TCONS_00051676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051676
Unique NameTCONS_00051676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051676 ID=TCONS_00051676|Name=TCONS_00051676|organism=Clytia hemisphaerica|type=transcript|length=789bp
CTTGGCTCAAAGCCAATAAAATATCCCTATGCtggaaaaacagaattttt
aattttcagacactgtcgaaaaattcttccttttgtcccttttcttaaaa
ttggaggtaagaaaatttttcaaagttcaaatatcaaatatcttgGCGTT
TTGATTGACATGCACCTTAACTGGAAAGCCCACAACACATCTTTATCAGC
TAAACTTGCCAGAGCAAATGGTATTATATCTAAGCTCAGGCACtatgttt
caacaaaaaccTTAGTTAACATTTACTATGCTCTTTTTCATTCCCATCTT
CAATATGGTTGACAACTCTGGGGTCTCACTGACAATACCACTTCTAAGCC
TATATTTATCCTTCAAAAGAAAGCCTTACgtcttattacttttaacaact
tTCGATGCCCTTCTTCTCCACTCTTTTCTGACCTCAAAATTCTCAAGATT
TTTGACCTTGTCAAATGCcttaatatatcttttgtccACAGATTCCTAAA
TAACAAAATACcctttgaccttctggagttttttaactttattcagCTCG
ATGCTGAAGATGAAAACACTCAAAGTACCAGAGTAGCATGTTTGAAACTA
CTTTTTGTTCCCTCCTACAACACCATTACCTTTGGTAACAAATCTTTCTC
TAAGTTTTGCATAACACATTCGAACAGCATCCAGCGATCTTACCCAAATA
TTACCCTGAGCTCATCTGATTTCAGTTTTGTTAAATCTCTCGCCCTTACT
CACTGTCTTGGGAGATACTGAGCACACCCCTCCCCTACC
Run BLAST on NCBI

transcript from alignment at scaffold_202:14239..15027

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051676 ID=TCONS_00051676|Name=TCONS_00051676|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at scaffold_202:14239..15027 (Clytia hemisphaerica)
GGTAGGGGAGGGGTGTGCTCAGTATCTCCCAAGACAGTGAGTAAGGGCGA
GAGATTTAACAAAACTGAAATCAGATGAGCTCAGGGTAATATTTGGGTAA
GATCGCTGGATGCTGTTCGAATGTGTTATGCAAAACTTAGAGAAAGATTT
GTTACCAAAGGTAATGGTGTTGTAGGAGGGAACAAAAAGTAGTTTCAAAC
ATGCTACTCTGGTACTTTGAGTGTTTTCATCTTCAGCATCGAGctgaata
aagttaaaaaactccagaaggtcaaaggGTATTTTGTTATTTAGGAATCT
GTggacaaaagatatattaagGCATTTGACAAGGTCAAAAATCTTGAGAA
TTTTGAGGTCAGAAAAGAGTGGAGAAGAAGGGCATCGAaagttgttaaaa
gtaataagacGTAAGGCTTTCTTTTGAAGGATAAATATAGGCTTAGAAGT
GGTATTGTCAGTGAGACCCCAGAGTTGTCAACCATATTGAAGATGGGAAT
GAAAAAGAGCATAGTAAATGTTAACTAAggtttttgttgaaacataGTGC
CTGAGCTTAGATATAATACCATTTGCTCTGGCAAGTTTAGCTGATAAAGA
TGTGTTGTGGGCTTTCCAGTTAAGGTGCATGTCAATCAAAACGCcaagat
atttgatatttgaactttgaaaaattttcttacctccaattttaagaaaa
gggacaaaaggaagaatttttcgacagtgtctgaaaattaaaaattctgt
ttttccaGCATAGGGATATTTTATTGGCTTTGAGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032707XLOC_032707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051676-exon-scaffold_202-1491911889:14239..15027TCONS_00051676-exon-scaffold_202-1491911889:14239..15027Clytia hemisphaericaexon
TCONS_00051676-exon-scaffold_202-1510915933:14239..15027TCONS_00051676-exon-scaffold_202-1510915933:14239..15027Clytia hemisphaericaexon
TCONS_00051676-exon-scaffold_202-1575043694:14239..15027TCONS_00051676-exon-scaffold_202-1575043694:14239..15027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:14239..15027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30588	1.35178	3.28012	4.77665	3.55174	2.89421	3.26268	2.80598	1.46773	1.92156	1.21657	1.07669	1.68328	1.17774	0.761701	0.606996	0.876858	1.15822	1.02398	1.73478	2.18579	1.71025	0.650317	0.831134	2.49669	2.90498	1.55303	1.85512	1.59956	1.07161
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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