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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051705 ID=TCONS_00051705|Name=TCONS_00051705|organism=Clytia hemisphaerica|type=transcript|length=2245bp
TTCTatcttttaaaacaaatttctaTTATACTAATCTATTTTATTTCGTT
TAAGcatgaaaaaataacaagatgaaaaatgaaaaaattaaattaatgaa
aataaaatccgGGCATTGAAATCAATACGTACTCCGTGGCTTTGGTGAAT
TAACTGTTTGTGTTTGGTGGCTGGGTAGGTAAGAACAGAATCCCACACAA
CGAGTAAGTCTTTATCAGTTTCTGCCTTTTTCTAGAAAAGTTTTTCTTGC
TTCTAGAGGATGTTGTAAGATATCCTTGGAGTAACTTTCTTGTATGGGGT
AAGCCTCAAAAAGATGAAGACGGGTTGAGAAAAAGAACTTCAAGGGAGGA
AATCTGATTGGCTTTTTGCTACAAGTGAGGGCATCCATACATTggttaat
attttcatttaagaaGGGGTAAAAACTTTCCTGTTAGAAAATCCCATTCT
GTTATAAATAGATACTTATAGGTACTTGACATAACATTTATGTTAGGGTA
CATTTGTCTCTATTTTTCGCTGTTTTTATACTGTTAATGCCAGAAAAAAA
TGTAGTCAATTGCGAAAAAGAGTTTCACGAAAATGAGTTGAAGCGTTACA
GCAATAATAGATGGTTTTGAACCATCCTTCTCATCTATGACAAAGTCTTC
GGTCAATctcaaatattttattgtttattctcacctcagTATCTGTGATT
AGAGAGATAACACTTTCAATTTCTTCAATACTAGGGAGATCATCGATTAT
ATTTCCAGCGAGTATCTTTTGAAGAACTTGAACTGCCTTATTCCCAAGTT
CTGGTGTAACATGACTCAAAACATTGACTCCTTCAATAAAATGATGATTC
ATGTAAGGTCTCCTTTCATGTTTTAGTTTTGGTGTATAGGAGTCTTTCAA
ATACTCCAACAAGCCACGAATTAGAGTCATCGCTTCTTGaagatttgttt
ttgtttttgttttttcatgctTAGCATATAACGATTGATGATGTGTTTGT
TTCTGGTGAAATTGGACTAGATCTTTGAATTTACGGTTTGTTATTGATTC
TGTGGAGGAGTCTGGATGACTTTGGCAAGTCATTTTGTGTccacttttaa
attttgctgactctGTAGTTTCTCGAACCCACGATAAATCATCTTTCACG
CATTTAGTTGGCACTGGCTTTTGTTTGCTTAAAAACTCCTTGTTGTCATT
ATCAAGAAATAAGCTAGACTTCCTATCCTGTAGAGAATCCGATAAACTTA
TAGTCTGTTGAGTTGCACTCGGCATACGGAAATAATTGAATGTTGCATTT
TTAATTGCAAATGATGAAAGCTCTGAATTACCATCTTTAAGGTGTGATAA
ATGTTTATAATAAATTATTTTGGCAATGAAGTAAGCCAATTTTTGTTGTT
TGTCAAAACTTTTCACGATCCTTGATTCTGCATCTGATAATGAAATCCTC
CAACTCAAATCACTTGTTTCCGTTTCCGGCTTGGGAACAATACTACATCC
GTTTTCCTTAATCTTCTCAATTTCGCCTCCTAAATTAAGGGATTCAAAAC
CAGGACCCAAGCCCCATTCTTTTGCACTTGGAGGCCAATAACCGATACAT
CTTATGGTAACAATATTATCACACGAAAAATGGATTCCACCTGTATTGTC
TAAGATTTCCACTACAATTGAAAGACCATCAGCTTTTACATTGGTTTCGA
TTCCTAACCAAGGGAAACGCTGCTCATTCGCTGTCCAATGATCTTCACAG
TCATCAGTATCTCCATGAATAATATCATAAAATTCTTTCTTCACCATAGG
CTTATTAGCCTCCATAAAATCTTTCAAACGCGCAAGTAGATTTTCTCGAA
ACTCTTTCCCGCTACTTCCGAAACCGTAGATGCGCGGTCGGACGTAGCCT
GGACGATTTGTCATTTCACTCAGGCTAATGTCTTTTGGATCGCCTTTTAG
CACTTCATACTCTATGTCCCATTCCATGTTAATCCGATTTTCGCCATTTT
CGGGCTTGCACTTGAACCATCGGGCAATACAAGTTCCATCTCGGGTGCTA
CCGGTTAACCGTTTCGGGAAATCAGGGAGAAAAAGCTGTTTGATTGATCT
GAATAGATCTTGATTTATTGAACACCATTTTTAGATCATAGTTGAGTAGT
TGTTCATACTTGTCTAAATAGAACTTTTCTCCCATATCCAACAAAGTTTC
TatggaaagaaaaattgaatttatttaAAAGTATGAAACTTTCAT Run BLAST on NCBI protein sequence of TCONS_00051705-protein >TCONS_00051705-protein ID=TCONS_00051705-protein|Name=TCONS_00051705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MEWDIEYEVLKGDPKDISLSEMTNRPGYVRPRIYGFGSSGKEFRENLLAR
LKDFMEANKPMVKKEFYDIIHGDTDDCEDHWTANEQRFPWLGIETNVKAD
GLSIVVEILDNTGGIHFSCDNIVTIRCIGYWPPSAKEWGLGPGFESLNLG
GEIEKIKENGCSIVPKPETETSDLSWRISLSDAESRIVKSFDKQQKLAYF
IAKIIYYKHLSHLKDGNSELSSFAIKNATFNYFRMPSATQQTISLSDSLQ
DRKSSLFLDNDNKEFLSKQKPVPTKCVKDDLSWVRETTESAKFKSGHKMT
CQSHPDSSTESITNRKFKDLVQFHQKQTHHQSLYAKHEKTKTKTNLQEAM
TLIRGLLEYLKDSYTPKLKHERRPYMNHHFIEGVNVLSHVTPELGNKAVQ
VLQKILAGNIIDDLPSIEEIESVISLITDTEVRINNKIFEIDRRLCHR Run BLAST on NCBI transcript from alignment at scaffold_202:676904..679148 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051705 ID=TCONS_00051705|Name=TCONS_00051705|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at scaffold_202:676904..679148 (Clytia hemisphaerica)
ATGAAAGTTTCATACTTTtaaataaattcaatttttctttccatAGAAAC
TTTGTTGGATATGGGAGAAAAGTTCTATTTAGACAAGTATGAACAACTAC
TCAACTATGATCTAAAAATGGTGTTCAATAAATCAAGATCTATTCAGATC
AATCAAACAGCTTTTTCTCCCTGATTTCCCGAAACGGTTAACCGGTAGCA
CCCGAGATGGAACTTGTATTGCCCGATGGTTCAAGTGCAAGCCCGAAAAT
GGCGAAAATCGGATTAACATGGAATGGGACATAGAGTATGAAGTGCTAAA
AGGCGATCCAAAAGACATTAGCCTGAGTGAAATGACAAATCGTCCAGGCT
ACGTCCGACCGCGCATCTACGGTTTCGGAAGTAGCGGGAAAGAGTTTCGA
GAAAATCTACTTGCGCGTTTGAAAGATTTTATGGAGGCTAATAAGCCTAT
GGTGAAGAAAGAATTTTATGATATTATTCATGGAGATACTGATGACTGTG
AAGATCATTGGACAGCGAATGAGCAGCGTTTCCCTTGGTTAGGAATCGAA
ACCAATGTAAAAGCTGATGGTCTTTCAATTGTAGTGGAAATCTTAGACAA
TACAGGTGGAATCCATTTTTCGTGTGATAATATTGTTACCATAAGATGTA
TCGGTTATTGGCCTCCAAGTGCAAAAGAATGGGGCTTGGGTCCTGGTTTT
GAATCCCTTAATTTAGGAGGCGAAATTGAGAAGATTAAGGAAAACGGATG
TAGTATTGTTCCCAAGCCGGAAACGGAAACAAGTGATTTGAGTTGGAGGA
TTTCATTATCAGATGCAGAATCAAGGATCGTGAAAAGTTTTGACAAACAA
CAAAAATTGGCTTACTTCATTGCCAAAATAATTTATTATAAACATTTATC
ACACCTTAAAGATGGTAATTCAGAGCTTTCATCATTTGCAATTAAAAATG
CAACATTCAATTATTTCCGTATGCCGAGTGCAACTCAACAGACTATAAGT
TTATCGGATTCTCTACAGGATAGGAAGTCTAGCTTATTTCTTGATAATGA
CAACAAGGAGTTTTTAAGCAAACAAAAGCCAGTGCCAACTAAATGCGTGA
AAGATGATTTATCGTGGGTTCGAGAAACTACagagtcagcaaaatttaaa
agtggACACAAAATGACTTGCCAAAGTCATCCAGACTCCTCCACAGAATC
AATAACAAACCGTAAATTCAAAGATCTAGTCCAATTTCACCAGAAACAAA
CACATCATCAATCGTTATATGCTAagcatgaaaaaacaaaaacaaaaaca
aatcttCAAGAAGCGATGACTCTAATTCGTGGCTTGTTGGAGTATTTGAA
AGACTCCTATACACCAAAACTAAAACATGAAAGGAGACCTTACATGAATC
ATCATTTTATTGAAGGAGTCAATGTTTTGAGTCATGTTACACCAGAACTT
GGGAATAAGGCAGTTCAAGTTCTTCAAAAGATACTCGCTGGAAATATAAT
CGATGATCTCCCTAGTATTGAAGAAATTGAAAGTGTTATCTCTCTAATCA
CAGATActgaggtgagaataaacaataaaatatttgagATTGACCGAAGA
CTTTGTCATAGATGAGAAGGATGGTTCAAAACCATCTATTATTGCTGTAA
CGCTTCAACTCATTTTCGTGAAACTCTTTTTCGCAATTGACTACATTTTT
TTCTGGCATTAACAGTATAAAAACAGCGAAAAATAGAGACAAATGTACCC
TAACATAAATGTTATGTCAAGTACCTATAAGTATCTATTTATAACAGAAT
GGGATTTTCTAACAGGAAAGTTTTTACCCCttcttaaatgaaaatattaa
ccAATGTATGGATGCCCTCACTTGTAGCAAAAAGCCAATCAGATTTCCTC
CCTTGAAGTTCTTTTTCTCAACCCGTCTTCATCTTTTTGAGGCTTACCCC
ATACAAGAAAGTTACTCCAAGGATATCTTACAACATCCTCTAGAAGCAAG
AAAAACTTTTCTAGAAAAAGGCAGAAACTGATAAAGACTTACTCGTTGTG
TGGGATTCTGTTCTTACCTACCCAGCCACCAAACACAAACAGTTAATTCA
CCAAAGCCACGGAGTACGTATTGATTTCAATGCCcggattttattttcat
taatttaattttttcatttttcatcttgttattttttcatgCTTAAACGA
AATAAAATAGATTAGTATAAtagaaatttgttttaaaagatAGAA Coding sequence (CDS) from alignment at scaffold_202:676904..679148 >TCONS_00051705 ID=TCONS_00051705|Name=TCONS_00051705|organism=Clytia hemisphaerica|type=CDS|length=1347bp|location=Sequence derived from alignment at scaffold_202:676904..679148 (Clytia hemisphaerica)
ATGGAATGGGACATAGAGTATGAAGTGCTAAAAGGCGATCCAAAAGACAT
TAGCCTGAGTGAAATGACAAATCGTCCAGGCTACGTCCGACCGCGCATCT
ACGGTTTCGGAAGTAGCGGGAAAGAGTTTCGAGAAAATCTACTTGCGCGT
TTGAAAGATTTTATGGAGGCTAATAAGCCTATGGTGAAGAAAGAATTTTA
TGATATTATTCATGGAGATACTGATGACTGTGAAGATCATTGGACAGCGA
ATGAGCAGCGTTTCCCTTGGTTAGGAATCGAAACCAATGTAAAAGCTGAT
GGTCTTTCAATTGTAGTGGAAATCTTAGACAATACAGGTGGAATCCATTT
TTCGTGTGATAATATTGTTACCATAAGATGTATCGGTTATTGGCCTCCAA
GTGCAAAAGAATGGGGCTTGGGTCCTGGTTTTGAATCCCTTAATTTAGGA
GGCGAAATTGAGAAGATTAAGGAAAACGGATGTAGTATTGTTCCCAAGCC
GGAAACGGAAACAAGTGATTTGAGTTGGAGGATTTCATTATCAGATGCAG
AATCAAGGATCGTGAAAAGTTTTGACAAACAACAAAAATTGGCTTACTTC
ATTGCCAAAATAATTTATTATAAACATTTATCACACCTTAAAGATGGTAA
TTCAGAGCTTTCATCATTTGCAATTAAAAATGCAACATTCAATTATTTCC
GTATGCCGAGTGCAACTCAACAGACTATAAGTTTATCGGATTCTCTACAG
GATAGGAAGTCTAGCTTATTTCTTGATAATGACAACAAGGAGTTTTTAAG
CAAACAAAAGCCAGTGCCAACTAAATGCGTGAAAGATGATTTATCGTGGG
TTCGAGAAACTACagagtcagcaaaatttaaaagtggACACAAAATGACT
TGCCAAAGTCATCCAGACTCCTCCACAGAATCAATAACAAACCGTAAATT
CAAAGATCTAGTCCAATTTCACCAGAAACAAACACATCATCAATCGTTAT
ATGCTAagcatgaaaaaacaaaaacaaaaacaaatcttCAAGAAGCGATG
ACTCTAATTCGTGGCTTGTTGGAGTATTTGAAAGACTCCTATACACCAAA
ACTAAAACATGAAAGGAGACCTTACATGAATCATCATTTTATTGAAGGAG
TCAATGTTTTGAGTCATGTTACACCAGAACTTGGGAATAAGGCAGTTCAA
GTTCTTCAAAAGATACTCGCTGGAAATATAATCGATGATCTCCCTAGTAT
TGAAGAAATTGAAAGTGTTATCTCTCTAATCACAGATActgaggtgagaa
taaacaataaaatatttgagATTGACCGAAGACTTTGTCATAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051705-exon-scaffold_202-1491911889:676904..679148 | TCONS_00051705-exon-scaffold_202-1491911889:676904..679148 | Clytia hemisphaerica | exon |
| TCONS_00051705-exon-scaffold_202-1510915933:676904..679148 | TCONS_00051705-exon-scaffold_202-1510915933:676904..679148 | Clytia hemisphaerica | exon |
| TCONS_00051705-exon-scaffold_202-1575043694:676904..679148 | TCONS_00051705-exon-scaffold_202-1575043694:676904..679148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:676904..679148 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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