITLTVKGAGSSEINCNMNDFQDNRQLYYENFIYIAATYTFSGLQEGTGRPVASNKAITCAELVLDVSPKTQRVILKKKEPGKRSQLWRMTGTGMLAHEGSSVPHNPNKPSAARSTEGSAILDIAGLAAVTDNRYEPLMLRKPDRRRSTTQTWSFREGKLTCGLHGLVVQAKGGLSGLFDGAEVVLGPDTSMELLGPVPPEQQFI--NQKMRPGSGMLSIRVIPDGPTRALQITDFCHRKSSRSYEVDELPVTEQ-------ELQKLKNPDTEQELEVLVRLEGGIGLSLINKVPEELVFASLTGINVHYTQLATSHMLELSIQDVQVDNQLIGTTQPFMLYVTPLSNENEVI----------ETGPAVQVNAVKFPSKSALTNIYKHLMITAQRFTVQIEEKLLLKLLSFFG------YDQAESEVEKYDENLHEKTAEQGGTPIRYYFENLKISIPQIKLSVFTSNKLPLDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAKFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENI---DSYCVLISSKAVYFLKSG 4290 HSP 2 Score: 353.599 bits (906), Expect = 6.351e-97 Identity = 337/1316 (25.61%), Postives = 587/1316 (44.60%), Query Frame = 2
Query: 2 KNVHLRYE--CKEESHQFAFGLQIENLSAQSA-NENWETQYAGCSTDKKFKSVKLENLSIYND------KDFMDMEVLKNKDSEFYNKNFKYILNPVSGEARICRNASNSPLSMKDGPRFHVEVLFDAVHALLSNGQYRLITDISEEITMFFKKKENKKWRPFTTVHEDSKAWWRFAIKTVLEPIKDKHRRCQKMFIMKHVKFATEYIPKYTKVLTQGAQVEADELKSVEDMEKELQFEAIAAMRKNV---FSKIAGTASNEKINQKN------------------QSSQTW-TSWAMSYIPYNQANNASESDDDNKDLALTSEE----EKFLADLSEAYSNDEESLYKRDAIFTEVSFTLNKCGVKL------QDEYSSKVLLNVSFEALKFCSKVLLKTKYFHWTTSLGSMIIENPEKTDEHFPELVFPQA-KENGNSS---------------------DKPFLEISFGKT-TFPKVVNTLSIKLEASTVVYKPSLFSQIKEFF----VLQERSRYQLNIDNMNSKLRQAVSSRLEELKNATKTELVQVVDNLLKGQTKMLEERWNISLDVTAPRIIIPLNQTSRSGIPVSKDEDILNKTVVINLGRVTFGNQYAKGVLEVTKQANIAXXXXXXXXXXXFVTPSSTPPTQEEMKENLTNLCETLP------TEE------VKEKFYDSYTVELSMVQILVCNNKD-ISSIQLKGFGPDHVVEEFSVSFHLKRRIVFTTDPELPAVILTTVLPQLLIHIDENKLQALFSCVKMITNNQSKSS------LIIKDTESTVSASKS-----RSDTFLDVDTMDLLSESKLFMAKFTFEKLSLGLHSRGRCFAELQLKGIECEVAKRPYNLSVSFILSSLMLIDAIQTYGEEYELLVSSNK------PTQPL--------------------------------------GEEDVLINITYDMISSDAPSLDQTETTPLNILSVNFNTLFIIANLETMVELNNVLSQLLPK-----SSSSRHTKHGERKRHDSTSEDTNERRIELTATFRELDILIFRSI-VKDFVKCPLKVSKVTVSNLELLSTVGSTMDVSGSIGNVTVIDLSSISFLRKNIFTVGEEAGGPSERSE-GDPEKAFT----FKLTK-------KRNVQE--LNIHIASGYYVHNPNFISEMVMCVGDYKQYAVNMAKSLQLAASDMAKSIVAGKPNFLS---SPVKGVDPLFSQTTD----SPSSQQGDTPSQGTFIYIVNINSPVVIFPKDSESMEFLVGHLGRIHIDNLNATNSKTTFGENIKLDIQKINLSMLN 3460
++VHLR+E SH FAFG+ I+N+S Q+A NE + + K + + SIY D D ME+ + +++ Y+L PV A + RN S PL + PR ++ + + LS QYR I + +E+ ++ + ++W+P + ++ + WW FA+ L I+++ +RC F++ + A Y KY L +G + D+ + + +E+E FE + +R+ V F K A + + Q + Q Q+W W Y N E + EE E+F ++A + + KRD +F +++ L + V L + + + + F +K ++ L + + LG + + + FP LVFP KE G S D P E+ + + L++ ++Y P ++ +FF V YQ + ++ +A + +LK TK E+ Q +D LL G +RW + LD++AP++I P + ++ + VV++LGR+ N K + + S+E +DE+ TP +TPP + + +N +T P +EE + K Y+ Y++ +QI+V KD +Q GP HVVE+F+V L+RR+++T+DP+ P +L+ LP L IHI+E+K+ AL +C ++T + K+S I E S S +S L+ T ++L ES+L +A+F + LG+ S GR + L++ G KRPY+ VS + L+L+D +QTYG +++LL++S+K PT L E++ LI + Y +SS+ PS++ T L ++S+ N L II N ET+VEL L + PK S T R T + T E+ E+ L++L+ R++ + + K K++ ++ ++ ++GST D++GS+G + ++DL+ + + + ++G G + S+ G E F LT+ +R+ QE LN+ +AS +Y H+ F+ E+ + + + ++ M KS + + + A +S +P K +P + + +S DT I +NI SPVV P+ S E LVGHLG+I I N A + ++ + ++++I+ I L LN
Sbjct: 153 QDVHLRFEDGVTNPSHPFAFGICIKNVSMQNAVNEPVQKLM-------RKKQLDVAEFSIYWDVDCTLLGDLPQMELQEAMARSMESRSHHYVLEPVFASALLKRNCSKKPLRSRHSPRIDCDIQLETIPLKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWYFALNANLYEIREQRKRCTWDFMLHRARDAVSYTDKYFNKL-KGGLLSTDDKEEMCRIEEEQSFEELKILRELVHDRFHKQEELAESLREPQFDSPGACPGAPEPGGGSGMLQYLQSWFPGWGGWYGQQTPEGNVVEGLSAEQQEQWIPEEILGTEEFFDPTADASCMN--TYTKRDHVFAKLNLQLQRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRLGGLFLRDLATEGTMFPLLVFPNPQKEVGRVSQSFGLQTTSADRSDHYPAADPDGPVFEMLYERNPAHSHFERRLNVSTRPLNIIYNPQAIKKVADFFYKGKVHTSGFGYQ---SELELRVAEAARRQYNKLKMQTKAEIRQTLDRLLVGDFIEESKRWTVRLDISAPQVIFPDDFKFKNPV-----------LVVVDLGRMLLTNTQDNSR---RKSRDGSASEETQFSDDEYKTPLATPPNTPPPESSSSNGEKTPPFSGVEFSEEQLQAHLMSTKMYERYSLSFMDLQIMVGRVKDNWKHVQDIDVGPTHVVEKFNVHLQLERRLIYTSDPKYPGAVLSGNLPDLKIHINEDKISALKNCFALLTTPEMKTSDTQIKEKIFPQEEQRGSLQDSVMNLTQSIVLLEQHTREVLVESQLLLAEFKVNCMQLGVESNGRYISVLKVFGTNAHFVKRPYDAEVSLTVHGLLLVDTMQTYGADFDLLMASHKNLSFDIPTGSLRDSRAQSPVSGPNVAHLTDGATLNDRSATSVSLDKILTKEQESLIKLEYQFVSSECPSMNLDST--LQVISLQVNNLDIILNPETIVELIGFLQKSFPKEKDDLSPQPLMTDFERSFREQGTYQSTYEQNTEVAVEIHRLNLLLLRTVGMANREKYGRKIATASIGGTKVNVSMGSTFDMNGSLGCLQLMDLTQDNVKNQYVVSIGNSVGYENIISDIGYFESVFVRMEDAALTEALSFTFVERSKQECFLNLKMASLHYNHSAKFLKELTLSMDELEENFRGMLKSAATKVTTVLATKTAEYSEMVSLFETPRKTREPFILEENEIYGFDLASSHLDTVK---LILNINIESPVVSIPRKPGSPELLVGHLGQIFIQNFVAGDDESR-SDRLQVEIKDIKLYSLN 1435 HSP 3 Score: 234.958 bits (598), Expect = 4.468e-61 Identity = 155/454 (34.14%), Postives = 237/454 (52.20%), Query Frame = 2
Query: 3839 TEITAEFKMPCLQLELHGEMAGKSCGFVLIEFNDFNCAFSNIDRPFT-TICITLQSFFIEDLLHPEKD-KYRYLLXXXXXXXXXXXXXIMLKNERPSSSYPGERSIFMVNSLSTSLPNMLSEDASSFD--------EEVKGSSIQQMETP------------------------LISIKIVTTSDSHLEEEMMDSTQAKKSITVDMNNLDMVVNLQTWVILLEFFGIGSXXXXXXXXXXXXXXXXXXXXVIEEAQSAIASAPTDVNVNIK--SLVLYLNKELYPLAKASVTTMQLNMSLDDGNQDISGSVGKVVLMDLSPYKGLYGIRLISSGEKALDFSFFRYGRPDPFLNRDHDMDLTLSMSALQYVHTQRFLMETISFAQHFVFLQEVLGRMRAANEGKKVHAIVNRCARLKLKVQAEAPILILPRKTSCADVLVANLGKLSVENQFLYAS 5092
T+I A F + LQ++L G++ + G V ++F DF FS D P T +I I L S +EDLL D KY+ L+ S + +S + + E S S P ++ + + SLP+ + E + F K +Q + P L+ I I H E + +SI VD N LD+++ LQTWV++L+FFGIGS + + P + +++K SL L LNK LAKA+V+ + ++ + +G+ + GS+G + L DL+ + Y R +SGE+AL F F+YGRPDP L R+HD+ ++L M+++QYVHTQRF E ++F QHF LQ+VLGR RAA EG+ V RC+R+ L ++A AP+L++P + +++VANLGKL V+N+FL+A
Sbjct: 1616 TQIQATFCISELQVQLSGDLTLGAQGLVSLKFQDFEVEFSK-DHPQTLSIQIALHSLLMEDLLEKNPDSKYKNLMVSRGAPKPSS----LAQKEYLSQSCPSVSNVEYPD-MPRSLPSHMEEAPNVFQLYQRPTSASRKKQKEVQDKDYPLTPPPSPTVDEPKILVGKSKFDDSLVHINIFLVDKKH-PEFSSSYNRVNRSIDVDFNCLDVLITLQTWVVILDFFGIGSTADNHAMRLPPEGILHNVKLEPHASMESGLQDPVNTKLDLKVHSLSLVLNKTTSELAKANVSKLVAHLEMIEGDLALQGSIGSLSLSDLTCHGEFYRERFTTSGEEALIFQTFKYGRPDPLLRREHDIRVSLRMASVQYVHTQRFQAEVVAFIQHFTQLQDVLGRQRAAIEGQTVRDQAQRCSRVLLDIEAGAPVLLIPESSRSNNLIVANLGKLKVKNKFLFAG 2062 HSP 4 Score: 232.646 bits (592), Expect = 2.555e-60 Identity = 159/458 (34.72%), Postives = 246/458 (53.71%), Query Frame = 2
Query: 5192 LLDCINIRLTDMEVYSALKVETREEKL------------VYVHQ-GEKMMVDPCFLNLMVERNLEWAFGRQVPDMSVTGHLSSVAIDLDLSQFSLIMGMLGENLGEPLDAFQAPLTVIVDPLEMNSTSSQVWTNLHIKLNLSNVTL-ITSPTFSFGPFKGLSTSQGGKLVKFDLINSKFVFESFSDKSKAMNLVSSDVLLHDIR------SPANTG----ILMPCTKNRRTSNYLQFEVHYLDTKDKSRLTFLCNESHILLQFEFLLQVMNFILR----KEENQLSG----KASEQGPVMTKRSSPTVLTKVDXXXXXXXXXXXXXXQFELKVNITESELVVVEDIKIADSRTVILKTTAVFFYRPDHPSERPISCSLQSLEIFSCCLSAPDDSALSIVDPVAFLVELNNQVKRQSNVGLLDAVENK---PMLEVQFQVPVNIRLSYHDVQMFKQIVK 6460
LLDC+ + L DM++++A + K +V Q G ++ +PC L L VERNL+ VPD+S+ G+LSSV LDL ++ LI G+L NLGEP++ F P + DP S +V+T + +++ NV+L + P G G L +FD K ++ESFS+++K++NLVS ++ D R SP T I P + T +Q E+H+ TKD S T + N + L F++LL V +F+ K++N ++ +S + ++ K V+TK +++ P ++ E+KVN+T +E VV+ED+ D+ +ILK T V Y+P +RP S SL +E+FSC L D+ALSIVDPV +EL Q++ GL+DA ++ P+LE+Q Q ++IRLSY+DVQ+F I K
Sbjct: 2152 LLDCVVVDLQDMDIFAAERHPREYSKAPEDSSGDLIFPSYFVRQTGGSLLTEPCRLKLQVERNLDKEISHTVPDISIHGNLSSVHCSLDLYKYKLIRGLLENNLGEPIEEFMRPYD-LQDPRIHTVLSGEVYTCMCFLIDMVNVSLELKDPKRKEG---------AGSLARFDFKKCKLLYESFSNQTKSINLVSHSMMAFDTRYAGQKTSPGMTNVFSCIFQPAKNSSTTQGSIQIELHFRSTKDSSCFTVVLNNLRVFLIFDWLLLVHDFLHTPSDIKKQNHVTPSRHRNSSSESAIVPKTVKSGVVTK------RSSLPVSNERHLEVKVNVTGTEFVVIEDVSCFDTNAIILKGTTVLTYKPRF-VDRPFSGSLFGIEVFSCRLGNEHDTALSIVDPVQIQMELVGNSSYQNSSGLMDAFNSEDFPPVLEIQLQA-LDIRLSYNDVQLFLAIAK 2591 The following BLAST results are available for this feature:
BLAST of TCONS_00051722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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