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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051634 ID=TCONS_00051634|Name=TCONS_00051634|organism=Clytia hemisphaerica|type=transcript|length=914bp
GTGGTTGCAGACGGTTGATGATCAGTTAATATCCAACAGAGAGCCcatta
aagatttaaaagacTTTGTATCTGATTCTGAAGATTCTATACAGATAGCA
GAGAATCATCCTTGCATTACAATAAATATATATTTGCCGAATGAAGATCG
TGTTATACGCTGGGATAAAAATACGGTCAAACATATTGAAAGACAGTCGA
TGGCAACTCTTAGGTACTATGTTCTGAATTATGAGCCAAATGAACagatt
tttgatttcattaaacGAATTCTAGTTGAAGAATCGTCAGCGCTGGCAAA
TATTGACTCTATCAAACAAACTTTTGTATATGTTAGACTCAGCCATAAAA
CGGAATACCCCCTGCTTCAAAGTGATTCTTATAAGATGCTACGAAAGCTT
CAAGATGATAAAAATTGGGCTGTAATCATATTTTGTGTGAAGGACTTATG
TCCTTCAAAAATGTGGATGCCACTTCAACACTTAATATTTCTGGATGATA
CACCCAGCAAATTAATTCGCCATCAGAATCTAGCAGATTTGGCTAATCTC
ATAAAGAACCCTGATTATAACAGATATCAATTTTATCAATCGCTACCAAT
GTCTAAACATCTCTTCGATGAAACTTGTTTGAAAGATATTAAGAAAGTTC
ACATTGGAATTGGTATTTTTAATGATGCTTATATACCTCCGGCTATGTGG
GTCACAAATAATGTCAATAAAAGACGAGAAAGGTTAAATAAGGAACCATT
AGAGATAATATTTTATCTAAATATCTACAGATATCCACCCAATATGTATA
CATTGTTGATTGAGAAACTCCCATTCCATATTAGATTTACATATAATTAC
GAAGGTTCATTGGCAAGAAGTAATACAAAAGAGAATTTCTATGCTCGTGT
TGTTGACGACTCTG Run BLAST on NCBI transcript from alignment at scaffold_202:547581..550500- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051634 ID=TCONS_00051634|Name=TCONS_00051634|organism=Clytia hemisphaerica|type=transcript|length=2920bp|location=Sequence derived from alignment at scaffold_202:547581..550500- (Clytia hemisphaerica)
GTGGTTGCAGACGGTTGATGATCAGTTAATATCCAACAGAGAGCCCATTA
AAGATTTAAAAGACTTTGTATCTGATTCTGAAGATTCTATACGTAAGCTT
TTGATTTAATTGTTTTGTTTGTTGTTGTTTGGATAATTGTTTGCCTAGAT
ACCAACCCTGACTTTTAATGCCTTTTAGTGACCCGTAGCGCCCGTAGCGC
AGTGATAGAGTATTCGGCTACGATGCGCAACAATCATGGTCAAAATCTAT
TGAGAATTTAGCTTATTTCCTCGTTTTTCGAAATTTGGAGTTCGGGCGAG
AAAGTCGCTTTTGGGCTAATTGATAAATTTATTCGAGTATTTCAATTCGG
CAGGGGTTTATAGACTTCCAGGCTATATTCCAAGCCCTGATGGACCATTC
TTGGACTTTTGAATCCTTAGATCCTAAGGTCCTAAGACTTAAGTCTAGTG
TTAAAACTCTGCCCTTCCAAACTAATTTAGAGCGCTTCCAAATCATTTGT
GGTTATAAGATTTCGTTGGAATTTCCCTTTTTTCTCAAATATTACGACCA
TGATTAAAGGTCATACAAAATGGTACTTGATGTCTCTTTATAGCTTGATA
CTCAGCAATTAAGAGAAGGATCAAGGGTAAGTGGAGCAATCCAGGGAGAA
AGAGTGGCGCCCTACCCTAATTTCGGGTAGATAGCAATCATTGAGTATAA
AGCCCGAAGGGCTAGAAAAGAATCATCTCTAGCCTGCCCCAGGCAAGAAA
AAATGAAGCCACTTACTTAATATTTCCCATCCAGAACGCGTCGTACTCAT
GATGACGGATTGTATCTATCGATTCCTTTGTTTTTGAGAACTGCACTGAA
ATTTAGCGATAGATTTTACTTTAAATCCGGCGTTTATGTAGAAATCACGC
GTGGGCTTTCTGGATGAGAAATAAGTGGCTTTATTTCCCATCCAGGAGTC
TCAAGTTTAGACCTTCGGGCTTGGAAGTCAATGATAGCAATCGAAAAAGG
AGCCTTCGGGGCCTTCAGGTCCCCTCCGACTGCAGTCGCAGACTTAAATG
CCCAAACCAAACTGCGAGAGTTAAAGAGACTTGAGAAAGTTTTTGGCGAC
TTTAAATATCTATCACTTATCATTATTTCGAATAAAACCATGTTATTAAC
TCAATCAAAAAATTTACAGTGGGAAATTCGAATTTAGCGCTGTCCTCACT
TACTAAAATAAAAACCAAATTTCGGAACTTGCGCTTTCTCTAAGAAAGGA
CCAGTGAAAGAATAGCCGAATTTGATTGGCTGTGTTTCCAACCGTTAGTA
AGATCTGGGAAATTCAAACTATCAGCCCTAACAATGCTATATATTTTATC
ATCAGTATATAAAATAAGAAATCATAAACCCCTGGGTCACTCACCCATCG
CTCTTTCATTGTAACATGCAAGGCATGATGACCATTGAATTTTTTTTATA
AAAGACTTGTTAAAATGAGATTCTTATCTCCATTTTCCTTATTTTCTAAT
TCTGACAATCAGTATAAATGGTTAATTATGTAATTTACATCCTGCAATAA
ATTATACACGTTTTTTTATAAGAACATAAAATTTTCGAAGCCTCCGGATG
TTCTTAACTTTTTGAGTTTTAAGCCAAAAATGTTCTTAACATGTTCTTAT
TTTCACCATTTTGTGAGTATATTTTTTGCCTTTTTTCCTAAGAAATTGGG
TGTTTTAAGAGTCTGCAAAGCCTTAAAATGTTCTTAACATGCTCTTAACA
TTTTGTTCATCGAAGCTTTATGTTCTTATATAGTTTGTTCTTATAAAAAA
AACGTGTATAAGATTAATGGTTAACTTAGAAAAAAGATTATGTTAGTGAG
GGAATAGATGCTCTTTCTCTTTTTTAATCATTACACAGTAAACTCTGTGT
ACTTATCTAGAAAGCGTATTAAAACAATGTTCAATATTTTTGTACTGGTC
CTCTTAAGTTTTTATTCTGGAACTGAGATATTTGTTGGGACGACTGATTT
TCGGCTATTAAGCTGTACTCAAAGTAGAAATGTCACCATTGTAATTGACT
GGTTTGACGGAGATTATATTGATATTTTCTTTGATTATTATTTACCAGAG
ATAGCAGAGAATCATCCTTGCATTACAATAAATATATATTTGCCGAATGA
AGATCGTGTTATACGCTGGGATAAAAATACGGTCAAACATATTGAAAGAC
AGTCGATGGCAACTCTTAGGTACTATGTTCTGAATTATGAGCCAAATGAA
CAGATTTTTGATTTCATTAAACGAATTCTAGTTGAAGAATCGTCAGCGCT
GGCAAATATTGACTCTATCAAACAAACTTTTGTATATGTTAGACTCAGCC
ATAAAACGGAATACCCCCTGCTTCAAAGTGATTCTTATAAGATGCTACGA
AAGCTTCAAGATGATAAAAATTGGGCTGTAATCATATTTTGTGTGAAGGA
CTTATGTCCTTCAAAAATGTGGATGCCACTTCAACACTTAATATTTCTGG
ATGATACACCCAGCAAATTAATTCGCCATCAGAATCTAGCAGATTTGGCT
AATCTCATAAAGAACCCTGATTATAACAGATATCAATTTTATCAATCGCT
ACCAATGTCTAAACATCTCTTCGATGAAACTTGTTTGAAAGATATTAAGA
AAGTTCACATTGGAATTGGTATTTTTAATGATGCTTATATACCTCCGGCT
ATGTGGGTCACAAATAATGTCAATAAAAGACGAGAAAGGTTAAATAAGGA
ACCATTAGAGATAATATTTTATCTAAATATCTACAGATATCCACCCAATA
TGTATACATTGTTGATTGAGAAACTCCCATTCCATATTAGATTTACATAT
AATTACGAAGGTTCATTGGCAAGAAGTAATACAAAAGAGAATTTCTATGC
TCGTGTTGTTGACGACTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051634-exon-scaffold_202-1575043694:550409..550500 | TCONS_00051634-exon-scaffold_202-1575043694:550409..550500 | Clytia hemisphaerica | exon |
| TCONS_00051634-exon-scaffold_202-1575043694:547581..548402 | TCONS_00051634-exon-scaffold_202-1575043694:547581..548402 | Clytia hemisphaerica | exon |
| TCONS_00051634-exon-scaffold_202-1510915933:550409..550500 | TCONS_00051634-exon-scaffold_202-1510915933:550409..550500 | Clytia hemisphaerica | exon |
| TCONS_00051634-exon-scaffold_202-1510915933:547581..548402 | TCONS_00051634-exon-scaffold_202-1510915933:547581..548402 | Clytia hemisphaerica | exon |
| TCONS_00051634-exon-scaffold_202-1491911889:550409..550500 | TCONS_00051634-exon-scaffold_202-1491911889:550409..550500 | Clytia hemisphaerica | exon |
| TCONS_00051634-exon-scaffold_202-1491911889:547581..548402 | TCONS_00051634-exon-scaffold_202-1491911889:547581..548402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:547581..550500 - |
Blast
The following BLAST results are available for this feature:
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