TCONS_00051594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051594
Unique NameTCONS_00051594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051594 ID=TCONS_00051594|Name=TCONS_00051594|organism=Clytia hemisphaerica|type=transcript|length=1533bp
AAAATCTTCAAATCAATAAATATGGAATGTTTCCAGCGATTGACCGACGT
TGCAACCGTCCAGGACAATCAGTCAACAAAATCTTCGTTATCAACGATCA
ATGGATCCGACCTGACAGCCTTAGGCTTAGGGTTGAAAATGAATGTTCCA
GGAtatatttataataattacttggaaaaagaaaataaagaaaaaaaaac
agaaaacagaaaacgaaaaaaaaataagtCATCAAAAGTTGGAGATCCTG
AAGTGAGAAGAGCAGTTAAATCcatgaaaaaatctttgaaaaatGCCGAG
GTACCTCTGAATGAAAAGAAATCTAAATTCAAACGGCTAATTTTCCACAA
TTCCGATAGCGAGGATGAAGAAACCGAAGAAACTGTCGATTTTAATAGCA
CGAACGTCAAAATAAACATTGCCACGCCTAAACGCTACATCCCTAACTTT
TCTAAAACGCACAAAACGACATCCGCAACACACAAGGCACCATCCTCTAC
AACCTCGAATCTTTCTAAACCAACACAATCCGAATCTGATCATGATACCG
AATCCGACAGTGAGTCTGAGCCTGACGTTCCCATGATCGAGGAAGAGCAA
CCAAAAGGTCTTGGGCAGTTTGCTTCATGGAGCAAGTCTATCACCCTCGT
TTTCATCAATGAATACGAAAAGAATTACGAGAATTTTCATACAGGACGAT
ACCGAAAGAAAGAAGTTTGGGAAATGATCCACCAGGGAATAAAAAGAACG
ATTAAATCTGGAAATCCGGTACCATCAGCTACACAATGCAAAACAAAGTG
GCGAACACTGACAAAAGCGTACAATGGGGTGATGATCAACAATCGGAAAC
AGAGTGGGGCGACGAGAGTCACTTGTAAATTCTACGACGAGCTTAATCAA
ATACTGAGCAGAAAACCAAGCACCAAACCAGTGGATGAAATTGGAAACGT
AGCGCCCTTCAGAAACACTGATTCATTAGAAAACTTAACCAATGATGCGG
TGGTACCTACAGAGGAACAATCTGTTGAACAAAGAAGCGCGGAACAGCAT
CACGAAAGGccgaagaaaagaaaatacacTTCTACAGTAGAGTCATCGAC
GCGTTTTTTGACGAACTGGCTTGACCAATGgacaacaaaagaagaaaaaa
aagaaaaggaaagagAAGAGAAACTAGAGAAACAGttcgaaaaattagaa
aaactagcagaagaaaaaaacaaaattttgaaagggcTACTACAAGCAAT
AACGAACCAAAAAGACAAGGAGTTACCTTCGGATGAGGACCATTGGGATG
ATTGATAATATCATGATTTATTAAACATgtgtataattttttgaaaatat
ttgttcCTTTCGAAGcatgattttattttattccaaTAAGAGTTGTAAGT
TATttcttaaataattttttatatttacaatATGTGAATTAACAAGTTTA
ATTGTCATTAAAGAATAAGAATAAATAAGTTACAATAGTTAATAATCATA
TTGTGAAGAAATTATATTTCTCTAACATCgtac
Run BLAST on NCBI

protein sequence of TCONS_00051594-protein

>TCONS_00051594-protein ID=TCONS_00051594-protein|Name=TCONS_00051594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
KIFKSINMECFQRLTDVATVQDNQSTKSSLSTINGSDLTALGLGLKMNVP
GYIYNNYLEKENKEKKTENRKRKKNKSSKVGDPEVRRAVKSMKKSLKNAE
VPLNEKKSKFKRLIFHNSDSEDEETEETVDFNSTNVKINIATPKRYIPNF
SKTHKTTSATHKAPSSTTSNLSKPTQSESDHDTESDSESEPDVPMIEEEQ
PKGLGQFASWSKSITLVFINEYEKNYENFHTGRYRKKEVWEMIHQGIKRT
IKSGNPVPSATQCKTKWRTLTKAYNGVMINNRKQSGATRVTCKFYDELNQ
ILSRKPSTKPVDEIGNVAPFRNTDSLENLTNDAVVPTEEQSVEQRSAEQH
HERPKKRKYTSTVESSTRFLTNWLDQWTTKEEKKEKEREEKLEKQFEKLE
KLAEEKNKILKGLLQAITNQKDKELPSDEDHWDD
Run BLAST on NCBI

transcript from alignment at scaffold_202:88301..90164-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051594 ID=TCONS_00051594|Name=TCONS_00051594|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at scaffold_202:88301..90164- (Clytia hemisphaerica)
AAAATCTTCAAATCAATAAATATGGAATGTTTCCAGCGATTGACCGACGT
TGCAACCGTCCAGGACAATCAGTCAACAAAATCTTCGTTATCAACGATCA
ATGGATCCGACCTGACAGCCTTAGGCTTAGGGTTGAAAATGAATGTTCCA
GGATATATTTATAATAATTACTTGGAAAAAGAAAATAAAGAAAAAAAAAC
AGAAAACAGAAAACGAAAAAAAAATAAGTCATCAAAAGTTGGAGATCCTG
AAGTGAGAAGAGCAGTTAAATCCATGAAAAAATCTTTGAAAAATGTGAGT
ATTTGGAATTTTTTTATAATTGATATTGACAATTTTTTTAAAAGAACAAT
TCTTATCGAATTCTGGAGGATTAATTTGCCCTGTATAAGATCCTAAAATG
GCCGTTAAATAATGTAACTATATCTTCTTGTTTTAGGCCGAGGTACCTCT
GAATGAAAAGAAATCTAAATTCAAACGGCTAATTTTCCACAATTCCGATA
GCGAGGATGAAGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACGTC
AAAATAAACATTGCCACGCCTAAACGCTACATCCCTAACTTTTCTAAAAC
GCACAAAACGACATCCGCAACACACAAGGCACCATCCTCTACAACCTCGA
ATCTTTCTAAACCAACACAATCCGAATCTGATCATGATACCGAATCCGAC
AGTGAGTCTGAGCCTGACGTTCCCATGATCGAGGAAGAGCAACCAAAAGG
TCTTGGGCAGTTTGCTTCATGGAGCAAGTCTATCACCCTCGTTTTCATCA
ATGAATACGAAAAGAATTACGAGAATTTTCATACAGGACGATACCGAAAG
AAAGAAGTTTGGGAAATGATCCACCAGGGAATAAAAAGAACGATTAAATC
TGGAAATCCGGTACCATCAGCTACACAATGCAAAACAAAGTGGCGAACAC
TGACAAAAGCGTACAATGGGTAATTTTATTTACTTATTTACTTATTATCT
TAGGGGCGCTTAGGGGTATTAAGGCAAGTGGTAAGAAAAATGCTCACCTC
CCAAGTTTAATTCTACTCTAGGGAAATTCCGAAAATCAGCCAAATACATT
ATAAAAAAGCATGTGTCAGTATTATTCGTTAAATTTAGGATATTTATGTG
TCTTTTAGGGTGATGATCAACAATCGGAAACAGAGTGGGGCGACGAGAGT
CACTTGTAAATTCTACGACGAGCTTAATCAAATACTGAGCAGAAAACCAA
GCACCAAACCAGTGGATGAAATTGGAAACGTAGCGCCCTTCAGAAACACT
GATTCATTAGAAAACTTAACCAATGATGCGGTGGTACCTACAGAGGAACA
ATCTGTTGAACAAAGAAGCGCGGAACAGCATCACGAAAGGCCGAAGAAAA
GAAAATACACTTCTACAGTAGAGTCATCGACGCGTTTTTTGACGAACTGG
CTTGACCAATGGACAACAAAAGAAGAAAAAAAAGAAAAGGAAAGAGAAGA
GAAACTAGAGAAACAGTTCGAAAAATTAGAAAAACTAGCAGAAGAAAAAA
ACAAAATTTTGAAAGGGCTACTACAAGCAATAACGAACCAAAAAGACAAG
GAGTTACCTTCGGATGAGGACCATTGGGATGATTGATAATATCATGATTT
ATTAAACATGTGTATAATTTTTTGAAAATATTTGTTCCTTTCGAAGCATG
ATTTTATTTTATTCCAATAAGAGTTGTAAGTTATTTCTTAAATAATTTTT
TATATTTACAATATGTGAATTAACAAGTTTAATTGTCATTAAAGAATAAG
AATAAATAAGTTACAATAGTTAATAATCATATTGTGAAGAAATTATATTT
CTCTAACATCGTAC

Coding sequence (CDS) from alignment at scaffold_202:88301..90164-

>TCONS_00051594 ID=TCONS_00051594|Name=TCONS_00051594|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_202:88301..90164- (Clytia hemisphaerica)
GGTGATGATCAACAATCGGAAACAGAGTGGGGCGACGAGAGTCACTTGTA
AATTCTACGACGAGCTTAATCAAATACTGAGCAGAAAACCAAGCACCAAA
CCAGTGGATGAAATTGGAAACGTAGCGCCCTTCAGAAACACTGATTCATT
AGAAAACTTAACCAATGATGCGGTGGTACCTACAGAGGAACAATCTGTTG
AACAAAGAAGCGCGGAACAGCATCACGAAAGGCCGAAGAAAAGAAAATAC
ACTTCTACAGTAGAGTCATCGACGCGTTTTTTGACGAACTGGCTTGACCA
ATGGACAACAAAAGAAGAAAAAAAAGAAAAGGAAAGAGAAGAGAAACTAG
AGAAACAGTTCGAAAAATTAGAAAAACTAGCAGAAGAAAAAAACAAAATT
TTGAAAGGGCTACTACAAGCAATAACGAACCAAAAAGACAAGGAGTTACC
TTCGGATGAGGACCATTGGGATGATTGAGCCGAGGTACCTCTGAATGAAA
AGAAATCTAAATTCAAACGGCTAATTTTCCACAATTCCGATAGCGAGGAT
GAAGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACGTCAAAATAAA
CATTGCCACGCCTAAACGCTACATCCCTAACTTTTCTAAAACGCACAAAA
CGACATCCGCAACACACAAGGCACCATCCTCTACAACCTCGAATCTTTCT
AAACCAACACAATCCGAATCTGATCATGATACCGAATCCGACAGTGAGTC
TGAGCCTGACGTTCCCATGATCGAGGAAGAGCAACCAAAAGGTCTTGGGC
AGTTTGCTTCATGGAGCAAGTCTATCACCCTCGTTTTCATCAATGAATAC
GAAAAGAATTACGAGAATTTTCATACAGGACGATACCGAAAGAAAGAAGT
TTGGGAAATGATCCACCAGGGAATAAAAAGAACGATTAAATCTGGAAATC
CGGTACCATCAGCTACACAATGCAAAACAAAGTGGCGAACACTGACAAAA
GCGTACAATGGAAAATCTTCAAATCAATAAATATGGAATGTTTCCAGCGA
TTGACCGACGTTGCAACCGTCCAGGACAATCAGTCAACAAAATCTTCGTT
ATCAACGATCAATGGATCCGACCTGACAGCCTTAGGCTTAGGGTTGAAAA
TGAATGTTCCAGGATATATTTATAATAATTACTTGGAAAAAGAAAATAAA
GAAAAAAAAACAGAAAACAGAAAACGAAAAAAAAATAAGTCATCAAAAGT
TGGAGATCCTGAAGTGAGAAGAGCAGTTAAATCCATGAAAAAATCTTTGA
AAAATGGTGATGATCAACAATCGGAAACAGAGTGGGGCGACGAGAGTCAC
TTGTAAATTCTACGACGAGCTTAATCAAATACTGAGCAGAAAACCAAGCA
CCAAACCAGTGGATGAAATTGGAAACGTAGCGCCCTTCAGAAACACTGAT
TCATTAGAAAACTTAACCAATGATGCGGTGGTACCTACAGAGGAACAATC
TGTTGAACAAAGAAGCGCGGAACAGCATCACGAAAGGCCGAAGAAAAGAA
AATACACTTCTACAGTAGAGTCATCGACGCGTTTTTTGACGAACTGGCTT
GACCAATGGACAACAAAAGAAGAAAAAAAAGAAAAGGAAAGAGAAGAGAA
ACTAGAGAAACAGTTCGAAAAATTAGAAAAACTAGCAGAAGAAAAAAACA
AAATTTTGAAAGGGCTACTACAAGCAATAACGAACCAAAAAGACAAGGAG
TTACCTTCGGATGAGGACCATTGGGATGATTGAGCCGAGGTACCTCTGAA
TGAAAAGAAATCTAAATTCAAACGGCTAATTTTCCACAATTCCGATAGCG
AGGATGAAGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACGTCAAA
ATAAACATTGCCACGCCTAAACGCTACATCCCTAACTTTTCTAAAACGCA
CAAAACGACATCCGCAACACACAAGGCACCATCCTCTACAACCTCGAATC
TTTCTAAACCAACACAATCCGAATCTGATCATGATACCGAATCCGACAGT
GAGTCTGAGCCTGACGTTCCCATGATCGAGGAAGAGCAACCAAAAGGTCT
TGGGCAGTTTGCTTCATGGAGCAAGTCTATCACCCTCGTTTTCATCAATG
AATACGAAAAGAATTACGAGAATTTTCATACAGGACGATACCGAAAGAAA
GAAGTTTGGGAAATGATCCACCAGGGAATAAAAAGAACGATTAAATCTGG
AAATCCGGTACCATCAGCTACACAATGCAAAACAAAGTGGCGAACACTGA
CAAAAGCGTACAATGGAAAATCTTCAAATCAATAAATATGGAATGTTTCC
AGCGATTGACCGACGTTGCAACCGTCCAGGACAATCAGTCAACAAAATCT
TCGTTATCAACGATCAATGGATCCGACCTGACAGCCTTAGGCTTAGGGTT
GAAAATGAATGTTCCAGGATATATTTATAATAATTACTTGGAAAAAGAAA
ATAAAGAAAAAAAAACAGAAAACAGAAAACGAAAAAAAAATAAGTCATCA
AAAGTTGGAGATCCTGAAGTGAGAAGAGCAGTTAAATCCATGAAAAAATC
TTTGAAAAATGGTGATGATCAACAATCGGAAACAGAGTGGGGCGACGAGA
GTCACTTGTAAATTCTACGACGAGCTTAATCAAATACTGAGCAGAAAACC
AAGCACCAAACCAGTGGATGAAATTGGAAACGTAGCGCCCTTCAGAAACA
CTGATTCATTAGAAAACTTAACCAATGATGCGGTGGTACCTACAGAGGAA
CAATCTGTTGAACAAAGAAGCGCGGAACAGCATCACGAAAGGCCGAAGAA
AAGAAAATACACTTCTACAGTAGAGTCATCGACGCGTTTTTTGACGAACT
GGCTTGACCAATGGACAACAAAAGAAGAAAAAAAAGAAAAGGAAAGAGAA
GAGAAACTAGAGAAACAGTTCGAAAAATTAGAAAAACTAGCAGAAGAAAA
AAACAAAATTTTGAAAGGGCTACTACAAGCAATAACGAACCAAAAAGACA
AGGAGTTACCTTCGGATGAGGACCATTGGGATGATTGAGCCGAGGTACCT
CTGAATGAAAAGAAATCTAAATTCAAACGGCTAATTTTCCACAATTCCGA
TAGCGAGGATGAAGAAACCGAAGAAACTGTCGATTTTAATAGCACGAACG
TCAAAATAAACATTGCCACGCCTAAACGCTACATCCCTAACTTTTCTAAA
ACGCACAAAACGACATCCGCAACACACAAGGCACCATCCTCTACAACCTC
GAATCTTTCTAAACCAACACAATCCGAATCTGATCATGATACCGAATCCG
ACAGTGAGTCTGAGCCTGACGTTCCCATGATCGAGGAAGAGCAACCAAAA
GGTCTTGGGCAGTTTGCTTCATGGAGCAAGTCTATCACCCTCGTTTTCAT
CAATGAATACGAAAAGAATTACGAGAATTTTCATACAGGACGATACCGAA
AGAAAGAAGTTTGGGAAATGATCCACCAGGGAATAAAAAGAACGATTAAA
TCTGGAAATCCGGTACCATCAGCTACACAATGCAAAACAAAGTGGCGAAC
ACTGACAAAAGCGTACAATGGAAAATCTTCAAATCAATAAATATGGAATG
TTTCCAGCGATTGACCGACGTTGCAACCGTCCAGGACAATCAGTCAACAA
AATCTTCGTTATCAACGATCAATGGATCCGACCTGACAGCCTTAGGCTTA
GGGTTGAAAATGAATGTTCCAGGATATATTTATAATAATTACTTGGAAAA
AGAAAATAAAGAAAAAAAAACAGAAAACAGAAAACGAAAAAAAAATAAGT
CATCAAAAGTTGGAGATCCTGAAGTGAGAAGAGCAGTTAAATCCATGAAA
AAATCTTTGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032674XLOC_032674Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051594-proteinTCONS_00051594-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051594-exon-scaffold_202-1575043694:89871..90164TCONS_00051594-exon-scaffold_202-1575043694:89871..90164Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1575043694:89196..89728TCONS_00051594-exon-scaffold_202-1575043694:89196..89728Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1575043694:88301..89006TCONS_00051594-exon-scaffold_202-1575043694:88301..89006Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1510915933:89871..90164TCONS_00051594-exon-scaffold_202-1510915933:89871..90164Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1510915933:89196..89728TCONS_00051594-exon-scaffold_202-1510915933:89196..89728Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1510915933:88301..89006TCONS_00051594-exon-scaffold_202-1510915933:88301..89006Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1491911889:89871..90164TCONS_00051594-exon-scaffold_202-1491911889:89871..90164Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1491911889:89196..89728TCONS_00051594-exon-scaffold_202-1491911889:89196..89728Clytia hemisphaericaexon
TCONS_00051594-exon-scaffold_202-1491911889:88301..89006TCONS_00051594-exon-scaffold_202-1491911889:88301..89006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:88301..90164 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0535918	0.0996715	0	0.148413	0.385157	0.392903	0.745142	0.516575	0.0815533	0.111977	0.325922	0.158648	0.142719	0.289948	0.159586	0.159598	0.17196	0.138163	0.18768	0.222099	0	0.0977051	0.153618	0.167593	1.92911	1.10667	0.100895	0.0530557	0.122992	0.108582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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