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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051681 ID=TCONS_00051681|Name=TCONS_00051681|organism=Clytia hemisphaerica|type=transcript|length=1621bp
CTTCAGCAATTTTGTCACGATAAGCTTGATAGTCTTCTAATCTGGAGCCC
ACTGCGAAACGTGGAACATCTTCAATATCATCAGCGTCATCATGCGCTTC
TCTTTCGATAACAACAAAGGAGTTATCTTCCTCGtggaaaatacaaaaat
tgtgTATTATGATGCATGTATATATAAGTTGGTTAATATTTGCAATGTTG
TCCATTTCGATGTGATTTAGtctttgaaattttcctttcaGGAGACCAAA
TGCACGTTCAATGGTTACACGTGTGGAAGATAAGACATAATTGAAATGTC
GCTGGACAGGATTAAGTCCCTTTCCCGATTTTTTATAAGGTGTCAATAAG
GTTGGGGAGAGGGGATATGCACTGTCACCAAGAATGTAACTTCCATCTGG
ACACATTGTCTCAGGGCTTTCTTCAATTTGTATCGCTATTCCTgagtttt
gaaaaactttgctgTCGTGAGCGCTACCAGGCCAACCACAGTAAATGTCA
ATAAATGCTAACCTGTGATCACATATTGCCTGaaatataaaatgaatttt
ttttttgacttctcAGGCAAACTACAGCCTGTGAAAAAATCGATGAATCA
AAAGGCACGGTTTTTCCGGTTTTCCCACctctttttggcaaaattcTTTA
AACTTTCACTTTAGAATTATGAAAAAGTGCTGaaattaaaatgtttgttt
CTTCTCCATGAATATATTTACCTGCAAATTAATCGAATAAAATCCTTTTC
GATTGTAATacgtttcaaaatctttggttGGCTTCTTGATCGGTATGTGA
GAGCCATCAACGGAACCAATTATTTTGGTCAAGCCCTTCTTTGAAAATAC
CAGCATGGTTTCTTTGGCTTCATTTCTGCTTGGCCATCTGATAAGGTGCT
TGAGATTATTGATAATTGCTTTACCAATCCTATCAACACTTAATGTCGCA
GTGGTCGTGCAAACACCAAAACGATCTGCCAGGCGGATGAAGTTGTCCTG
TGTTGCAGCATACCAGAGGAACATCAACAGCTGGTCTTTGACTGCAGTCA
TCTCCATAcctgcaaaaaatgaaaatattttccaaattttgatcgattca
aaaatatttttcggcTGTGGCCGTGTATCAACTAAACCTGACTGAGTGAG
ATTGGGTTTAGAATAAGCATCAGCATGCTTTAGACATTAACAAAAATTAT
TCTCCCTTACACAAAAAAATCCATACCATCCAATATACATAACTATACAT
ACATACCTCcactattttgtttcaaaaatatctCATCCATGCAAATTGCT
CCCAGTAAAGTGTCAAAGGTCGATCTTGTCATTCTAAACATTGCTGTATT
CGGGTGGTAGGTATCGATGAAAGGTATGAATTCTTTATGTTTACTGTATT
TTTCTCTGGTGCAGCAACCAGGCAACATCTCAGAGAAGGCAGCTGTAGTT
GCCATAACCATTCGTTTTTTAGAGGTGCTTGGCTCTTCTCGTAATATTTC
CATTTCATTGTCATCAAATAGACTTAGAGCAAGAGCTGAGATGATTTGTC
TACGTTTTGACATCATATTATAATTGATTGTTTGTGTTTAAGTGGTAACT
TTTTAACCAGCAACAACAAAA Run BLAST on NCBI protein sequence of TCONS_00051681-protein >TCONS_00051681-protein ID=TCONS_00051681-protein|Name=TCONS_00051681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MCPDGSYILGDSAYPLSPTLLTPYKKSGKGLNPVQRHFNYVLSSTRVTIE
RAFGLLKGKFQRLNHIEMDNIANINQLIYTCIIIHNFCIFHEEDNSFVVI
EREAHDDADDIEDVPRFAVGSRLEDYQAYRDKIAE Run BLAST on NCBI transcript from alignment at scaffold_202:86562..88182 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051681 ID=TCONS_00051681|Name=TCONS_00051681|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at scaffold_202:86562..88182 (Clytia hemisphaerica)
TTTTGTTGTTGCTGGTTAAAAAGTTACCACTTAAACACAAACAATCAATT
ATAATATGATGTCAAAACGTAGACAAATCATCTCAGCTCTTGCTCTAAGT
CTATTTGATGACAATGAAATGGAAATATTACGAGAAGAGCCAAGCACCTC
TAAAAAACGAATGGTTATGGCAACTACAGCTGCCTTCTCTGAGATGTTGC
CTGGTTGCTGCACCAGAGAAAAATACAGTAAACATAAAGAATTCATACCT
TTCATCGATACCTACCACCCGAATACAGCAATGTTTAGAATGACAAGATC
GACCTTTGACACTTTACTGGGAGCAATTTGCATGGATGagatatttttga
aacaaaatagtgGAGGTATGTATGTATAGTTATGTATATTGGATGGTATG
GATTTTTTTGTGTAAGGGAGAATAATTTTTGTTAATGTCTAAAGCATGCT
GATGCTTATTCTAAACCCAATCTCACTCAGTCAGGTTTAGTTGATACACG
GCCACAgccgaaaaatatttttgaatcgatcaaaatttggaaaatatttt
cattttttgcaggTATGGAGATGACTGCAGTCAAAGACCAGCTGTTGATG
TTCCTCTGGTATGCTGCAACACAGGACAACTTCATCCGCCTGGCAGATCG
TTTTGGTGTTTGCACGACCACTGCGACATTAAGTGTTGATAGGATTGGTA
AAGCAATTATCAATAATCTCAAGCACCTTATCAGATGGCCAAGCAGAAAT
GAAGCCAAAGAAACCATGCTGGTATTTTCAAAGAAGGGCTTGACCAAAAT
AATTGGTTCCGTTGATGGCTCTCACATACCGATCAAGAAGCCaaccaaag
attttgaaacgtATTACAATCGAAAAGGATTTTATTCGATTAATTTGCAG
GTAAATATATTCATGGAGAAGaaacaaacattttaatttCAGCACTTTTT
CATAATTCTAAAGTGAAAGTTTAAAgaattttgccaaaaagagGTGGGAA
AACCGGAAAAACCGTGCCTTTTGATTCATCGATTTTTTCACAGGCTGTAG
TTTGCCTgagaagtcaaaaaaaaaattcattttatatttCAGGCAATATG
TGATCACAGGTTAGCATTTATTGACATTTACTGTGGTTGGCCTGGTAGCG
CTCACGAcagcaaagtttttcaaaactcAGGAATAGCGATACAAATTGAA
GAAAGCCCTGAGACAATGTGTCCAGATGGAAGTTACATTCTTGGTGACAG
TGCATATCCCCTCTCCCCAACCTTATTGACACCTTATAAAAAATCGGGAA
AGGGACTTAATCCTGTCCAGCGACATTTCAATTATGTCTTATCTTCCACA
CGTGTAACCATTGAACGTGCATTTGGTCTCCtgaaaggaaaatttcaaag
aCTAAATCACATCGAAATGGACAACATTGCAAATATTAACCAACTTATAT
ATACATGCATCATAATAcacaatttttgtattttccaCGAGGAAGATAAC
TCCTTTGTTGTTATCGAAAGAGAAGCGCATGATGACGCTGATGATATTGA
AGATGTTCCACGTTTCGCAGTGGGCTCCAGATTAGAAGACTATCAAGCTT
ATCGTGACAAAATTGCTGAAG Coding sequence (CDS) from alignment at scaffold_202:86562..88182 >TCONS_00051681 ID=TCONS_00051681|Name=TCONS_00051681|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_202:86562..88182 (Clytia hemisphaerica)
ATGTGTCCAGATGGAAGTTACATTCTTGGTGACAGTGCATATCCCCTCTC
CCCAACCTTATTGACACCTTATAAAAAATCGGGAAAGGGACTTAATCCTG
TCCAGCGACATTTCAATTATGTCTTATCTTCCACACGTGTAACCATTGAA
CGTGCATTTGGTCTCCtgaaaggaaaatttcaaagaCTAAATCACATCGA
AATGGACAACATTGCAAATATTAACCAACTTATATATACATGCATCATAA
TAcacaatttttgtattttccaCGAGGAAGATAACTCCTTTGTTGTTATC
GAAAGAGAAGCGCATGATGACGCTGATGATATTGAAGATGTTCCACGTTT
CGCAGTGGGCTCCAGATTAGAAGACTATCAAGCTTATCGTGACAAAATTG
CTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051681-exon-scaffold_202-1491911889:86562..88182 | TCONS_00051681-exon-scaffold_202-1491911889:86562..88182 | Clytia hemisphaerica | exon |
| TCONS_00051681-exon-scaffold_202-1510915933:86562..88182 | TCONS_00051681-exon-scaffold_202-1510915933:86562..88182 | Clytia hemisphaerica | exon |
| TCONS_00051681-exon-scaffold_202-1575043694:86562..88182 | TCONS_00051681-exon-scaffold_202-1575043694:86562..88182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:86562..88182 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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