TCONS_00051586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051586
Unique NameTCONS_00051586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051586 ID=TCONS_00051586|Name=TCONS_00051586|organism=Clytia hemisphaerica|type=transcript|length=1614bp
TTTTTTAGTTAAGTAAGCAACAGACAAGAAAGAATTTATCGTTTAAACGA
CTGAACATGGATAAATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCC
TGAGCGACGTGGTTACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTG
TGTTTCTTTTAACGCTGGCAAGACATCGAACATCGAACAACAAGGAGATT
ATATCATTAGAAGATCTTGGTGATATTGCTGTTATTGTCTTAGCAATAAT
CTCTGCACAGCTCTTACGATGCCTTTATTTGCTGGTTGAGGAAAGACGAT
GTTTGTTTTCGAGATATAATGGCTCCATACAACGAATGCTGAAAGCTTGT
TTACCAGACTCTCCTAGCACAGTCATCAGTATCAAGATTGGTTTGTTCCT
CATTTCATTCGCTGGTTCATCTTTTTATTGGATCACATCAACCGAACCTC
GTTTAGATTTCTCTCTCTTCATAGTAATCACTTTTATCTTATCCCTGGAT
GTCCTTCATTTATCCAAAGCTGAGATCTCCCACCTCAATGAAACCAAAAA
CCAACATGTTGCTGATGGCCTTGCTTGGAGTTATTACTTTGGttatttga
aattgattttaCCAAGGTTTCCAAAGATGATTAATTTAGCCGCAGGTGAA
GGTGATACATTCAAAGCAGATGGTGTTGATCTACGTGACCAATTATCGTC
AGAAAAGCTGTTCATTATTATCCCAAAGAATTGCTATACCCATGAACAAC
TCGGCCAGTTTGATGATCGAATCTGTAGAGATGGTTTCAGCATGCCAGAA
TTTAAGCATACCAGAGCTGGCGTCAAAGAGAGGTCATACAAGAATACCGC
ATGGAGAATTGACTACCCTGGAGAAGAATCATTGTATGTTCTAATGGAAT
ATGCGACACCTTGTTTATCTATGCACGATATGATGCTACATGCTCGTTCc
cagtttgatgaagaagatttGGAAGCACAAGTGAAGGAATTCTCAATCAA
ACTACAATCGATTTTGGACAGCGATGAAAAATGTAAAGGTCGATATCATT
TGATATTGTGTGGTGATATTAGACATCAGAAACTTGGTGATCTAATTAAA
GAAGCTGTGCAAAAAGAACGAGAAGAACAAAAGAAAGgacaataatttga
aaattatgtTTTAGTATTCCCATGACGGGAAGGACTTACAAATCTTTGTT
AATGATAAGTTGATGTACAAAATAACATTGAGACTTAATACTTGAAAGTA
TTATGCTGGATAAATATTCACTTACTCCATCCCCTCTTAGGGTTAGCCAG
CTATATTTTTTCTTGCCTGTTAAACTAGTAAGCATTTATAAATAATATTT
ATGTATATACACagcatttttctttaaacaacaCATCTTTCCCGATATCG
ATTGCGTAATACTAAAACACGGGAAATTCGACatagattttttggaaaat
gttttttttcttataacttATAAAAGTGTAAAGGGACTCAAGACacaagt
tttatcttcaaatctcataactgatcttttgactatggtcagaggcCCAT
GTAGAACCCCCCCTTGGGGTTTGTCAGCTCTTTTTTTGCCtggaatttta
aaataatatttatg
Run BLAST on NCBI

protein sequence of TCONS_00051586-protein

>TCONS_00051586-protein ID=TCONS_00051586-protein|Name=TCONS_00051586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MDKSLKVNNFFGELPERRGYGAECGKLAAVVVFLLTLARHRTSNNKEIIS
LEDLGDIAVIVLAIISAQLLRCLYLLVEERRCLFSRYNGSIQRMLKACLP
DSPSTVISIKIGLFLISFAGSSFYWITSTEPRLDFSLFIVITFILSLDVL
HLSKAEISHLNETKNQHVADGLAWSYYFGYLKLILPRFPKMINLAAGEGD
TFKADGVDLRDQLSSEKLFIIIPKNCYTHEQLGQFDDRICRDGFSMPEFK
HTRAGVKERSYKNTAWRIDYPGEESLYVLMEYATPCLSMHDMMLHARSQF
DEEDLEAQVKEFSIKLQSILDSDEKCKGRYHLILCGDIRHQKLGDLIKEA
VQKEREEQKKGQ
Run BLAST on NCBI

transcript from alignment at scaffold_202:1192322..1194247+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051586 ID=TCONS_00051586|Name=TCONS_00051586|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at scaffold_202:1192322..1194247+ (Clytia hemisphaerica)
TTTTTTAGTTAAGTAAGCAACAGACAAGAAAGAATTTATCGTTTAAACGA
CTGAACATGGATAAATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCC
TGAGCGACGTGGTTACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTG
TGTTTCTTTTAACGCTGGCAAGACATCGAACATCGAACAACAAGGAGATT
ATATCATTAGAAGATCTTGGTGATATTGCTGTTATTGTCTTAGCAATAAT
CTCTGCACAGCTCTTACGATGCCTTTATTTGCTGGTTGAGGAAAGACGAT
GTTTGTTTTCGAGATATAATGGCTCCATACAACGAATGCTGAAAGCTTGT
TTACCAGACTCTCCTAGCACAGTCATCAGTATCAAGGTAGGTCTTCTGAT
TTGATCTCCATGATTTGGTGTATTTTTCAGGCAGTTGCTGTGAAGTTTTA
GGAGACATTTCTGtttgctgttttttttcttctaaactTACAAACgaact
taaaaatgaaaatgtcctcttaccaaaataagttcctcgCCACAAACAAT
TCTGTTATTCATCAGCTCTTGAAAACTAAACTGAAATATACTGACAGCTG
ATAATCACGGGAACAGATAGCAGTCAAAACTAGAGAGAAATCAAACTCGA
TCATTCAATATGGCTAACAACATTTTTTATACTTTCTTCTACTTTTAGAT
TGGTTTGTTCCTCATTTCATTCGCTGGTTCATCTTTTTATTGGATCACAT
CAACCGAACCTCGTTTAGATTTCTCTCTCTTCATAGTAATCACTTTTATC
TTATCCCTGGATGTCCTTCATTTATCCAAAGCTGAGATCTCCCACCTCAA
TGAAACCAAAAACCAACATGTTGCTGATGGCCTTGCTTGGAGTTATTACT
TTGGttatttgaaattgattttaCCAAGGTTTCCAAAGATGATTAATTTA
GCCGCAGGTGAAGGTGATACATTCAAAGCAGATGGTGTTGATCTACGTGA
CCAATTATCGTCAGAAAAGCTGTTCATTATTATCCCAAAGAATTGCTATA
CCCATGAACAACTCGGCCAGTTTGATGATCGAATCTGTAGAGATGGTTTC
AGCATGCCAGAATTTAAGCATACCAGAGCTGGCGTCAAAGAGAGGTCATA
CAAGAATACCGCATGGAGAATTGACTACCCTGGAGAAGAATCATTGTATG
TTCTAATGGAATATGCGACACCTTGTTTATCTATGCACGATATGATGCTA
CATGCTCGTTCccagtttgatgaagaagatttGGAAGCACAAGTGAAGGA
ATTCTCAATCAAACTACAATCGATTTTGGACAGCGATGAAAAATGTAAAG
GTCGATATCATTTGATATTGTGTGGTGATATTAGACATCAGAAACTTGGT
GATCTAATTAAAGAAGCTGTGCAAAAAGAACGAGAAGAACAAAAGAAAGg
acaataatttgaaaattatgtTTTAGTATTCCCATGACGGGAAGGACTTA
CAAATCTTTGTTAATGATAAGTTGATGTACAAAATAACATTGAGACTTAA
TACTTGAAAGTATTATGCTGGATAAATATTCACTTACTCCATCCCCTCTT
AGGGTTAGCCAGCTATATTTTTTCTTGCCTGTTAAACTAGTAAGCATTTA
TAAATAATATTTATGTATATACACagcatttttctttaaacaacaCATCT
TTCCCGATATCGATTGCGTAATACTAAAACACGGGAAATTCGACatagat
tttttggaaaatgttttttttcttataacttATAAAAGTGTAAAGGGACT
CAAGACacaagttttatcttcaaatctcataactgatcttttgactatgg
tcagaggcCCATGTAGAACCCCCCCTTGGGGTTTGTCAGCTCTTTTTTTG
CCtggaattttaaaataatatttatg

Coding sequence (CDS) from alignment at scaffold_202:1192322..1194247+

>TCONS_00051586 ID=TCONS_00051586|Name=TCONS_00051586|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_202:1192322..1194247+ (Clytia hemisphaerica)
ATGGATAAATCTTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAGCG
ACGTGGTTACGGTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTTTC
TTTTAACGCTGGCAAGACATCGAACATCGAACAACAAGGAGATTATATCA
TTAGAAGATCTTGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCTGC
ACAGCTCTTACGATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTTGT
TTTCGAGATATAATGGCTCCATACAACGAATGCTGAAAGCTTGTTTACCA
GACTCTCCTAGCACAGTCATCAGTATCAAGATTGGTTTGTTCCTCATTTC
ATTCGCTGGTTCATCTTTTTATTGGATCACATCAACCGAACCTCGTTTAG
ATTTCTCTCTCTTCATAGTAATCACTTTTATCTTATCCCTGGATGTCCTT
CATTTATCCAAAGCTGAGATCTCCCACCTCAATGAAACCAAAAACCAACA
TGTTGCTGATGGCCTTGCTTGGAGTTATTACTTTGGttatttgaaattga
ttttaCCAAGGTTTCCAAAGATGATTAATTTAGCCGCAGGTGAAGGTGAT
ACATTCAAAGCAGATGGTGTTGATCTACGTGACCAATTATCGTCAGAAAA
GCTGTTCATTATTATCCCAAAGAATTGCTATACCCATGAACAACTCGGCC
AGTTTGATGATCGAATCTGTAGAGATGGTTTCAGCATGCCAGAATTTAAG
CATACCAGAGCTGGCGTCAAAGAGAGGTCATACAAGAATACCGCATGGAG
AATTGACTACCCTGGAGAAGAATCATTGTATGTTCTAATGGAATATGCGA
CACCTTGTTTATCTATGCACGATATGATGCTACATGCTCGTTCccagttt
gatgaagaagatttGGAAGCACAAGTGAAGGAATTCTCAATCAAACTACA
ATCGATTTTGGACAGCGATGAAAAATGTAAAGGTCGATATCATTTGATAT
TGTGTGGTGATATTAGACATCAGAAACTTGGTGATCTAATTAAAGAAGCT
GTGCAAAAAGAACGAGAAGAACAAAAGAAAGgacaataaATGGATAAATC
TTTAAAAGTTAACAACTTCTTTGGCGAGCTTCCTGAGCGACGTGGTTACG
GTGCAGAATGCGGTAAACTTGCTGCAGTTGTTGTGTTTCTTTTAACGCTG
GCAAGACATCGAACATCGAACAACAAGGAGATTATATCATTAGAAGATCT
TGGTGATATTGCTGTTATTGTCTTAGCAATAATCTCTGCACAGCTCTTAC
GATGCCTTTATTTGCTGGTTGAGGAAAGACGATGTTTGTTTTCGAGATAT
AATGGCTCCATACAACGAATGCTGAAAGCTTGTTTACCAGACTCTCCTAG
CACAGTCATCAGTATCAAGATTGGTTTGTTCCTCATTTCATTCGCTGGTT
CATCTTTTTATTGGATCACATCAACCGAACCTCGTTTAGATTTCTCTCTC
TTCATAGTAATCACTTTTATCTTATCCCTGGATGTCCTTCATTTATCCAA
AGCTGAGATCTCCCACCTCAATGAAACCAAAAACCAACATGTTGCTGATG
GCCTTGCTTGGAGTTATTACTTTGGttatttgaaattgattttaCCAAGG
TTTCCAAAGATGATTAATTTAGCCGCAGGTGAAGGTGATACATTCAAAGC
AGATGGTGTTGATCTACGTGACCAATTATCGTCAGAAAAGCTGTTCATTA
TTATCCCAAAGAATTGCTATACCCATGAACAACTCGGCCAGTTTGATGAT
CGAATCTGTAGAGATGGTTTCAGCATGCCAGAATTTAAGCATACCAGAGC
TGGCGTCAAAGAGAGGTCATACAAGAATACCGCATGGAGAATTGACTACC
CTGGAGAAGAATCATTGTATGTTCTAATGGAATATGCGACACCTTGTTTA
TCTATGCACGATATGATGCTACATGCTCGTTCccagtttgatgaagaaga
tttGGAAGCACAAGTGAAGGAATTCTCAATCAAACTACAATCGATTTTGG
ACAGCGATGAAAAATGTAAAGGTCGATATCATTTGATATTGTGTGGTGAT
ATTAGACATCAGAAACTTGGTGATCTAATTAAAGAAGCTGTGCAAAAAGA
ACGAGAAGAACAAAAGAAAGgacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032669XLOC_032669Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051586-proteinTCONS_00051586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051586-exon-scaffold_202-1491911889:1192322..1192707TCONS_00051586-exon-scaffold_202-1491911889:1192322..1192707Clytia hemisphaericaexon
TCONS_00051586-exon-scaffold_202-1510915933:1192322..1192707TCONS_00051586-exon-scaffold_202-1510915933:1192322..1192707Clytia hemisphaericaexon
TCONS_00051586-exon-scaffold_202-1575043694:1192322..1192707TCONS_00051586-exon-scaffold_202-1575043694:1192322..1192707Clytia hemisphaericaexon
TCONS_00051586-exon-scaffold_202-1491911889:1193020..1194247TCONS_00051586-exon-scaffold_202-1491911889:1193020..1194247Clytia hemisphaericaexon
TCONS_00051586-exon-scaffold_202-1510915933:1193020..1194247TCONS_00051586-exon-scaffold_202-1510915933:1193020..1194247Clytia hemisphaericaexon
TCONS_00051586-exon-scaffold_202-1575043694:1193020..1194247TCONS_00051586-exon-scaffold_202-1575043694:1193020..1194247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1192322..1194247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.783351	0.972905	0.985692	1.03884	0.67198	0.644703	2.53817	3.9323	4.08168	26.9657	5.60277	3.98656	20.3685	20.573	18.9382	17.0937	3.08904	3.52441	25.8221	41.0582	1.55176	1.08187	7.11366	9.21478	8.41899	9.68338	25.8685	24.8355	5.11377	1.48959
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029158STING
Vocabulary: Biological Process
TermDefinition
GO:0032481positive regulation of type I interferon production
GO:0002218activation of innate immune response
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002218 activation of innate immune response
biological_process GO:0032481 positive regulation of type I interferon production
Blast
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BLAST of TCONS_00051586 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.616e-26
Identity = 82/260 (31.54%), Postives = 127/260 (48.85%), Query Frame = 3 
Query:  282 LVEERRCLFSRYNGSIQRMLKACL--PDSPSTVISIKIGLF--LISFAGSSFYWITSTEPRLDFSLFIVITFILSLDVLHLSKAEISHLNETKNQHVADGLAWSYYFGYLKLILPRFPKMINLAAGEGDTFKADGVDLRDQLSSEKLFIIIPKNCYTHEQLGQFDDRICRDGFSMPEFKHTRAGVKERSYKNTAWRIDYPGEESLYVLMEYATPCLSMHDMMLHARSQFDEEDLEAQVKEFSIKLQSIL----DSDEKCK 1037
            L EE R + SRY GS  R ++ACL  P     ++ + I  +  L +  G  F W+ +        L   +  +L L    L+ AEIS + E  N +VA GLAWSYY GYL+LILP     I        T+     +L     S++L+I++P +C   + L   D  I R    +P+     AG+K+R Y N+ + +   G+ +   ++EYATP  ++  M  ++++ F  ED   Q K F   L+ IL    +S   C+
Sbjct:   66 LAEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLAL-----LGLSQALNILLGLK--GLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQARIR-------TYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNI-RFLDKLPQQTGDHAGIKDRVYSNSIYELLENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCR 310
The following BLAST results are available for this feature:
BLAST of TCONS_00051586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STING1.616e-2631.54Stimulator of interferon genes protein OS=Homo sap... [more]
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