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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051660 ID=TCONS_00051660|Name=TCONS_00051660|organism=Clytia hemisphaerica|type=transcript|length=1282bp
AATTAGAAtagaaaatttctttattgGAAATAAAACGTCCTGTAGTGATA
TTTACATCGATAAATGAGATATACAGTGTGTCCAGGAAAACTCACACAAC
TCAATGTTACtactcaattcaaatttttgaatagAAAATAATTAACTTTG
GAAATTTAATTCTATAGACACTCTTACCCAGATCCATTGCACCTTTTTTT
GATTTCACTGATAAACATAATACAATCCTAtcacagaatcataaaaaagc
caGCCaaaggactgggttcgagtttgtcATGATtactatacacccctgtc
tcgcagccccggtggaacttttttcctcatagtggggataaaaattcctg
ttgaaatctcaatgggggatagaaattctattgttccaaggtttaaAAAA
CCCGGTGGGGGTGGTTTTAGAGTACAATTTTTTAAACACTGAATTTCGAA
CgcgaatgaaatcaaagtcaatttcccagtggggtatATTCCggggtatt
tttccaccggggacgaaatttttgtcaaattttctagtggggctggggtc
caagtgggtctgtgacacaggggtgttactATCAACAAGAAGCCACGGGG
GTTCTAGTTTATATCAAGGTTGTGCCGCTTTTTCTGGACACACTGTTAAT
GGAAAATGTCATAATTTTCTCTTAGATACTAAAAAACTAGATAATAATTT
ACAATAATGAAATCAataatatcaaccaatcaatgaGATTCGCTATCGAT
CAACAAATGGTCACAAATTTCAATCCGAAAAATTATGGTAAGAAAATCTt
gaacactttttttaaaatatgTGAGTAAAAACCTTGGACATCGATAATGC
AGGCGAAATTGTCTTATACTTTATTGCTTTTTTGTACACCAGGGCCATTA
ATTTTCAGCCGAATGTGAATTTTGGTTTGCCATTATTCTCTTGCCAGATA
aaactcttttttctcaaatcgGAATAACTTTGTTCACAGCGGTATTATTG
TTCCAAATATAGGCATCTCCTGGTTATCCTTGCCTTTCACCGCTTCAAAT
AGGATACTTTTTATTCTGTTCGTAACCAATAAACACCAATCTTTTGTACA
TCTCCAGCTCAAAATAACAATCATCATGAATAATTGGAATAAAATAACCT
ATCAACAATCATTCTCCGTATGGTTTTTCCAGTCGCGCGTGACATGTCGG
TAAATGATACTCGGTGTAATGAGCTATGAGATCAGGTAAGCGTTCAAAGA
ACGGTTCATCATCTTTCaaatatagtttgttc Run BLAST on NCBI transcript from alignment at scaffold_202:1156906..1158256- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051660 ID=TCONS_00051660|Name=TCONS_00051660|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_202:1156906..1158256- (Clytia hemisphaerica)
AATTAGAATAGAAAATTTCTTTATTGGAAATAAAACGTCCTGTAGTGATA
TTTACATCGATAAATGAGATATACAGTGTGTCCAGGAAAACTCACACAAC
TCAATGTTACTACTCAATTCAAATTTTTGAATAGAAAATAATTAACTTTG
GAAATTTAATTCTATAGACACTCTTACCCAGATCCATTGCACCTTTTTTT
GATTTCACTGATAAACATAATACAATCCTATCACAGAATCATAAAAAAGC
CAGCCAAAGGACTGGGTTCGAGTTTGTCATGATTACTATACACCCCTGTC
TCGCAGCCCCGGTGGAACTTTTTTCCTCATAGTGGGGATAAAAATTCCTG
TTGAAATCTCAATGGGGGATAGAAATTCTATTGTTCCAAGGTTTAAAAAA
CCCGGTGGGGGTGGTTTTAGAGTACAATTTTTTAAACACTGAATTTCGAA
CGCGAATGAAATCAAAGTCAATTTCCCAGTGGGGTATATTCCGGGGTATT
TTTCCACCGGGGACGAAATTTTTGTCAAATTTTCTAGTGGGGCTGGGGTC
CAAGTGGGTCTGTGACACAGGGGTGTTACTATCAACAAGAAGCCACGGGG
GTTCTAGTTTATATCAAGGTTGTGCCGCTTTTTCTGGACACACTGTTAAT
GGAAAATGTCATAATTTTCTCTTAGATACTAAAAAACTAGATAATAATTT
ACAATAATGAAATCAATAATATCAACCAATCAATGAGATTCGCTATCGAT
CAACAAATGGTCACAAATTTCAATCCGAAAAATTATGGTAAGAAAATCTT
GAACACTTTTTTTAAAATATGTGAGTAAAAACCTTGGACATCGATAATGC
AGGCGAAATTGTCTTATACTTTATTGCTTTTTTGTACACCAGGGCCATTA
ATTTTCAGCCGAATGTGAATTTTGGTTTGCCATTATTCTCTTGCCAGATA
AAACTCTTTTTTCTCAAATCGGAATAACTTTGTTCACAGCGGTATTATTG
TTCGATAAAAATCAAGAAAACAAAAATTTGTTCAATTTATTGTAAAAGCT
TTTCGACTAGGTATTATTGTTCCAAATATAGGCATCTCCTGGTTATCCTT
GCCTTTCACCGCTTCAAATAGGATACTTTTTATTCTGTTCGTAACCAATA
AACACCAATCTTTTGTACATCTCCAGCTCAAAATAACAATCATCATGAAT
AATTGGAATAAAATAACCTATCAACAATCATTCTCCGTATGGTTTTTCCA
GTCGCGCGTGACATGTCGGTAAATGATACTCGGTGTAATGAGCTATGAGA
TCAGGTAAGCGTTCAAAGAACGGTTCATCATCTTTCAAATATAGTTTGTT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051660-exon-scaffold_202-1575043694:1157266..1158256 | TCONS_00051660-exon-scaffold_202-1575043694:1157266..1158256 | Clytia hemisphaerica | exon |
| TCONS_00051660-exon-scaffold_202-1575043694:1156906..1157196 | TCONS_00051660-exon-scaffold_202-1575043694:1156906..1157196 | Clytia hemisphaerica | exon |
| TCONS_00051660-exon-scaffold_202-1510915933:1157266..1158256 | TCONS_00051660-exon-scaffold_202-1510915933:1157266..1158256 | Clytia hemisphaerica | exon |
| TCONS_00051660-exon-scaffold_202-1510915933:1156906..1157196 | TCONS_00051660-exon-scaffold_202-1510915933:1156906..1157196 | Clytia hemisphaerica | exon |
| TCONS_00051660-exon-scaffold_202-1491911889:1157266..1158256 | TCONS_00051660-exon-scaffold_202-1491911889:1157266..1158256 | Clytia hemisphaerica | exon |
| TCONS_00051660-exon-scaffold_202-1491911889:1156906..1157196 | TCONS_00051660-exon-scaffold_202-1491911889:1156906..1157196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1156906..1158256 - |
Blast
The following BLAST results are available for this feature:
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