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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051691 ID=TCONS_00051691|Name=TCONS_00051691|organism=Clytia hemisphaerica|type=transcript|length=1396bp
AAGCCTTTCATGCTTATGAAAATTATTCTTGATACATATCAATTTGCTGA
TAGAAAagtatttttcttgaaaactacTTTAGTTACATTTCGTTACAAAT
GCTAAAGGGACTTTTAGTTAAAAAGAAGTAAACTTTATTCATGAGACAAA
GGTATAAATGTATTCTTTTCCAATGCTGTTACCAAGCGATCGCAAAGATT
CTCTGCAGTCTGACAACTCCCAATCAGAAGAAAGCTCCTGGGTAATTTCA
TGAATACTTTCTTTTGGGCTGTATATTGTTATCTTCCTCAAGGTAGAAAT
ACAATTTAATTGCCCGACTTGAATTTTTGCTTCTTTGAAATTGCACATTG
AATGATTAAAAGTAATTTCTTTCAAAACCATGACAGGTGTAAAGTATTTG
AAAAATAGTGTTGTCATATAGTGATACCGTGGAGGCAATATCTccaattt
tgtcaaatttttaagCATATACAAGCTTTCCATTCCACCATCTTCAAATG
ATGATTCATCAAACAAAAGCACTTGCAAATTAACAANAGCATATACACGC
TTTCCATTCCACCATCTTCAAATGATGATTCATCAAACAAAAGCACTTGC
AAATTAACAAGGTTTTCACAGAGTTTCTTTAATGATACATCAGAAATATA
ACAACACTCAAATTTTAGATAATTCAGCTTTACCAACATATGAAGTGGTC
TAAAGTCAAAACAGGTTTCAGGATCTGAGTGATGAGCCCTGTTATGACAA
CAAAGCTCCAGCTTAGTTAAGGTGCTTATTCTGCCAAGGATCTTGAGTGA
TGCAGAGTTAACAAACCATCCTTCCTCAATGTAAACCTCAGTAACTTTAT
TTTGACCATTCAATATTCGTTTTAAACCACTACAATCATCTATATCATCA
GTCTCTTGCCATTGGTTGTCCAAATCagcatttttgaatttcaatttatt
aaaaattgGCACTTTAGATAATGATTTGCCATCTTTTAGGTAGCACCGAt
caaaatggagcatgttgattTGATCAAAATGGGACAGTGCTAGTGAGGTA
CCATCCTCGAGATAAATTAAACTCAGGCATAAAACATCAATACTTTCTTT
GCAAAATGGTAAgactaatttcaaacttttctgaCAGTCTTGATTGGTTG
TGAATGTGTCAGCAATAAATGTTAACCTTCTGGTGTGACAGAGATTTGTC
AGAGGTTTACATTTAAGTTCCTCATATGAGTTTACTGGTAAACACACACT
ATGCCAAAGAACAGAGCACacagtatttttataaaaagaattacAGCATG
CCAACAACTTCAAATCTTTACTTCCACAGAAGCTAAATATTTTGGAAAGT
AACTCAAAAGGTAAATCTTCCATATTTATAAAAAGTACTAAtctat Run BLAST on NCBI protein sequence of TCONS_00051691-protein >TCONS_00051691-protein ID=TCONS_00051691-protein|Name=TCONS_00051691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
RLVLFINMEDLPFELLSKIFSFCGSKDLKLLACCNSFYKNTVCSVLWHSV
CLPVNSYEELKCKPLTNLCHTRRLTFIADTFTTNQDCQKSLKLVLPFCKE
SIDVLCLSLIYLEDGTSLALSHFDQINMLHFDRCYLKDGKSLSKVPIFNK
LKFKNADLDNQWQETDDIDDCSGLKRILNGQNKVTEVYIEEGWFVNSASL
KILGRISTLTKLELCCHNRAHHSDPETCFDFRPLHMLVKLNYLKFECCYI
SDVSLKKLCENLVNLQVLLFDESSFEDGGMESVYMXLLICKCFCLMNHHL
KMVEWKACICLKI Run BLAST on NCBI transcript from alignment at scaffold_202:227218..228613 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051691 ID=TCONS_00051691|Name=TCONS_00051691|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at scaffold_202:227218..228613 (Clytia hemisphaerica)
atagaTTAGTACTTTTTATAAATATGGAAGATTTACCTTTTGAGTTACTT
TCCAAAATATTTAGCTTCTGTGGAAGTAAAGATTTGAAGTTGTTGGCATG
CTgtaattctttttataaaaatactgtGTGCTCTGTTCTTTGGCATAGTG
TGTGTTTACCAGTAAACTCATATGAGGAACTTAAATGTAAACCTCTGACA
AATCTCTGTCACACCAGAAGGTTAACATTTATTGCTGACACATTCACAAC
CAATCAAGACTGtcagaaaagtttgaaattagtcTTACCATTTTGCAAAG
AAAGTATTGATGTTTTATGCCTGAGTTTAATTTATCTCGAGGATGGTACC
TCACTAGCACTGTCCCATTTTGATCAaatcaacatgctccattttgaTCG
GTGCTACCTAAAAGATGGCAAATCATTATCTAAAGTGCcaatttttaata
aattgaaattcaaaaatgctGATTTGGACAACCAATGGCAAGAGACTGAT
GATATAGATGATTGTAGTGGTTTAAAACGAATATTGAATGGTCAAAATAA
AGTTACTGAGGTTTACATTGAGGAAGGATGGTTTGTTAACTCTGCATCAC
TCAAGATCCTTGGCAGAATAAGCACCTTAACTAAGCTGGAGCTTTGTTGT
CATAACAGGGCTCATCACTCAGATCCTGAAACCTGTTTTGACTTTAGACC
ACTTCATATGTTGGTAAAGCTGAATTATCTAAAATTTGAGTGTTGTTATA
TTTCTGATGTATCATTAAAGAAACTCTGTGAAAACCTTGTTAATTTGCAA
GTGCTTTTGTTTGATGAATCATCATTTGAAGATGGTGGAATGGAAAGCGT
GTATATGCTNTTGTTAATTTGCAAGTGCTTTTGTTTGATGAATCATCATT
TGAAGATGGTGGAATGGAAAGCTTGTATATGcttaaaaatttgacaaaat
tggAGATATTGCCTCCACGGTATCACTATATGACAACACTATTTTTCAAA
TACTTTACACCTGTCATGGTTTTGAAAGAAATTACTTTTAATCATTCAAT
GTGCAATTTCAAAGAAGCAAAAATTCAAGTCGGGCAATTAAATTGTATTT
CTACCTTGAGGAAGATAACAATATACAGCCCAAAAGAAAGTATTCATGAA
ATTACCCAGGAGCTTTCTTCTGATTGGGAGTTGTCAGACTGCAGAGAATC
TTTGCGATCGCTTGGTAACAGCATTGGAAAAGAATACATTTATACCTTTG
TCTCATGAATAAAGTTTACTTCTTTTTAACTAAAAGTCCCTTTAGCATTT
GTAACGAAATGTAACTAAAgtagttttcaagaaaaatactTTTCTATCAG
CAAATTGATATGTATCAAGAATAATTTTCATAAGCATGAAAGGCTT Coding sequence (CDS) from alignment at scaffold_202:227218..228613 >TCONS_00051691 ID=TCONS_00051691|Name=TCONS_00051691|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_202:227218..228613 (Clytia hemisphaerica)
agaTTAGTACTTTTTATAAATATGGAAGATTTACCTTTTGAGTTACTTTC
CAAAATATTTAGCTTCTGTGGAAGTAAAGATTTGAAGTTGTTGGCATGCT
gtaattctttttataaaaatactgtGTGCTCTGTTCTTTGGCATAGTGTG
TGTTTACCAGTAAACTCATATGAGGAACTTAAATGTAAACCTCTGACAAA
TCTCTGTCACACCAGAAGGTTAACATTTATTGCTGACACATTCACAACCA
ATCAAGACTGtcagaaaagtttgaaattagtcTTACCATTTTGCAAAGAA
AGTATTGATGTTTTATGCCTGAGTTTAATTTATCTCGAGGATGGTACCTC
ACTAGCACTGTCCCATTTTGATCAaatcaacatgctccattttgaTCGGT
GCTACCTAAAAGATGGCAAATCATTATCTAAAGTGCcaatttttaataaa
ttgaaattcaaaaatgctGATTTGGACAACCAATGGCAAGAGACTGATGA
TATAGATGATTGTAGTGGTTTAAAACGAATATTGAATGGTCAAAATAAAG
TTACTGAGGTTTACATTGAGGAAGGATGGTTTGTTAACTCTGCATCACTC
AAGATCCTTGGCAGAATAAGCACCTTAACTAAGCTGGAGCTTTGTTGTCA
TAACAGGGCTCATCACTCAGATCCTGAAACCTGTTTTGACTTTAGACCAC
TTCATATGTTGGTAAAGCTGAATTATCTAAAATTTGAGTGTTGTTATATT
TCTGATGTATCATTAAAGAAACTCTGTGAAAACCTTGTTAATTTGCAAGT
GCTTTTGTTTGATGAATCATCATTTGAAGATGGTGGAATGGAAAGCGTGT
ATATGCTNTTGTTAATTTGCAAGTGCTTTTGTTTGATGAATCATCATTTG
AAGATGGTGGAATGGAAAGCTTGTATATGcttaaaaatttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051691-exon-scaffold_202-1491911889:227218..228613 | TCONS_00051691-exon-scaffold_202-1491911889:227218..228613 | Clytia hemisphaerica | exon |
| TCONS_00051691-exon-scaffold_202-1510915933:227218..228613 | TCONS_00051691-exon-scaffold_202-1510915933:227218..228613 | Clytia hemisphaerica | exon |
| TCONS_00051691-exon-scaffold_202-1575043694:227218..228613 | TCONS_00051691-exon-scaffold_202-1575043694:227218..228613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:227218..228613 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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