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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051577 ID=TCONS_00051577|Name=TCONS_00051577|organism=Clytia hemisphaerica|type=transcript|length=2212bp
gagattgccaCATTTCACACGACCTTTCTATGTATTTTTGGAAGATAGTT
GAAATGGCTGAAGAAGGAAAACCGCAAACAAAAAgacttgaaaatattga
aaataatggCTTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACTA
TCCTCTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGTA
TACCGAAATTTTTACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTGG
AGATGCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGCT
CAATTGTGCTTTACGGAGAGGAGAAGAATCACACAGTATCGCGATATTCA
AACTCTCATTGGAGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCA
AATTTGTGTTTTCAAGattatttttttggTTATATCTTTTTGTGGAACTG
CTGTATACtggatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTG
TTATCCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGC
TGAAGTCTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCC
TTGCATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATG
AAAGGAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGA
AGATATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCA
AAAATTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACT
TTTAAATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGA
GCGTGTCTACAAGAATactgtttgggaggtaaaactTGAAGATGATGAAG
AACCACTGTACGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTAT
GAcatgaagaaagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGA
CCAAGTTAAAGAATTTACAACCAAACTGCAGAAGATTTTggatgaagatg
aagaatgcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCC
CAAAAACTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaa
taaagaaaaggatAAAAACATATAAGCTAACATAATGGTagttttgaatt
gaaatatgaaatgaAGTTCCCAGGAAAAAAACCGATTCcaccttttttta
tttcagaagtGGTATATTTCCAATCACAGCTATTTTTGGACCCAGGGATG
TAATAGCGTTTGAGAATGTATATGCCGAACAGGCCACTGAACACTGAGCC
AACTCTATAGAGAgatttgatttttgtgaaaaagtttacaaaatcAACGA
AAAAGTGTTCCTCAGAgatacaattttgaaaaaatttctaaccTTAGAGA
CCTTAGAGAGATCTTTTCTTGGTttccaaaaaaggaaaaatcccaacctt
agagagacttgaattttttttctaaactccTAGTGATCGTCTGCACATAC
CCAGAActatttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACTACT
ATGTTGTGAACAGTATTAAATCATTTAAGATAATAACCCACTGAGAACTG
TAGAATCTTTCCAATAAATGTGACATGAAGTCAGAAAACTGGAAACTTCT
CAAAACTAAAGTTTGGATGGGCTATAACTATCATGACTATAGTTTTGCGT
TTTTGtgaattattaaaaaatattaaatttaagTTTTAGGGTAATTTGAA
GGGCTAGTTTTTGTCTCGTTTGTATATACCCTTTTCAAGccatttttgta
gattttctcaattttcCATACATCATCCCGAATCTTATTGTATAATTGAA
AACTTTTgtctttaaattttatttttagtatCAATCTTTGTATGGATTTA
TTAAACACAAAACTTATAAAAGCGACACCATTTTCACAAGTATTTTTAAC
GATTATCAAGtatagaaaacaatttttaggataaaatataatgtttattg
ttgtttttgtaATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATT
TATTCCATAATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTA
TATTGTAAGAATTCTTTATTTGAAAGACACATATGATTGAAAAAGTTGCG
CTAATAGCTTTT Run BLAST on NCBI transcript from alignment at scaffold_202:1181359..1184920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051577 ID=TCONS_00051577|Name=TCONS_00051577|organism=Clytia hemisphaerica|type=transcript|length=3562bp|location=Sequence derived from alignment at scaffold_202:1181359..1184920+ (Clytia hemisphaerica)
gagattgccaCATTTCACACGACCTTTCTATGTATTTTTGGAAGATAGTA
TGTATTTTGAAAGATACCGGTAGTATTTTTGTTCACTGGAAAGTATTCTT
TCCataaaactaaaaatcttcaaattttgacaattttttatttttcgatg
acatcattgtttatgacgtcatttccttaatatctcctgacatatttatt
ttcagatataggttgtgacctttttttatcagtttttcatgctctttcga
ttgcaacaaaaacttttcaattttactactttttattttggttgccatag
taaccagtgacgtcagtttccatggcaacaggTGATCACACCCaacccca
cctctcaaattttgatcttctacattcaaggaacaactTTTAGcacttaa
atattttttgtagcttTAAAAACATGGCATAGCACAGTTGAGAGATAAAG
GTTGTCTGTCGACTTAAGACAAATTTACTATAAATAAGACTCAATAATTC
CAAAAATAACACACAAATTTCTTTGACAATATGGAGGGCTCATGCACCAA
CAAAAAACATTCTAGAATTTTAGCACTAGAAAAAGGGCAAACTCAAACAA
ATAATGTATCTTGAAGCTAATCAATAACATCATAACCTGTCATCGCAATT
AACAGAAGGTTTCTTTTGGTATTACTTATTGACTTTATTTTAACGCATGG
TGTATTCTTATTTTGTTTGTAGGTTGAAATGGCTGAAGAAGGAAAACCGC
AAACAAAAAgacttgaaaatattgaaaataatggCTTTGGTCCATTGCCG
AAAGCTCGTGGCATGCGTGATACTATCCTCTTCAGTTTACTAGTCCTTCT
TGTGTATTTAAGCAGTGCTGCAGTATACCGAAATTTTTACCAAGGAAAAC
GAGCTCTACTTTCACAAGATGTTGGAGATGCCTTTGTAATACTTTTTGGA
ATCTGTCTTGGGGAGTTGTTGCGCTCAATTGTGCTTTACGGAGAGGAGAA
GAATCACACAGTATCGCGATATTCAAACTCTCATTGGAGGGCTTTACAGG
CTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTTTTCAAGGTAAAATTG
GTTTTTTAACATTATTGGAAGTAGTATGTTGAAGATGTCTGACTTTTCTT
AACTTACAGGGTTGATTACAAAAGacttctgaattttttttatcaacatA
GGGCTGATAAATTTTAAACTCCCTCCTCCCATGCTGTTATCAAACAAGAT
TTTTCGAAACAAAGTTTTACCCTTTTTGGAAACAATTTTCCCAACCATGT
CCATCAGCATCagaggaattttttattttttatttttttatcactgTTTT
TAAAGAGATTTAATCTGATTGATTTAAATTTTTNAGTATCGCGATATTCA
AACTCTCATTGGAAGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCA
AATTTGTGTTTTCAAGGTAAAATTGGTCTTTTAACATTATTGGAAATAGT
ATGTTGAAGATGTCTGACTTTTCTTAACTTACGGATTTGATTACAAaaga
cttttgaattttttttatcaacatAGGGCTGATAAATTTTAAACTCCCTC
CTCCCATGCTGttatcaaacaaaatttttcgaaacaaAGTTTTACCCTTT
TTGGAAACAATTTTCCCAACCATGTCCATCAGCATCAgaggaattttttt
attttttatttttttatcactgtttttaaagagatttaatctgattaatt
taaattttcattttagattatttttttggTTATATCTTTTTGTGGAACTG
CTGTATACtggatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTG
TTATCCATAACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGC
TGAAGTCTCCCATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCC
TTGCATGGAGTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATG
AAAGGAATGTTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGA
AGATATTCGTGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCA
AAAATTGTTACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACT
TTTAAATGCAGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGA
GCGTGTCTACAAGAATactgtttgggaggtaaaactTGAAGATGATGAAG
AACCACTGTACGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTAT
GAcatgaagaaagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGA
CCAAGTTAAAGAATTTACAACCAAACTGCAGAAGATTTTggatgaagatg
aagaatgcAAAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCC
CAAAAACTCAGCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaa
taaagaaaaggatAAAAACATATAAGCTAACATAATGGTagttttgaatt
gaaatatgaaatgaAGTTCCCAGGAAAAAAACCGATTCcaccttttttta
tttcagaagtGGTATATTTCCAATCACAGCTATTTTTGGACCCAGGGATG
TAATAGCGTTTGAGAATGTATATGCCGAACAGGCCACTGAACACTGAGCC
AACTCTATAGAGAgatttgatttttgtgaaaaagtttacaaaatcAACGA
AAAAGTGTTCCTCAGAgatacaattttgaaaaaatttctaaccTTAGAGA
CCTTAGAGAGATCTTTTCTTGGTttccaaaaaaggaaaaatcccaacctt
agagagacttgaattttttttctaaactccTAGTGATCGTCTGCACATAC
CCAGAActatttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACTACT
ATGTTGTGAACAGTATTAAATCATTTAAGATAATAACCCACTGAGAACTG
TAGAATCTTTCCAATAAATGTGACATGAAGTCAGAAAACTGGAAACTTCT
CAAAACTAAAGTTTGGATGGGCTATAACTATCATGACTATAGTTTTGCGT
TTTTGtgaattattaaaaaatattaaatttaagTTTTAGGGTAATTTGAA
GGGCTAGTTTTTGTCTCGTTTGTATATACCCTTTTCAAGccatttttgta
gattttctcaattttcCATACATCATCCCGAATCTTATTGTATAATTGAA
AACTTTTgtctttaaattttatttttagtatCAATCTTTGTATGGATTTA
TTAAACACAAAACTTATAAAAGCGACACCATTTTCACAAGTATTTTTAAC
GATTATCAAGtatagaaaacaatttttaggataaaatataatgtttattg
ttgtttttgtaATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATT
TATTCCATAATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTA
TATTGTAAGAATTCTTTATTTGAAAGACACATATGATTGAAAAAGTTGCG
CTAATAGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051577-exon-scaffold_202-1491911889:1181359..1181405 | TCONS_00051577-exon-scaffold_202-1491911889:1181359..1181405 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1510915933:1181359..1181405 | TCONS_00051577-exon-scaffold_202-1510915933:1181359..1181405 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1575043694:1181359..1181405 | TCONS_00051577-exon-scaffold_202-1575043694:1181359..1181405 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1491911889:1182081..1182449 | TCONS_00051577-exon-scaffold_202-1491911889:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1510915933:1182081..1182449 | TCONS_00051577-exon-scaffold_202-1510915933:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1575043694:1182081..1182449 | TCONS_00051577-exon-scaffold_202-1575043694:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1491911889:1183125..1184920 | TCONS_00051577-exon-scaffold_202-1491911889:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1510915933:1183125..1184920 | TCONS_00051577-exon-scaffold_202-1510915933:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051577-exon-scaffold_202-1575043694:1183125..1184920 | TCONS_00051577-exon-scaffold_202-1575043694:1183125..1184920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1181359..1184920 + |
Blast
BLAST of TCONS_00051577 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 5.154e-30 Identity = 76/259 (29.34%), Postives = 131/259 (50.58%), Query Frame = 3
Query: 315 GEEKNHTVSRYSNSHWRALQACV--PYSWKQICVFKIIFL--VISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAEVSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGEDIRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQERVYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQVKEFTTKLQKILDEDEECKNKYEIV 1079
EE H SRY S+WR ++AC+ P + + I F + + G W+ A A ++L + L+ AE+S + E N +VA GLAWSYY GYL+++LP ++ A+ Y ++ S++L+I++P +C D+ D I F +P G+++RVY N+++E+ LE+ + ++EYATP+ +++ M + A F +D +Q K F L+ IL + E +N ++
Sbjct: 67 AEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNIL-------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQ-----ARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYEL-LENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLI 312
The following BLAST results are available for this feature:
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