|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051590 ID=TCONS_00051590|Name=TCONS_00051590|organism=Clytia hemisphaerica|type=transcript|length=4902bpRun BLAST on NCBI protein sequence of TCONS_00051590-protein >TCONS_00051590-protein ID=TCONS_00051590-protein|Name=TCONS_00051590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=843bp MRYGHTLVEYGGSLFLFGGTVYKNEDFAHPSISNDLLEYKTNTNSWESHTRun BLAST on NCBI transcript from alignment at scaffold_202:1248796..1286591+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051590 ID=TCONS_00051590|Name=TCONS_00051590|organism=Clytia hemisphaerica|type=transcript|length=37796bp|location=Sequence derived from alignment at scaffold_202:1248796..1286591+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_202:1248796..1286591+ >TCONS_00051590 ID=TCONS_00051590|Name=TCONS_00051590|organism=Clytia hemisphaerica|type=CDS|length=55704bp|location=Sequence derived from alignment at scaffold_202:1248796..1286591+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051590 vs. Swiss-Prot (Human)
Match: ATRN (Attractin OS=Homo sapiens GN=ATRN PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 4.850e-68 Identity = 119/410 (29.02%), Postives = 201/410 (49.02%), Query Frame = 1
Query: 1039 WSPVKTYSSYSSEEMRYGHTLVEYGGSLFLFGGTVYKNEDFAHPSISNDLLEYKTNTNSWESHTSDA---IPVTGHASVVI---QGHIYSF--FGYNEKYILFNRVQKLNLSQNKKTWTIVDTKGALIKGRSGHTATYDSVSNTVFIFGGYASSAITE---DNELLLFNVAEESWSIGASAPSSRVLHAAGIVGNNFVIFGGNS--NVRSHRVSSCFNNDLLVYSIDCNKWIQKSFPLLDEE-KRYGHSAVIVNNSIHVFGGFNGQFLNDVFEIAIGDDCGGYLLKGECLKADPLSGCVWHIQSKKCIRFQQNIPTSAIE---KPECEGASI----NCNLYNTCTRCLGYT-QCDWLKDECFERN--------PISPYKD-PTTCPLYETAVCSTFSNCYSCHQQDNCTW 2175
W P+ S ++ +RYGH+L Y ++++GG + + ++N+L + + SW T A V GH++ ++ G + FG+ Y + VQ+ +L +N TW+I+ T+GAL++G GH++ YD + +++ GGY + + + ++L ++V + W+I + R LH A IV ++FGGN+ + + CF++D + Y I C++W P L + R+GHSAV+ N++++VFGGFN L+D+ + + C + + CL A P CVW+ S +CI + + T E K EC C+ + C C T C W D C RN I Y++ P P+Y C+ ++C SC NC W
Sbjct: 379 WLPLN--RSVNNVVVRYGHSLALYKDKIYMYGGKIDSTGN-----VTNELRVFHIHNESWVLLTPKAKEQYAVVGHSAHIVTLKNGRVVMLVIFGHCPLYGYISNVQEYDLDKN--TWSILHTQGALVQGGYGHSSVYDHRTRALYVHGGYKAFSANKYRLADDLYRYDVDTQMWTILKDSRFFRYLHTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRWSVLPRPDLHHDVNRFGHSAVLHNSTMYVFGGFNSLLLSDIL-VFTSEQCDAHRSEAACLAAGPGIRCVWNTGSSQCISWA--LATDEQEEKLKSECFSKRTLDHDRCDQHTDCYSCTANTNDCHWCNDHCVPRNHSCSEGQISIFRYENCPKDNPMY---YCNKKTSCRSCALDQNCQW 773 HSP 2 Score: 107.071 bits (266), Expect = 4.850e-68 Identity = 71/255 (27.84%), Postives = 125/255 (49.02%), Query Frame = 3
Query: 246 NKTTGSCTCGLDSTQMWGNKCQY--GRQRLVGKGGFITESEKVFEYHGSAKYMFLIDSKTDYLPIELVVTNFHTECNWDYLYVFDGKSIYDPLLAALNGKLVTNTNNTRT---IIAHSGSAFLYFYTDRCTSEDGFNVTYRVSTCKSEQCNNHGVC-----NENGKCLCENGWLSQNCTLNMCHNVKYDINSG---KKLCQHSSGQGENIL---ERASHAITITQSTKMWVVSGITSINNASSNHRENLNRALLY 962
N TG C C G +CQ+ GR RL G GF+T+ ++Y K +LI+ + + + + L +F TEC+WD+LYV+DG SIY PL+AA +G +V + T ++A SG A L+F++D + GFN+TY C + C+ G C ++ +C C W + C + C + N G + +C S +G + + ++ + + W +++ ++H+ +N +++
Sbjct: 112 NPGTGQCVCPAGWV---GEQCQHCGGRFRLTGSSGFVTDGPGNYKY--KTKCTWLIEGQPNRI-MRLRFNHFATECSWDHLYVYDGDSIYAPLVAAFSGLIVPERDGNETVPEVVATSGYALLHFFSDAAYNLTGFNITYSFDMCPN-NCSGRGECKISNSSDTVECECSENWKGEACDIPHCTD-----NCGFPHRGICNSSDVRGCSCFSDWQGPGCSVPVPANQSFWTREEYSNLKLPRASHKAVVNGNIMW 354 HSP 3 Score: 215.698 bits (548), Expect = 2.680e-56 Identity = 160/506 (31.62%), Postives = 240/506 (47.43%), Query Frame = 1
Query: 2236 TSCSEFNGCSTCVE-SENCLWCESTQTCLPSNMYVANFPYGQCMEYIQDKASCSVAKCEQQYSCRNCLQLPQCGWCESTN-----KCTTGGDEGPIN--GQCP-------------------KNDWMFTKCPKCDCNGHSKCDNITGECLQCNENVIGDHCNECAHGYYGNPANNGSCSNKCECNGHLLSCDVN-GECVCSSQGVTGSHCDKCDVQ--YEGDPRNGGICYYPLLANYQYTSSMSSKKQSGYV----LKTKDKKPFKVKIERLKGNIGSLNITIVYANN--------ETTELVSAYPLGEYSTTITEDTYDYSGVASIYVVVYGWEQSSNGFAIKIFFDPDDNAFDLVYFLIMFXXXXXXXXXXXXXXWKVKQRYDRYMYNRRQK--QEMEERISRPFTSMKILLRDKTDLPS--KEKVKHPPSLIGIQLLRQANNCGPASFLVRLPCEQNTQVTPAGQCGICIGTVL--ISQPSKRTKMQMQNSTR-RKRTNKALP 3606
T C+ C C S C+WC + + C+ SN YVA+FP+GQCME+ ++C C +C +CL+ P CGWC + KC G +GP+ Q P + +W F CP C CNGHSKC N C +C G HC C G+YG+P N G C C+CNGH C+ N G+C C+++GV G C C+V+ Y+G+P G CYY LL +YQ+T S+S + Y + T D++ ++ + N+ I +A + E +VS + EY + + + +D+ +I VY + I+I F N DLV F + F CF+SLL++ ++WK+KQ + RR++ +EM++ SRPF S+ + L + P +K P I ++ N S VRLP + P GQ G+ + + L ISQ + + R RK+ A P
Sbjct: 931 TPCALRTACGDCTSGSSECMWCSNMKQCVDSNAYVASFPFGQCMEWYT-MSTCPPENCSGYCTCSHCLEQPGCGWCTDPSNTGKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCPACQCNGHSKCIN-QSICEKCENLTTGKHCETCISGFYGDPTNGGKC-QPCKCNGHASLCNTNTGKCFCTTKGVKGDECQLCEVENRYQGNPLR-GTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQ--NRDLDMFINASKNFNLNITWAASFSAGTQAGEEMPVVSKTNIKEYKDSFSNEKFDFRNHPNITFFVYV-SNFTWPIKIQIAFSQHSNFMDLVQFFVTFFSCFLSLLLVAAVVWKIKQSC--WASRRREQLLREMQQMASRPFASVNVALETDEEPPDLIGGSIKTVPKPIALEPCF-GNKAAVLSVFVRLP-RGLGGIPPPGQSGLAVASALVDISQQMPIVYKEKSGAVRNRKQQPPAQP 1425 The following BLAST results are available for this feature:
BLAST of TCONS_00051590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.