TCONS_00051714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051714
Unique NameTCONS_00051714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051714 ID=TCONS_00051714|Name=TCONS_00051714|organism=Clytia hemisphaerica|type=transcript|length=444bp
ATAAAacgtttataaaaaatattcaagatttataaaaaattacaaaacaa
ttACAATATAATATAAGAATTCAAGAATTTAAATATAAGAATTTAAGAAG
TTAAATTGTGCAACTGAACAACGAATGTTTGTTTGAttcatgaaattaaa
aaaaccaCCAGAACCACTATTTTTTATTAATAGGTGTTCTCATCTTTTAG
GAGACCACGTGCCATTATTCGAACAAATCAACATTTCTAGACAATACACA
TCGTTCAAGAGGCCGCCTCGTAGGCTGCTTTGGACTGCTTTCCAATACAT
AGACATACCATTCCTTAAAAAAGTCCACCTATTCCCCCATTTTATCCATG
TAGGGTTTCTGTCTCAGTAATACATAGAATTTCGTGAACTTGCCGTAaag
ttttttattactttaaacCATACGgttaattttcttccttttcc
Run BLAST on NCBI

transcript from alignment at scaffold_202:998812..999255

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051714 ID=TCONS_00051714|Name=TCONS_00051714|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at scaffold_202:998812..999255 (Clytia hemisphaerica)
ggaaaaggaagaaaattaacCGTATGgtttaaagtaataaaaaacttTAC
GGCAAGTTCACGAAATTCTATGTATTACTGAGACAGAAACCCTACATGGA
TAAAATGGGGGAATAGGTGGACTTTTTTAAGGAATGGTATGTCTATGTAT
TGGAAAGCAGTCCAAAGCAGCCTACGAGGCGGCCTCTTGAACGATGTGTA
TTGTCTAGAAATGTTGATTTGTTCGAATAATGGCACGTGGTCTCCTAAAA
GATGAGAACACCTATTAATAAAAAATAGTGGTTCTGGtggtttttttaat
ttcatgaaTCAAACAAACATTCGTTGTTCAGTTGCACAATTTAACTTCTT
AAATTCTTATATTTAAATTCTTGAATTCTTATATTATATTGTaattgttt
tgtaattttttataaatcttgaatattttttataaacgtTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032745XLOC_032745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051714-exon-scaffold_202-1491911889:998812..999255TCONS_00051714-exon-scaffold_202-1491911889:998812..999255Clytia hemisphaericaexon
TCONS_00051714-exon-scaffold_202-1510915933:998812..999255TCONS_00051714-exon-scaffold_202-1510915933:998812..999255Clytia hemisphaericaexon
TCONS_00051714-exon-scaffold_202-1575043694:998812..999255TCONS_00051714-exon-scaffold_202-1575043694:998812..999255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:998812..999255 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150969	0.147219	0.170935	0	0	0	0	0	0.381656	0.787905	1.22362	0	2.61053	2.50251	6.85802	8.00368	1.92664	2.90404	5.61692	8.39672	2.48141	2.99027	1.55788	2.2032	0	0	3.51915	3.75573	4.35666	3.07298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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