TCONS_00051648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051648
Unique NameTCONS_00051648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051648 ID=TCONS_00051648|Name=TCONS_00051648|organism=Clytia hemisphaerica|type=transcript|length=1296bp
attatccagcgcactttttatcttcttacattcttcattttcaatgaagc
actcgaagtttactgaaggtaagcacatgagatattcttataattaatga
tattcattgaaacacgcttcgttgcgcgctgcggtggagtgcatgacgta
actcgcgcagCAACTAACTccccttctgttggaagatcatattggtcgtt
ttggcgttaccaccctcgaagcagcgggcgcctttgtctttccgcaactc
tttccactattttagatggccttaacaatagatccaaaagggtgccataa
tcttggaagataatttgttttggtctctgGCTTTGGAAAGTAGcaaatgt
ttttggttgttttcgatggaaaatgGGATTCACCTGGGGACAGTGAATAC
AAAAGACAAGTGGATGACAAGCTACATCGGAAGAAAGAAAGATcagttaa
aacaaaagaaattgagCTAAAACACGACAAGCGTTATCAGAGAGATAAAC
ATCGTTCAAAGGATGAAAGAAGTAGAGATACAATTTCTGGCGATGACAGT
AGAAAAAAACATGAACTAGAACAGGATTTGAAGAGGACTCACAATAAAGA
ACATCGTAAACATGATAATGAATGGGAGCACAAACAGCGGCTTTCCCACT
CAGATTCTAATGAGAAGCATTCAGGGCATGATCATGATCACAATCATTCT
GATAAAAAACATgacattaaaattaaaaaggaaCCCTCAGGGTGGGATGA
TGAAAAGCCACGTCCTGACCAAACAGAAAATAAACGTAGACAAGAAGAAG
ATAGGGATAGAGACCGTGAAAAAAGGGATAGAAACAGACATAATAATAGG
GATAGAGACGGACATGATGTGCATAGAGATAGAAACTCACGCGATAATAG
AGATAATCAGAATAGAAATGATTCTAATAGACAAAGACATTCAAACCGTG
AATGGGATAGGGGTAAGCGTGCTAACAGAAGAGAAGAAGATGACTCAAAT
TTTAATTTTGGTGCCGAAGGAAGGGATGAAAGTAGCACCAATGACAAAAA
AGAAACCGTGTCGAAGGAGGAACCAAATTATGAATTATCTGGGAAACTTA
CCGAATATACAAATACATACAATggaGTTGTCATTAAATATAATGAACCT
TCAGAAGCAAGGAAGCCTAAAACAAAATGGAGACTTTATCCATTCAAAGG
AGACAAATCTTTACccttattaCAAATCCACAGACAGAGTGCCTTCTTGC
TGGGCAGGGATCGAAAGGTATTCAGATACAACTAACAAGAAACAAA
Run BLAST on NCBI

protein sequence of TCONS_00051648-protein

>TCONS_00051648-protein ID=TCONS_00051648-protein|Name=TCONS_00051648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MFLVVFDGKWDSPGDSEYKRQVDDKLHRKKERSVKTKEIELKHDKRYQRD
KHRSKDERSRDTISGDDSRKKHELEQDLKRTHNKEHRKHDNEWEHKQRLS
HSDSNEKHSGHDHDHNHSDKKHDIKIKKEPSGWDDEKPRPDQTENKRRQE
EDRDRDREKRDRNRHNNRDRDGHDVHRDRNSRDNRDNQNRNDSNRQRHSN
REWDRGKRANRREEDDSNFNFGAEGRDESSTNDKKETVSKEEPNYELSGK
LTEYTNTYNGVVIKYNEPSEARKPKTKWRLYPFKGDKSLPLLQIHRQSAF
LLGRDRKVFRYN
Run BLAST on NCBI

transcript from alignment at scaffold_202:684933..688418-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051648 ID=TCONS_00051648|Name=TCONS_00051648|organism=Clytia hemisphaerica|type=transcript|length=3486bp|location=Sequence derived from alignment at scaffold_202:684933..688418- (Clytia hemisphaerica)
ATTATCCAGCGCACTTTTTATCTTCTTACATTCTTCATTTTCAATGAAGC
ACTCGAAGTTTACTGAAGGTAAGCACATGAGATATTCTTATAATTAATGA
TATTCATTGAAACACGCTTCGTTGCGCGCTGCGGTGGAGTGCATGACGTA
ACTCGCGCAGCAACTAACTCCCCTTCTGTTGGAAGATCATATTGGTCGTT
TTGGCGTTACCACCCTCGAAGCAGCGGGCGCCTTTGTCTTTCCGCAACTC
TTTCCACTATTTTAGATGGCCTTAACAATAGATCCAAAAGGGTGCCATAA
TCTTGGAAGATAATTTGTTTTGGTCTCTGGCTTTGGAAAGTAGCAAATGT
TTTTGGTTGTTTTCGATGGAAAATGGTAAGAAATTTAAATTTGACAAGTG
TCATTTAGTTTTTGCTGGCTTATAGAATGGCAGGATCCTGGATGGTTTCC
CTAACTAAATGTGAAGTCAATAATAGCAATAGAAAAAAGTCATTTGACAG
CAATTTCCGTATATTTATAGGATAAGAATACAAAGATTCAACCAGGGGTT
TGTATTAGCTTGGGCTAATTGGGCTTGGGTTTCATTGATTTTTGATAGTT
TTTAAACTTTGACGTTAAGAGACGGGGGTTTTCAAATTAGCATCAATTTG
ACGTTAGTCGTGGGAAGAATCGATATGTGAGTGACCCCTTAGGGCAATGT
TTATGGTTTTTCTGAAGTACATAAGATGGGAAGACCTAAAAAAACAGAAA
AGGAGAAATTAGGGGAACAATTCTATCAAAAGCTATTGGCAAAGAAAGTC
ACTTTTGAGGTGGAAATGATGGTTTTACTTGCATAACTTTTTATTGCAGT
ACCTCCGTCTTGTCCCGGTTTGACTTTGTATTTTTTGCAATTTTTTGTAT
TTGCGATGTTAGCTTTTTTAGACTTATGCAAATAAATGGATAGAAATAGA
AATGACAACCGGTAGTTGAGTACATCAGAAACATGGACAGTGTTAATTTT
TGATAAAAAAATTAATAAGTCTCCTTTGGCTTTGCTTCTTTTTCAATGAG
GAACGATACCCCATATTTAAGGACGTCCTTATTTAAGGACCGGGTCCAAT
TGAAAAAAGCTATTTTTTATTAGGTTTCTGGATCCATATTTCATGCTGAA
TTTTTTTGCAAAAATAAAAAAAACTGTATTTGACCTGCTTTTTATAGTTT
GCAATTTTTGTACAGAAGCAATACCAAATTGCACAAGGCCGCCATTCCAA
ATAACTTGTTTTTGTGACAATTTTAGGTAAAAAAATGAGTCGATCAGTTA
GTCGGACAGAGCCTAAACAAAGAATCAAATAGAATTTCTATTATTGATTT
TAAAGATTGATTGGTTAGGATTTTTACGATCTTGATTTTTAGGGATTCAC
CTGGGGACAGTGAATACAAAAGACAAGTGGATGACAAGCTACATCGGAAG
AAAGAAAGATCAGTTAAAACAAAAGAAATTGAGCTAAAACACGACAAGCG
TTATCAGAGAGATAAACATCGTTCAAAGGATGAAAGAAGTAGAGATACAA
TTTCTGGCGATGACAGTAGAAAAAAACATGAACTAGAACAGGATTTGAAG
AGGACTCACAATAAAGAACATCGTAAACATGATAATGAATGGGAGCACAA
ACAGCGGCTTTCCCACTCAGATTCTAATGAGAAGCATTCAGGGCATGATC
ATGATCACAATCATTCTGATAAAAAACATGACATTAAAATTAAAAAGGAA
CCCTCAGGGTGGGATGATGAAAAGCCACGTCCTGACCAAACAGAAAATAA
ACGTAGACAAGAAGAAGATAGGGATAGAGACCGTGAAAAAAGGGATAGAA
ACAGACATAATAATAGGGATAGAGACGGACATGATGTGCATAGAGATAGA
AACTCACGCGATAATAGAGATAATCAGAATAGAAATGATTCTAATAGACA
AAGACATTCAAACCGTGAATGGGATAGGGGTAAGCGTGCTAACAGAAGAG
AAGAAGATGACTCAAATTTTAAGTATGATTTTATATTTTCATTTTCAAAA
TTTGAGTTAAAAGTAACATGCTTCCTACATTACCCTAAGAAATGAAGAGT
TCTTGAATTTAAAGACCAATGGAATAGCCACATTTTAACAAATCAATTTC
TAAAAAATAATAAACTGACTAGTATTCCAGAATTTTGATACAAGTTAGGC
TTGATGATATCATTTTTGGAACCATTCTCAAATCACAGTACATATTGCTC
CTTGATCATTAGTTTTGGTGCCGAAGGAAGGGATGAAAGTAGCACCAATG
ACAAAAAAGAAACCGTGTCGAAGGAGGAACCAAATTATGAATTATCTGGG
AAACTTACCGAATATACAAATACATACAATGTAAATGTTTATCAACTTTC
TTTTCAATTTTCTCTGATTAGTTTGCTTTCTCTTTGTAAAAATTGTATCA
TAATTATTTTGAAGTAAAACATTTTATGAAAGAACAAGGGTGATCAAGGT
TGGGATCAGTTTACTGGTCAACAGTAACTTTTTCAACTTGAAAATTATTA
GAAATTCCTATTGAAGTCAAAATCTTTTATATAGATTCATAATAACAGCT
TGTTAAGTTTCATCCAGATCTAAGATGACACTTTTGATTTAAATTTCTAT
TTAAAGTTCTATTTTTTTATTTTAGGGAGTTGTCATTAAATATAATGAAC
CTTCAGAAGCAAGGAAGCCTAAAACAAAATGGAGACTTTATCCATTCAAA
GGAGACAAATCTTTACGTAAGTTTTAATAAAGAGAATACAGCTACAGGGC
CTACCAGGACGACAGGTTTTTTATAAGGTAGAAGACAGCCCAACCATAAA
TTTCTAAAGACATGTTGTGCTGTCAGGATGTCTACACAACGCGTTGAGTT
TGCAAAGTAATCAGTTTTTTACTCAAGATTCCTTTTACTTTCCAAGGGGA
TATTCAGGGTTGCCTGAAATGTCTGGAATTAAGTCAAAGTTAAAGTCTGG
AAATGTCTGGAATAAGTCTGGAATTGGCATACTTAAGTCTAAAAAAGTCT
GAAATAGGTATACCTGTCTGGAAAAGATTTGAAGGAAATAGTCCTGAATG
AAGTGTAGTAAACTTTCCGGAAATGGGAAACTTTCATCTGATGTATTCAT
CAATCTGGCTTTTCAAATGACCGTTAAAGAAAAACTAAAAATCTTCCCAA
TGGATAAAATGTCTGGAAAATATTGCGTGTTTCGCTAAAATATCTGGAAA
ATATTTGGCATTTTCAGGTAAAGAATCTGGAAAAAACATGGCTTTTGAGA
CTAAAAATCTGGAATTTTCAACTTGGCAAACCTGTAGCAACCCTTAATGA
TCTGGATTTTAAAGGAGCTAAATTTACTTGTTTTTCCTTCCTTTTTATTT
TCAGCCTTATTACAAATCCACAGACAGAGTGCCTTCTTGCTGGGCAGGGA
TCGAAAGGTATTCAGATACAACTAACAAGAAACAAA

Coding sequence (CDS) from alignment at scaffold_202:684933..688418-

>TCONS_00051648 ID=TCONS_00051648|Name=TCONS_00051648|organism=Clytia hemisphaerica|type=CDS|length=4695bp|location=Sequence derived from alignment at scaffold_202:684933..688418- (Clytia hemisphaerica)
CCTTATTACAAATCCACAGACAGAGTGCCTTCTTGCTGGGCAGGGATCGA
AAGGTATTCAGATACAACTAAGGAGTTGTCATTAAATATAATGAACCTTC
AGAAGCAAGGAAGCCTAAAACAAAATGGAGACTTTATCCATTCAAAGGAG
ACAAATCTTTACTTTTGGTGCCGAAGGAAGGGATGAAAGTAGCACCAATG
ACAAAAAAGAAACCGTGTCGAAGGAGGAACCAAATTATGAATTATCTGGG
AAACTTACCGAATATACAAATACATACAATGGATTCACCTGGGGACAGTG
AATACAAAAGACAAGTGGATGACAAGCTACATCGGAAGAAAGAAAGATCA
GTTAAAACAAAAGAAATTGAGCTAAAACACGACAAGCGTTATCAGAGAGA
TAAACATCGTTCAAAGGATGAAAGAAGTAGAGATACAATTTCTGGCGATG
ACAGTAGAAAAAAACATGAACTAGAACAGGATTTGAAGAGGACTCACAAT
AAAGAACATCGTAAACATGATAATGAATGGGAGCACAAACAGCGGCTTTC
CCACTCAGATTCTAATGAGAAGCATTCAGGGCATGATCATGATCACAATC
ATTCTGATAAAAAACATGACATTAAAATTAAAAAGGAACCCTCAGGGTGG
GATGATGAAAAGCCACGTCCTGACCAAACAGAAAATAAACGTAGACAAGA
AGAAGATAGGGATAGAGACCGTGAAAAAAGGGATAGAAACAGACATAATA
ATAGGGATAGAGACGGACATGATGTGCATAGAGATAGAAACTCACGCGAT
AATAGAGATAATCAGAATAGAAATGATTCTAATAGACAAAGACATTCAAA
CCGTGAATGGGATAGGGGTAAGCGTGCTAACAGAAGAGAAGAAGATGACT
CAAATTTTAAATGTTTTTGGTTGTTTTCGATGGAAAATGCCTTATTACAA
ATCCACAGACAGAGTGCCTTCTTGCTGGGCAGGGATCGAAAGGTATTCAG
ATACAACTAAGGAGTTGTCATTAAATATAATGAACCTTCAGAAGCAAGGA
AGCCTAAAACAAAATGGAGACTTTATCCATTCAAAGGAGACAAATCTTTA
CTTTTGGTGCCGAAGGAAGGGATGAAAGTAGCACCAATGACAAAAAAGAA
ACCGTGTCGAAGGAGGAACCAAATTATGAATTATCTGGGAAACTTACCGA
ATATACAAATACATACAATGGATTCACCTGGGGACAGTGAATACAAAAGA
CAAGTGGATGACAAGCTACATCGGAAGAAAGAAAGATCAGTTAAAACAAA
AGAAATTGAGCTAAAACACGACAAGCGTTATCAGAGAGATAAACATCGTT
CAAAGGATGAAAGAAGTAGAGATACAATTTCTGGCGATGACAGTAGAAAA
AAACATGAACTAGAACAGGATTTGAAGAGGACTCACAATAAAGAACATCG
TAAACATGATAATGAATGGGAGCACAAACAGCGGCTTTCCCACTCAGATT
CTAATGAGAAGCATTCAGGGCATGATCATGATCACAATCATTCTGATAAA
AAACATGACATTAAAATTAAAAAGGAACCCTCAGGGTGGGATGATGAAAA
GCCACGTCCTGACCAAACAGAAAATAAACGTAGACAAGAAGAAGATAGGG
ATAGAGACCGTGAAAAAAGGGATAGAAACAGACATAATAATAGGGATAGA
GACGGACATGATGTGCATAGAGATAGAAACTCACGCGATAATAGAGATAA
TCAGAATAGAAATGATTCTAATAGACAAAGACATTCAAACCGTGAATGGG
ATAGGGGTAAGCGTGCTAACAGAAGAGAAGAAGATGACTCAAATTTTAAA
TGTTTTTGGTTGTTTTCGATGGAAAATGCCTTATTACAAATCCACAGACA
GAGTGCCTTCTTGCTGGGCAGGGATCGAAAGGTATTCAGATACAACTAAG
GAGTTGTCATTAAATATAATGAACCTTCAGAAGCAAGGAAGCCTAAAACA
AAATGGAGACTTTATCCATTCAAAGGAGACAAATCTTTACTTTTGGTGCC
GAAGGAAGGGATGAAAGTAGCACCAATGACAAAAAAGAAACCGTGTCGAA
GGAGGAACCAAATTATGAATTATCTGGGAAACTTACCGAATATACAAATA
CATACAATGGATTCACCTGGGGACAGTGAATACAAAAGACAAGTGGATGA
CAAGCTACATCGGAAGAAAGAAAGATCAGTTAAAACAAAAGAAATTGAGC
TAAAACACGACAAGCGTTATCAGAGAGATAAACATCGTTCAAAGGATGAA
AGAAGTAGAGATACAATTTCTGGCGATGACAGTAGAAAAAAACATGAACT
AGAACAGGATTTGAAGAGGACTCACAATAAAGAACATCGTAAACATGATA
ATGAATGGGAGCACAAACAGCGGCTTTCCCACTCAGATTCTAATGAGAAG
CATTCAGGGCATGATCATGATCACAATCATTCTGATAAAAAACATGACAT
TAAAATTAAAAAGGAACCCTCAGGGTGGGATGATGAAAAGCCACGTCCTG
ACCAAACAGAAAATAAACGTAGACAAGAAGAAGATAGGGATAGAGACCGT
GAAAAAAGGGATAGAAACAGACATAATAATAGGGATAGAGACGGACATGA
TGTGCATAGAGATAGAAACTCACGCGATAATAGAGATAATCAGAATAGAA
ATGATTCTAATAGACAAAGACATTCAAACCGTGAATGGGATAGGGGTAAG
CGTGCTAACAGAAGAGAAGAAGATGACTCAAATTTTAAATGTTTTTGGTT
GTTTTCGATGGAAAATGCCTTATTACAAATCCACAGACAGAGTGCCTTCT
TGCTGGGCAGGGATCGAAAGGTATTCAGATACAACTAAGGAGTTGTCATT
AAATATAATGAACCTTCAGAAGCAAGGAAGCCTAAAACAAAATGGAGACT
TTATCCATTCAAAGGAGACAAATCTTTACTTTTGGTGCCGAAGGAAGGGA
TGAAAGTAGCACCAATGACAAAAAAGAAACCGTGTCGAAGGAGGAACCAA
ATTATGAATTATCTGGGAAACTTACCGAATATACAAATACATACAATGGA
TTCACCTGGGGACAGTGAATACAAAAGACAAGTGGATGACAAGCTACATC
GGAAGAAAGAAAGATCAGTTAAAACAAAAGAAATTGAGCTAAAACACGAC
AAGCGTTATCAGAGAGATAAACATCGTTCAAAGGATGAAAGAAGTAGAGA
TACAATTTCTGGCGATGACAGTAGAAAAAAACATGAACTAGAACAGGATT
TGAAGAGGACTCACAATAAAGAACATCGTAAACATGATAATGAATGGGAG
CACAAACAGCGGCTTTCCCACTCAGATTCTAATGAGAAGCATTCAGGGCA
TGATCATGATCACAATCATTCTGATAAAAAACATGACATTAAAATTAAAA
AGGAACCCTCAGGGTGGGATGATGAAAAGCCACGTCCTGACCAAACAGAA
AATAAACGTAGACAAGAAGAAGATAGGGATAGAGACCGTGAAAAAAGGGA
TAGAAACAGACATAATAATAGGGATAGAGACGGACATGATGTGCATAGAG
ATAGAAACTCACGCGATAATAGAGATAATCAGAATAGAAATGATTCTAAT
AGACAAAGACATTCAAACCGTGAATGGGATAGGGGTAAGCGTGCTAACAG
AAGAGAAGAAGATGACTCAAATTTTAAATGTTTTTGGTTGTTTTCGATGG
AAAATGCCTTATTACAAATCCACAGACAGAGTGCCTTCTTGCTGGGCAGG
GATCGAAAGGTATTCAGATACAACTAAGGAGTTGTCATTAAATATAATGA
ACCTTCAGAAGCAAGGAAGCCTAAAACAAAATGGAGACTTTATCCATTCA
AAGGAGACAAATCTTTACTTTTGGTGCCGAAGGAAGGGATGAAAGTAGCA
CCAATGACAAAAAAGAAACCGTGTCGAAGGAGGAACCAAATTATGAATTA
TCTGGGAAACTTACCGAATATACAAATACATACAATGGATTCACCTGGGG
ACAGTGAATACAAAAGACAAGTGGATGACAAGCTACATCGGAAGAAAGAA
AGATCAGTTAAAACAAAAGAAATTGAGCTAAAACACGACAAGCGTTATCA
GAGAGATAAACATCGTTCAAAGGATGAAAGAAGTAGAGATACAATTTCTG
GCGATGACAGTAGAAAAAAACATGAACTAGAACAGGATTTGAAGAGGACT
CACAATAAAGAACATCGTAAACATGATAATGAATGGGAGCACAAACAGCG
GCTTTCCCACTCAGATTCTAATGAGAAGCATTCAGGGCATGATCATGATC
ACAATCATTCTGATAAAAAACATGACATTAAAATTAAAAAGGAACCCTCA
GGGTGGGATGATGAAAAGCCACGTCCTGACCAAACAGAAAATAAACGTAG
ACAAGAAGAAGATAGGGATAGAGACCGTGAAAAAAGGGATAGAAACAGAC
ATAATAATAGGGATAGAGACGGACATGATGTGCATAGAGATAGAAACTCA
CGCGATAATAGAGATAATCAGAATAGAAATGATTCTAATAGACAAAGACA
TTCAAACCGTGAATGGGATAGGGGTAAGCGTGCTAACAGAAGAGAAGAAG
ATGACTCAAATTTTAAATGTTTTTGGTTGTTTTCGATGGAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032691XLOC_032691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051648-exon-scaffold_202-1575043694:688044..688418TCONS_00051648-exon-scaffold_202-1575043694:688044..688418Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1575043694:686397..687026TCONS_00051648-exon-scaffold_202-1575043694:686397..687026Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1575043694:686039..686156TCONS_00051648-exon-scaffold_202-1575043694:686039..686156Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1575043694:685653..685743TCONS_00051648-exon-scaffold_202-1575043694:685653..685743Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1575043694:684933..685014TCONS_00051648-exon-scaffold_202-1575043694:684933..685014Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1510915933:688044..688418TCONS_00051648-exon-scaffold_202-1510915933:688044..688418Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1510915933:686397..687026TCONS_00051648-exon-scaffold_202-1510915933:686397..687026Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1510915933:686039..686156TCONS_00051648-exon-scaffold_202-1510915933:686039..686156Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1510915933:685653..685743TCONS_00051648-exon-scaffold_202-1510915933:685653..685743Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1510915933:684933..685014TCONS_00051648-exon-scaffold_202-1510915933:684933..685014Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1491911889:688044..688418TCONS_00051648-exon-scaffold_202-1491911889:688044..688418Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1491911889:686397..687026TCONS_00051648-exon-scaffold_202-1491911889:686397..687026Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1491911889:686039..686156TCONS_00051648-exon-scaffold_202-1491911889:686039..686156Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1491911889:685653..685743TCONS_00051648-exon-scaffold_202-1491911889:685653..685743Clytia hemisphaericaexon
TCONS_00051648-exon-scaffold_202-1491911889:684933..685014TCONS_00051648-exon-scaffold_202-1491911889:684933..685014Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051648-proteinTCONS_00051648-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:684933..688418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.3467	25.9049	13.2139	11.3259	30.4571	26.6578	22.4887	21.5987	11.7208	11.3137	8.01603	8.99289	8.33524	8.84645	8.70867	7.09102	10.3223	8.85703	2.67871	4.84355	6.73958	7.06823	28.47	21.9754	18.332	16.8688	5.74839	3.34955	15.9138	18.6136
Blast
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BLAST of TCONS_00051648 vs. Swiss-Prot (Human)
Match: SNIP1 (Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.908e-27
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 2 
Query: 1040 NDKKETVSKEEPNYELSGKLTEYTNTYNGVVIKYNEPSEARKPKTKWRLYPFKGDKSLPLLQIHRQSAFLLGRDRKV 1270
            N +KE  +KE+P++ELSG L E TNT+ GVVIKY+EP EAR PK +WRLYPFK D+ LP++ IHRQSA+LLGR R++
Sbjct:  213 NKEKEVPAKEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRI 289
The following BLAST results are available for this feature:
BLAST of TCONS_00051648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNIP13.908e-2763.64Smad nuclear-interacting protein 1 OS=Homo sapiens... [more]
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