TCONS_00051587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051587
Unique NameTCONS_00051587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051587 ID=TCONS_00051587|Name=TCONS_00051587|organism=Clytia hemisphaerica|type=transcript|length=1289bp
tgtagaAACATCAGAAGATCTGGACCGTTTTTCAAGCCCACTGCACGTTG
TCATACATTGAGACCACGACTACTGTTCACGTGGAGTGCCTCAATACAGC
ATCACATCGATAACATGAATCATGAGTATAAAAATATCACTGAAAAACTC
ATGATGCCGGACGAACTATCTAAATCCgagatgaagaaattttcaagtga
GATGAATCAGTTGAGGCCGATCATGGAAGCCTACCACCATCTACTGAAAA
AGAAAGAGGAACTACTAGAAGTTGCAGCATTAGCGATTGATGATATGGAA
TTTGAAAAGCTTGCAGAGGACGAGATGAAAGAGTTGCGCCAACAGATCCA
GCAACGAGAATCAGAACTCATTGAAATGGTTATACCTTCTGATCTCGATG
ATGAAAATAATGCAGTGTTGGAGGTTCGAGCTGGTACTGGTGGACGAGAG
GCTGCCATATTCGCTTTAGAGattttcaacatgTATAAGAAGTTTTCATC
CAGCAATAGATGGTCATTCGACATCGTATCTGAAAGTGTCAATGCTGAAG
GAGGACTGAAAGAGGCTTCTGCTACCATCAATGGAAATTCTGTATTCGCC
TTCATGAAGCACGAAATCGGTGTCCATCGAGTTCAACGTATTCCCGTTAC
CGAATCACAAGGTCGCGTACACACGTCAACTATTTCCGTTGCCGTACTTC
CGCAACCCGAAAACGTTGGTTTCGTTCTCGACATGAAAGACGTCAAAATA
GACACCTTTAAATCGTCTGGTGCCGGCGGTCAACATGTCAATACGACCGA
TAGTGCGGTACGGGTGACGCATTTACCAACAGGAATGACAGTTTCAATGC
AAGATGGCAGATCACAAATTATGAATCGGCAGAAGGCATTGCAAGTGCTG
AGTGCCAAACTTTACGACGAGGAACGGACACGTGCAATGAAAGAACGTAG
TGACGCACGGCGTATCCAAATTGGGTCCGCCCTAAGATCAGAACGTATAC
GAACTTATAATTATCCACAAGACCGAATCACTGATCATCGTATCGGTCTA
ACATTACACGGAGTAGAGGACTTATTAAATGGTGGATCAAATTTACATGA
ACTTATTGACTCGTTAAAAGCTCACGAGAAACTATTATCTTTAGAGAATC
TTTCTAATTTGAAACCAGTTGTCAGACTATAGTACCGACAGGTTTGTAGA
TTTTACATTTTAACTTTTCTACGAAATCAGAAAAACAACACAGTTTTCAA
ATCAAAGGTACAGTGGTAATATTTTCTGTGAACTGGTCC
Run BLAST on NCBI

transcript from alignment at scaffold_202:1203171..1214058+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051587 ID=TCONS_00051587|Name=TCONS_00051587|organism=Clytia hemisphaerica|type=transcript|length=10888bp|location=Sequence derived from alignment at scaffold_202:1203171..1214058+ (Clytia hemisphaerica)
tgtagaAACATCAGAAGATCTGGACCGTTTTTCAAGCCCACTGCACGTTG
TAAGTTAGTTGTTTTTAGTAGAGGCTCAATCCTTGGGATGGGATACGCAA
TCTCGAGTTCCTAATAAACGTACTGTAACGAATAAACATACATGGTTGAA
AATGAAGGGATAAAAATCTGATTGGAGCTTCTTTTCAGGCTAGGTTAGGG
GGGAAAATAATGGGTATTCTGCTTTCATTTGACGAATAGATAAAACCTCC
ATATTCAATAAAGGGTATTTAGCCTCAGAAACACAAGTAGGCACTTGAAA
TTGAGGAAAGGTTTGTTGAAATTAATAAATGTACATGTATTAGGATTTTG
AACCCTTTCTGAGAGGGTGCCTTTAGACTTGGCCAGGTAAAACCTTTTAT
GGCCAAACGACTGACGATACAGGCGAAACTCTCTGTGCCAAAAAAATGGA
GTCGAATAGAGAatgaaaatgtaagaaaaagtAAACCCCCATAAAGTTTT
CCACTAAGACTCATTTCAAAGTACAACGTTTTCTGTAGTTTAACTTTCAT
ATTAGAATATTGCTATCTCTCGAGCAATACAGTATTAAAATATAGAGGTC
AAAGTACAAATGTTTGACTGCCTTGTCAAAAAAGGTGGATACAGCCTATC
GCCTATCGCGTAATTCCCCCGGAGGGGGACCTTGACGGCCGTcagggacg
tgccgctggagttaaaataaagttaaaaagagataaaaagaaaaatggac
cctgtcagatatgaatatcTGGTAAATTTAAAACCCTGTCAGAATGAAAA
ATCGTAAAACCttccaattttcaccctgaaaagtggccaAAATGACTAAA
GATTGACacaaaattgaaagattttctaatttccatcctgaaaattgtca
aaaattaccaaaagttGATCCTATCAGataaatatcttaaaattagtaaa
tttaagACCCTGTCAGCTGTCAGATATCTTTAAGAGCCTAAAAAGGAACC
CTGAcaagcggcacgtccccgtacctatttttgcctGATTGCCCCCTCCC
CACCCGGGGTAATTCCCCATTTACGTTCATCGAAAATGAAAGTTTATTAT
TATGCTCTTCATGAATAATGAAAAGATCTGGAAATTCCCTAAGGAGCTCG
AAGGGAATTTTGAAATAGAgtcaaatcaaaatcaatttataaaatattaa
TAGAATTCATACCTTTCCATAAATACAATAGTTCTTACGAAAGTACAAAT
TAAAATGGAAATTCCCATTCCATTTTAAGATAGGGTAATCACCTATCATT
ATCATCATTTAAAGTGTTCCTAAGCACCAGCAAGTTATTGTTTGGTGTTC
TTTTCTTATTCTGTTGACACTTTGAACTACGTAATTTAAATTTATGTGTT
TTAAACATAATAAATATTCACGTTTTTTACCTATAACCTGGAgattcaaa
ttttgttattctttcactGGTGTCCAAACTTTATTGGAAAAGATGCAAgt
tttaatttgttttaattttttagtaaGTGATCGAGGACAGCGCAAAAATC
TGCCTCACAGGTCGAACCTGTCCTGTCTAGTTTTGACGGGGGGGACAGCC
AAGTAAGAtgactgacgggtatgtgcgggcaaTAAGGGTGTGTTTTTTAA
GGCATttccaaaatgcactgtaagggtgggttttttgccgcctgcactgt
aagggtacgaattGACCCATTTCAAtcactcccggggggggggggactNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCACTTCAGGGA
AAAAAGCtagaatgcactgtaagggtattcaACTTCGCGAAAAATGCACT
GCAAGGGTgtatttttcgggaaaaaccactgctctgtaagggtgcgattt
tgaACGCCAAATTTTAGCCCGCACGTACCGTCAGTCCAATATCCGACTGC
CCCCCCCGGACCTTCTTTAATCTCAACTTAAAgcagcagcctcaatgttt
cttaagaaatcggccttttcaGTATTTAATGTTTCTTACATATGTTTCTA
AGCTTTTTGACaaaatcagcctatttttcatgcaaagaagaaaaacattt
gtttcaattggaaggttttaaaaaaaacgaattaaaaatgttattttctc
attctcagcctcagcatgtttcttgtagatgtttcttagtttccaggcat
tctgagcctcatgtttcttaaaagtgtgtttcttaaaaaacacaACGTGT
AACCAAACAGTCTTTGGCTCTTTGGTATACCTTCGTTTCACATACCTGTT
GGCAGGGTTGGCACTCTTGCCCTACTTTGGCCTAAATCTTGTCCCCAATG
GGAAatgggaacaatagaatttctatccccattgggatttcgatcgAAAT
TCCCATCCCCACTGTTCACAAAAGAAACTGAATTTATGTATGAATTTATG
TTCAAAACTTCAGTCTTTCAGACCTAAAAATTTACAGTATGGTCTATTTT
TTGAGGGGACTATTTCGAGtagcctatctctatcccaacacgcgattttt
tgATCCGACAAGTTACAGACGGaacggtgtcgaggaaaaagccgtggtcg
tctggtacaggcaaTATTTCGAGTGGAACGCTATCCGGGTTGGAACGATA
TCAAGCGTTAAAAGTGAGTTTAGGAGTTTTGAACTGTAGAAAGTATTATA
ATAAGTATTatatagtatttttgaaatgtcAACAGACTTGGAACTGTGTG
AGATCATACACTGTATATAACATTGAACTGattcataaaattttgatatt
attcTCAAAATTCTCATACATTTTCCATGAATCAGAAGTACACCTGGAAA
TTCCCCACACCACTGCACGAGATTTCCGCGATGAATAATAAAAAAAGCTC
TTCAGAAAGATTGCTAGATTTTGTCTACGTACAGGGAATTCCCTGTTTCA
TAAGGGAAAGTACCCTATCGCCATAAATCATTCATTTAATCATAATAAAT
AGCTTGATATGTTTTTTAATATCATCATAACACAATTTTTTTAGTTAAGT
AAGCAACAGACAAGAAAGAATTTATCGTTTAAACGACTGAACATGGATAA
ATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAGCGACGTGGTT
ACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTTTCTTTTAACG
CTGGCAAGACATCGAACATCGAACAACAAGGAGATTATATCATTAGAAGA
TCTTGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCTGCACAGCTCT
TACGATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTTGTTTTCGAGA
TATAATGGCTCCATACAACGAATGCTGAAAGCTTGTTTACCAGACTCTCC
TAGCACAGTCATCAGTATCAAGGTAGGTCTTCTGATTTGATCTCCATGAT
TTGGTGTATTTTTCAGGCAGTTGCTGTGAAGTTTTAGGAGACATTTCTGt
ttgctgttttttttcttctaaactTACAAACgaacttaaaaatgaaaatg
tcctcttaccaaaataagttcctcgCCACAAACAATTCTGTTATTCATCA
GCTCTTGAAAACTAAACTGAAATATACTGACAGCTGATAATCACGGGAAC
AGATAGCAGTCAAAACTAGAGAGAAATCAAACTCGATCATTCAATATGGC
TAACAACATTTTTTATACTTTCTTCTACTTTTAGATTGGTTTGTTCCTCA
TTTCATTCGCTGGTTCATCTTTCTATTGGATCACATCAACTGAACCTCGT
TTGGATCGCTCTCTCTTCATAGTAATCACTTTTATCTTATCCCTGGATGT
CCTTCATTTATCCAAAGCTGAGATCTCACACCTCAATGAAACCAAAAACC
AACATGTTGCTGATGGCCTTGCTTGGAGTTATTACTTTGGttatttgaaa
ttgattttaCCAAGGTTTCCAGAGATGATTAATTTAGCCCATAGCGAAGA
TGATACATTCAAAGCAGATGGTGTTGATCTACGTGACCAATTATCGTCAG
AAAAGCTGTTCATTATTATCCCAAAGAATTGCTATACCCATGCACAACTT
GGTCAGTTTGATGATCGAATCTGTAGAGATGGTTTTAGCACGCCAGAATT
CAAGTACACCAGAGCTGGCGTCAAAGAGAGGTCATACAAGAATACCGCAT
GGAGAATTGACTACCCTGGAGAAGAATCACTGTATGTTCTAATGGAATAT
GCGACACCTTGTTTATCTATGCACGATATGATGCTACATGCTCGTTCcca
gtttgatgaagaagatttGGAAGCACAAGTGAAGGAATTCTCAATCAAAC
TACAATCGATTTTGGACAGCGATGAAAAATGTAAAGGTCGATATCATTTG
ATATTGTGTGGTGATATTAGACATCAGAAACTTGGTGATCTAATTAAAGA
AGCTGTGCAAAAAGAACGAGAAGAACAAAAGAAAGgacaataatttgaaa
attatgtTTTAGTATTCCCATGACGGGAAGGACTTACAAATCTTTGTTAA
TGATAAGTTGATGTACAAAATAACATTGAGACTTAATACTTGAAAGTATT
ATGCTGGATAAATATTCACTTACTCCATCCCCTCTTAGGGTTAGCCAGCT
ATATTTTTTCTTGCCTGTTAAACTAGTAAGCATTTATAAATAATATTTAT
GTATATACACagcatttttctttaaacaacaCATCTTTCCCGATATCGAT
TGCGTAATACTAAAACACGGGAAATTCGACatagattttttggaaaatgt
ttgtaattttttttcttataacttATAAAAGTGTAAAGGGACTCAAGACa
caagttttatcttcaaatctcataactgatcttttgactatggtcagagg
cCCATGTAGAACCCCCCCTTGGGGTTTGTCAGCTCTTTTTTTGCCtggaa
ttttaaaataatatttatgTACATACAGagcatttttctttaaacaattt
aaaaaaaagtacaaaatcatttttaactCATCTCGTGTTCTCTATTTTTT
TCCGGTCGATTCACCCcaacaaattttgagattttttgaaattttaaaaa
gttttcttagGTTTTCTTTAAGTGATATTGTTAACAGTTTGAGGAATTTA
CGTAACACCATTAAATTTCGCCAGTTAAGAATTTGAAAATAGTCATTTTA
GCGCCTACCTTTCAAGCAATCACCAtgaaatctcaattttttttctcgag
gATTTTTTATGCTGATATAAAAGCCTTCTAGTTGTAAATATTATATCTGT
GGTTATAACTTTTAGTATTCTTTTGTTGCTTTAGGTCATACATTGAGACC
ACGACTACTGTTCACGTGGAGTGCCTCAATACAGCATCACATCGATAACA
TGAATCATGAGTATAAAAATATCACTGAAAAACTCATGATGCCGGACGTA
agtttcttaaccttttttatgAGGGGCTTCAAATATGAATAATTCTAAAT
CTAATTGACTAAAAATCCTAATTTCTTGCTAATAAATTATCAAGCATCTA
TCAGAAGAGTTATTGACACATCGCTGTATGGGTCAAGCAGTTTTACTTCC
CCGAAAAAAAAACTGTTCCCATCCCAAAAGTCAATGCCCGTCAATGTTAA
AAGTTCTCTTGACTCAAGCGGATTTCCGTCGCAGCAAAGTATATATAAAG
AAgcttttccgtctcaaaattctgcataattcaccgaaatttcaagaata
tacgctagtagaccttttcataaattacgttacgaacatcacttgcctcg
tttatgaaaagttctatttgctttttataattctttgccacggaaagtca
tgttacatctttttcaaccaataagatttaataatttcgagggtaaaaca
aacactattatacatggtttaactcactaaaagattatgtttactgaaaa
cacataattaatctttagtaagtgttctgttgtaccccagatctgacgtc
atgccgtggcgaagaatacattttccgtctcagacgaaaaaccTTGTTTC
CATGTTGACCACTGCATGAATTTCAACCTAACGCTGCACACTCGCTAGGT
TTTAACCTTCAAAAATGGCCTTCTACAGTTAAGAAGAAACAAGTCTACCA
TTACTAACTAAAAAATCCTATGTCTAACCTGGTCTAATTTCTAGGAACTA
TCTAAATCCgagatgaagaaattttcaagtgaGATGAATCAGTTGAGGCC
GATCATGGAAGCCTACCACCATCTACTGAAAAAGAAAGAGGTACATAATC
TTCTTTTTTACTGTTCAAAACTCTGCATctgtaaaggccggtctccgcTT
GTGCGCGCTGCGATTGCACCTTTTggtttcaatcatttttgcttggaaaa
aagattacgtcgtAAAAAGgcagcgcgcgctcgaaaaaaaagttgaacac
atttcaacttttttcaaccgttacttCAGATTGCGCCAAtgttcgaaaaa
gtgcgatcgaagcgcgcggaagtggagaccggccttatcGATTTTTAAAA
ACTAATAACATGGAGGTGtctagtctgaatcacagacttCTACAAAACCT
CAGTATAGTATATCAAAACCCAgcttgcacacaacgttgtttcaatgttc
atctaatgttcacaacgtccatataccGTTCGATGAACGTtggaacaacg
ttgtgtgccagctgggtaaggAGCAGCATTCCGTTGGTGGATGCCAGCTC
ACGTGTATTGAATAATGAcctgattttaaaatatttgaaaaggaGACTAA
GCTATCCAAGAATATACAAGCCatgggggccgtccacatagtacgtgcGC
ACTAAgggggggtcttctcaaaagcgtatacTTGTCTACAGGGGGAGAGG
AGGGATCAAAGTAAAATGTACCtacgcagagaaaatttttcatagccctt
ttttgcttgtaaaatcttttgaaagagaataaaaagagaattattgtTCG
TTTGTTCCTTACGAAATGCCAactgtatgaaataaaggtccaaaccaaac
gatttgaattcgaaattttctttaatcgagggggggggaggggtgaatga
aaaagtacgtatttaccagggggtatagccatttgcgtacgcttgcgtac
agggggagggggtactcgattttcgacatttcagtgcgtacgtactatga
aTCCTCCTGAGTGTAACGGTTTACAAAATCTATTAGCAGAGAAGGGCCCT
TTTATATTGATCTCAATCAACCTTTTCCAGAGAGTATATTTTGCGCTTAA
CTTGATCAAAACTTGTTGTTACAGGCTAATTATTAGAAATAAGCTTTTGA
CCCACGTATGTTTACGTATGTTTAAAAATACTTTCATCCTCAACTTCGAC
GTACAGGAACTACTAGAAGTTGCAGCATTAGCGATTGATGATATGGAATT
TGAAAAGCTTGCAGAGGACGAGATGAAAGAGTTGCGCCAACAGATCCAGC
AACGAGAATCAGAACTCATTGAAATGGTTATACCTTCTGATCTCGATGAT
GAAAATAATGCAGTGTTGGAGGTTCGAGCTGGTACTGGTGGACGAGAGGC
TGCCATATTCGCTTTAGAGGTTTGTGTTTTAAGGGTTGGTACCGATCCGG
GGGGGTTGTTACCAGGGTTGCGAGCTGAAGGGGCGGGGGTGTGCCGCCCA
ACTTTCGACCTTtggacccttactgggactaaaaaggagaaaacaaagga
aaattttgtgaattttctgACCCTcattgggacaaatttgaccaaatttc
gatctttccgaaggaaaaaagttgaaattttctccgacccttagtgggac
tgaaatttgattttctgatttttccgacccttaaagGGACTTTGGAACCC
TTATGGGcagcacataccgtaccctccatttgcttaagggctctgaccat
agtcgaaaaattgactttagtatttgaacataaaagtttatatttttctt
gGCACTTTTGACAAataattgcctttataaattgttttttaatcaaatcc
cttaagagtaattaagaattgacgctatgaactttaaaaagacgttaata
ttatgttgcattaccttcttttataaaaagtgctaagttttaatgggtaa
ttaaggtttcaaatttttttcaaactgtccgcaaagaattgaactgtttt
aaatttttcggaaaggTTTTCttaattaatgcatcaaaagttatggctat
ttttctattaaaaattgtgatgaaaaattggtcaaaaagtactattttca
agattttgagacaaataagcttttagaaaaattttccgaaaatctatttt
CAGTTCAGTAAAAGATACATCATCTAccgcaaaagttttttcaaaatgct
ttttttcgccgaaaataagctcttcaaagttgaaatactcttcttcgcaa
aagtcttcattttcttcttcatcaaattttttcattgcgatttttaaatt
ttcagactcaaggataattggcctaacagaaaatgtataatatgccacag
ttttgtgtgctACATCAAATAGAAATTTATATATGGTATATATTTTTACT
ATGGTCAGAACCcctaagtaccccccctccCGGGGTGCCGATTGGCCTTT
CGTAGAAGGTGACGTCATACTGAATATAATGACTCCAgtatcaaaacaat
gataagaaagTATTTAGTGCACGTgctgattttcattggactttttcctg
atatttcattgtttttttcacgcaaaaacattattgataacaatgccacc
atcaagcatgatgtTCATAAAACTGATTTTGTATGCttggattttctaaa
aattgcagGAACAGCCGAGAATTAccagaaaaacagtttttcttgaattt
ttcaaaacatgactGAGTCCGATTTTCTCCTTATtcctatctaactttca
tcatcagttaggtccattcagcatctagcttgttcatcataattttattt
tcattttagattttcaacatgTATAAGAAGTTTTCATCCAGCAATAGATG
GTCATTCGACATCGTATCTGAAAGTGTCAATGCTGAAGGAGGACTGAAAG
AGGCTTCTGCTACCATCAATGGAAATTCTGTATTCGCCTTCATGAAGGTA
AGTGTTAAAGCCAGGTTAacgatattcaaaatctgaatgTCTGAAGGTCT
GAATCGCATCGAAAACAACAGTGCACTTTCTAACCTCAATCAATTGTTTA
ATTTGACAATAGAACACAAATAACACATTGCTGACCAACGATTTGGAAGG
CTTCGTTGTTAGAAATGTTAAATAAGAATTGAAACGAATATCAAGTTAAT
ATTTTACGTTACTTATCACCGTTGACAAATCCAAAGGTctaatctcaaaa
ttattgcctgggaaaactttatatttttttgtttgtctgagcataaattt
tgagattgcCCTGTTTCATGTAGATGGGACCCTCCTCACTTTGTAAAATG
GGCGTTATGCAAGATCAGCAAACAGCTTCTTATATATAGTGTCCCAGGAA
AAAGTTTTCTCTCCTTTTTTGTGAAACTGTTTTCCTTAAGTTGCATTTAT
TTGTGTCCTCTGGAAATCTATACCGCCTGGTAGTTATTGGTACAATTCGA
CAAAGCTAAGCTGAATACACTGGAAAGTCTACTATGCCAGAAAgaaatta
cagttgacgctctctaatccgATCTttaaggggaattggattttcatcga
ctAAGGAAGCTTATCGGCTAAGgaagcgtcgtttatgagagtttcttgtt
gacggggactttaaatatcatcaaataagggagcctatcgaatagtagaa
cgtcgaattagacaGTGTGGCGTttgcttattgattttttattccTACAA
GGTTAGTAAGTAGTCTGTTAATTATTGACCGAATCAATTTATCTTCTTTT
TGTTCGTTCTAGCACGAAATCGGTGTCCATCGAGTTCAACGTATTCCCGT
TACCGAATCACAAGGTCGCGTACACACGTCAACTATTTCCGTTGCCGTAC
TTCCGCAACCCGAAAACGTTGGTTTCGTTCTCGACATGAAAGACGTCAAA
ATAGACACCTTTAAATCGTCTGGTGCCGGCGGTCAACATGTCAATACGAC
CGATAGTGCGGTACGGGTGACGCATTTACCAACAGGAATGACAGTTTCAA
TGCAAGATGGCAGATCACAAATTATGGTAAGATAACTAAACGGCCTGAAC
GGTTATCAGTATTCTAATTTCGCGAAGATGGCCAGAATTTatgaaaatcg
cgaaagtttgtcTCGGGGTAGCTCATAATTTagattgatgattctgatgt
aAGACTTTGAGACCATGAGACTACTAATATGAATAGGTCCAAGTTATTAT
AGCGTAGTCTGGCAATCAGTGAGTCTAAGCGCTTTGATATTATACGATTC
CTTATTATCTCACTTTTTTCAGAATCGGCAGAAGGCATTGCAAGTGCTGA
GTGCCAAACTTTACGACGAGGAACGGACACGTGCAATGAAAGAACGTAGT
GACGCACGGCGTATCCAAATTGGGTCCGCCCTAAGATCAGAACGTATACG
AACTTATAATTATCCACAAGACCGAATCACTGATCATCGTATCGGTCTAA
CATTACACGGAGTAGAGGACTTATTAAATGGTGGATCAAATTTACATGAA
CTTATTGACTCGTTAAAAGCTCACGAGAAACTATTATCTTTAGAGAATCT
TTCTAATTTGAAACCAGTTGTCAGACTATAGTACCGACAGGTTTGTAGAT
TTTACATTTTAACTTTTCTACGAAATCAGAAAAACAACACAGTTTTCAAA
TCAAAGGTACAGTGGTAATATTTTCTGTGAACTGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032668XLOC_032668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051587-exon-scaffold_202-1491911889:1203171..1203219TCONS_00051587-exon-scaffold_202-1491911889:1203171..1203219Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1203171..1203219TCONS_00051587-exon-scaffold_202-1510915933:1203171..1203219Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1203171..1203219TCONS_00051587-exon-scaffold_202-1575043694:1203171..1203219Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1491911889:1208505..1208617TCONS_00051587-exon-scaffold_202-1491911889:1208505..1208617Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1208505..1208617TCONS_00051587-exon-scaffold_202-1510915933:1208505..1208617Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1208505..1208617TCONS_00051587-exon-scaffold_202-1575043694:1208505..1208617Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1491911889:1209365..1209460TCONS_00051587-exon-scaffold_202-1491911889:1209365..1209460Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1209365..1209460TCONS_00051587-exon-scaffold_202-1510915933:1209365..1209460Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1209365..1209460TCONS_00051587-exon-scaffold_202-1575043694:1209365..1209460Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1491911889:1210577..1210789TCONS_00051587-exon-scaffold_202-1491911889:1210577..1210789Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1210577..1210789TCONS_00051587-exon-scaffold_202-1510915933:1210577..1210789Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1210577..1210789TCONS_00051587-exon-scaffold_202-1575043694:1210577..1210789Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1491911889:1212180..1212317TCONS_00051587-exon-scaffold_202-1491911889:1212180..1212317Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1212180..1212317TCONS_00051587-exon-scaffold_202-1510915933:1212180..1212317Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1212180..1212317TCONS_00051587-exon-scaffold_202-1575043694:1212180..1212317Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1491911889:1213133..1213396TCONS_00051587-exon-scaffold_202-1491911889:1213133..1213396Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1213133..1213396TCONS_00051587-exon-scaffold_202-1510915933:1213133..1213396Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1213133..1213396TCONS_00051587-exon-scaffold_202-1575043694:1213133..1213396Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1491911889:1213643..1214058TCONS_00051587-exon-scaffold_202-1491911889:1213643..1214058Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1510915933:1213643..1214058TCONS_00051587-exon-scaffold_202-1510915933:1213643..1214058Clytia hemisphaericaexon
TCONS_00051587-exon-scaffold_202-1575043694:1213643..1214058TCONS_00051587-exon-scaffold_202-1575043694:1213643..1214058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1203171..1214058 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46802	2.24246	0.298746	0.131902	0	0	0	0	1.04944	2.27946	4.35301	1.53434	0.666981	2.63054	3.44609	2.05457	2.342	4.23658	0	1.81343	0.912818	1.79154	6.59159	3.38022	0	1.30806	3.1355	2.06093	2.05534	3.04739
Blast
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BLAST of TCONS_00051587 vs. Swiss-Prot (Human)
Match: RF1ML (Peptide chain release factor 1-like, mitochondrial OS=Homo sapiens GN=MTRF1L PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.951e-94
Identity = 139/279 (49.82%), Postives = 200/279 (71.68%), Query Frame = 1 
Query:  289 DDMEFEKLAEDEMKELRQQIQQRESELIEMVIPSDLDDENNAVLEVRAGTGGREAAIFALEIFNMYKKFSSSNRWSFDIVSESVNAEGGLKEASATINGNSVFAFMKHEIGVHRVQRIPVTESQGRVHTSTISVAVLPQPENVGFVLDMKDVKIDTFKSSGAGGQHVNTTDSAVRVTHLPTGMTVSMQDGRSQIMNRQKALQVLSAKLYDEERTRAMKERSDARRIQIGSALRSERIRTYNYPQDRITDHRIGLTLHGVEDLLNGGSNLHELIDSLKAH 1125
            ++ +  KLAE+E+   +++I Q + ++I +++PS+  DEN+ +LEV AG GG+EA +F  EIF+MY+++++  RW F+ +    +  GGL+ ASA+I G+  +  MK E GVHRVQR+P TE QGRVHTST++VA+LPQP  +  V++ KD++IDT ++SGAGGQHVNTTDSAVR+ HLPTG+    Q  RSQ+ N++ A+  L AKLY       + +R +AR+IQIGS  RSE+IRTYN+PQ+R+TDHRI  TLH +E  + G   L EL+ SLK +
Sbjct:   88 ENEDLRKLAENEITLCQKEITQLKHQIILLLVPSEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELVQSLKEY 366
The following BLAST results are available for this feature:
BLAST of TCONS_00051587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RF1ML1.951e-9449.82Peptide chain release factor 1-like, mitochondrial... [more]
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