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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051624 ID=TCONS_00051624|Name=TCONS_00051624|organism=Clytia hemisphaerica|type=transcript|length=4941bpRun BLAST on NCBI protein sequence of TCONS_00051624-protein >TCONS_00051624-protein ID=TCONS_00051624-protein|Name=TCONS_00051624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp MNNLLSAKGTKKFIRHLAKTQPTAFNTLVATAGAYGVYYAYAKLKNRDNNRun BLAST on NCBI transcript from alignment at scaffold_202:425506..453744- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051624 ID=TCONS_00051624|Name=TCONS_00051624|organism=Clytia hemisphaerica|type=transcript|length=28239bp|location=Sequence derived from alignment at scaffold_202:425506..453744- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_202:425506..453744- >TCONS_00051624 ID=TCONS_00051624|Name=TCONS_00051624|organism=Clytia hemisphaerica|type=CDS|length=21990bp|location=Sequence derived from alignment at scaffold_202:425506..453744- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051624 vs. Swiss-Prot (Human)
Match: ABCD2 (ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1) HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0 Identity = 385/660 (58.33%), Postives = 497/660 (75.30%), Query Frame = 2
Query: 254 INKEYYEKLMQIIKIILPGVWTKEFAFLSAHTIALICRAFLSIYVATLDGKLAKCIVEKKLMRFLYLLTQWIGIAVPATFINSLLKYLEGKLSLAFRTQLVRHAYKLYFDKQTYYKVGNLDSRLSSPDESLTEDLRLFCDSIAHLYSHMTKPILDLLLVCMTLSKMSNKRGQSWIQPISIASLVTVTTGHILKMSSPAFGKLVSEESSRRGTLRTVHSRVITNSEEIAFYGGHKVEHNLLQKTYQSLAGQINLILRKKLWYVMLEQFLMKYVWSASGLIMVSLPIMLGKDVS----GSMSEQISERSQAFTTSRNLLLSGADAVERIMTSFKEIIELAGYTERVHSMLSVFEDIHKEHYIR---LPASKSFSTVEEHLEDASEDHIVFSHGQVVPLNSLPRTTPTWTDGDIVLRQVPIIAPSGDVVCPSLSIKISPGSHFLITGPNGCGKSSLFRILSGLWPVYGGGQLSIPYPSDTFYIPQRPYMTLGTLRDQVIYPDSIGEMKRKGWTDETLEGILEQVYLKYVIEREGGFDTVSDWMDVLSGGEKQRMGMARMFYHKPKFALLDECTSAVSIDVEGKMYQAAKDSGITLLTITHRPSLWKFHSHLLKFDGEGGWSIEEMNANTRLTLNEEKERLEAQLADVPKAQERLNELCAILGE 2212
+N +++++L+++ KI+ P + T E +L H++ALI R FLSIYVA LDGK+ K IVEKK F+ L +W+ IA+PATF+NS ++YLE KL+LAFRT+LV HAY+ YF QTYYKV N+D RL++PD+SLTED+ +F S+AHLYS++TKPILD++L TL + + RG S I P +A LV T +LK SP FGKLV+EE+ R+G LR VHSR+I N EEIAFY GHKVE LQK+Y++LA Q+NLIL K+LWY+M+EQFLMKYVWS+SGLIMV++PI+ + G +SER++AFTT+RNLL SGADA+ERIM+S+KE+ ELAGYT RV++M VF+++ + Y R + S+S S +E D + G+V+ + D I+ VPII P+G+VV L+ K+ G H LITGPNGCGKSSLFRILSGLWPVY G L P P FYIPQRPYM+LG+LRDQVIYPDS+ +M KG+TD+ LE IL V+L ++++REGG+D V DW DVLSGGEKQRMGMARMFYHKPK+ALLDECTSAVSIDVEGK++QAAK +GI+LL+ITHRPSLWK+H+HLL+FDGEGGW E+++ RLTL+EEK++LE+QLA +PK Q+RLNELC ILGE
Sbjct: 80 VNADFFKQLLELRKILFPKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLALAFRTRLVDHAYETYFTNQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVMLTSYTLIQTATSRGASPIGPTLLAGLVVYATAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKSYKALADQMNLILSKRLWYIMIEQFLMKYVWSSSGLIMVAIPIITATGFADGEDGQKQVMVSERTEAFTTARNLLASGADAIERIMSSYKEVTELAGYTARVYNMFWVFDEVKRGIYKRTAVIQESESHSKNGAKVELPLSDTLAIK-GKVIDV-----------DHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVY-EGVLYKPPPQHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHDKGYTDQDLERILHNVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITHRPSLWKYHTHLLQFDGEGGWRFEQLDTAIRLTLSEEKQKLESQLAGIPKMQQRLNELCKILGE 726 The following BLAST results are available for this feature:
BLAST of TCONS_00051624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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