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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051576 ID=TCONS_00051576|Name=TCONS_00051576|organism=Clytia hemisphaerica|type=transcript|length=2443bp
CCCGACTGAGTGGCCTGCGttcattgaaattttccttGTTCGTCTggaaa
actttctttttatagGGGAAGTAcaggtatttttttcatttctgtttATA
AACACTGAAAGTTTGAGGGTGTTAGGATCATCAGGTCTTGCAGTGCTTCC
TTTCATATTGTATTGCGTTTTATACAGTTTATTTCATTATTACATATTCG
GATAATAAACTTCACCATTTTGAACATTTGAATATAACTAGGGAATCGAA
AAGAATTATATTGAACTTCAATTTGGAGGTTGAAATGGCTGAAGAAGGAA
AACCGCAAACAAAAAgacttgaaaatattgaaaataatggCTTTGGTCCA
TTGCCGAAAGCTCGTGGCATGCGTGATACTATCCTCTTCAGTTTACTAGT
CCTTCTTGTGTATTTAAGCAGTGCTGCAGTATACCGAAATTTTTACCAAG
GAAAACGAGCTCTACTTTCACAAGATGTTGGAGATGCCTTTGTAATACTT
TTTGGAATCTGTCTTGGGGAGTTGTTGCGCTCAATTGTGCTTTACGGAGA
GGAGAAGAATCACACAGTATCGCGATATTCAAACTCTCATTGGAGGGCTT
TACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTTTTCAAGatt
atttttttggTTATATCTTTTTGTGGAACTGCTGTATACtggatttttgc
tgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCCATAACAGTTTTCA
GTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTCCCATTTGAAT
GAAACTGAAAACAAACATGTTGCTGATGGCCTTGCATGGAGTTATTACTT
TGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGAATGTTGGCTTTAG
CTCAAGGAGATGAGTACAAAATTGATGGCGAAGATATTCGTGATAAATTA
TCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATTGTTACACCTATGA
TTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAATGCAGTATGCCAC
CAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTACAAGAATact
gtttgggaggtaaaactTGAAGATGATGAAGAACCACTGTACGTGCTTAT
GGAATATGCCACACCTGTCCTATCCATGTATGAcatgaagaaagaagaaa
gtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGTTAAAGAATTTACA
ACCAAACTGCAGAAGATTTTggatgaagatgaagaatgcAAAAATAAGTA
TGAAATTGTCTTATGCGGTGATGTCAAATCCCAAAAACTCAGCGAGATCA
TGCGCAGAACCATtcaaaaggaaaaggaaaataaagaaaaggatAAAAAC
ATATAAGCTAACATAATGGTagttttgaattgaaatatgaaatgaAGTTC
CCAGGAAAAAAACCGATTCcacctttttttatttcagaagtGGTATATTT
CCAATCACAGCTATTTTTGGACCCAGGGATGTAATAGCGTTTGAGAATGT
ATATGCCGAACAGGCCACTGAACACTGAGCCAACTCTATAGAGAgatttg
atttttgtgaaaaagtttacaaaatcAACGAAAAAGTGTTCCTCAGAgat
acaattttgaaaaaatttctaaccTTAGAGACCTTAGAGAGATCTTTTCT
TGGTttccaaaaaaggaaaaatcccaaccttagagagacttgaatttttt
ttctaaactccTAGTGATCGTCTGCACATACCCAGAActatttttgccta
aattcCTCTCCCCCGTTTTTCAGTAACTACTATGTTGTGAACAGTATTAA
ATCATTTAAGATAATAACCCACTGAGAACTGTAGAATCTTTCCAATAAAT
GTGACATGAAGTCAGAAAACTGGAAACTTCTCAAAACTAAAGTTTGGATG
GGCTATAACTATCATGACTATAGTTTTGCGTTTTTGtgaattattaaaaa
atattaaatttaagTTTTAGGGTAATTTGAAGGGCTAGTTTTTGTCTCGT
TTGTATATACCCTTTTCAAGccatttttgtagattttctcaattttcCAT
ACATCATCCCGAATCTTATTGTATAATTGAAAACTTTTgtctttaaattt
tatttttagtatCAATCTTTGTATGGATTTATTAAACACAAAACTTATAA
AAGCGACACCATTTTCACAAGTATTTTTAACGATTATCAAGtatagaaaa
caatttttaggataaaatataatgtttattgttgtttttgtaATGTTTTA
ATTCTTTTATTCCTTGTTAATGGAAGAAATTTATTCCATAATCTTGTTGT
AAAAGGTGAATGTATTAAAATAAGCAGGTTATATTGTAAGAATTCTTTAT
TTGAAAGACACATATGATTGAAAAAGTTGCGCTAATAGCTTTT Run BLAST on NCBI transcript from alignment at scaffold_202:1180583..1184920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051576 ID=TCONS_00051576|Name=TCONS_00051576|organism=Clytia hemisphaerica|type=transcript|length=4338bp|location=Sequence derived from alignment at scaffold_202:1180583..1184920+ (Clytia hemisphaerica)
CCCGACTGAGTGGCCTGCGttcattgaaattttccttGTTCGTCTggaaa
actttctttttatagGGGAAGTAcaggtatttttttcatttctgtttATA
AACACTGAAAGTTTGAGGGTGTTAGGATCATCAGGTCTTGCAGTGCTTCC
TTTCATATTGTATTGCGTTTTATACAGTTTATTTCATTATTACATATTCG
GATAATAAACTTCACCATTTTGAACATTTGAATATAACTAGGGAATCGAA
AAGAATTATATTGAACTTCAATTTGGAGGtaaaaatgtttatatttttaa
caaATACCTAGATTTACTGTTTTAATTACAGGGTGGCCAGAGCTCAGTCA
GGGATATCCTTGCAATACTCCTTTAGGAGAACGCAACAgtctatagacct
tttttcaaagaggacgtcctgttgaataattatgtagtccagccataaaa
acaatgatagtgtACTGTATcaagcatattgtaataattatgcatggttt
tatcattgtttttctgctggactacataattattcaacagggtggcctct
ttgaaaaaaggtctctatcaggattagaaactaggctaggcTTATCTCTT
TTATCTCTCCCtgccctttacaacaatacaatgctgacaagttgacacaa
cacattgactaGTAATCCCTGtagagagaagtttatattgaaatctgcga
caaaaaacgaaagtggtttcttctactgattgcttcctggCGCTCCTTCa
tagctgtttatcaaatttccaccaatgagattgccaCATTTCACACGACC
TTTCTATGTATTTTTGGAAGATAGTATGTATTTTGAAAGATACCGGTAGT
ATTTTTGTTCACTGGAAAGTATTCTTTCCataaaactaaaaatcttcaaa
ttttgacaattttttatttttcgatgacatcattgtttatgacgtcattt
ccttaatatctcctgacatatttattttcagatataggttgtgacctttt
tttatcagtttttcatgctctttcgattgcaacaaaaacttttcaatttt
actactttttattttggttgccatagtaaccagtgacgtcagtttccatg
gcaacaggTGATCACACCCaaccccacctctcaaattttgatcttctaca
ttcaaggaacaactTTTAGcacttaaatattttttgtagcttTAAAAACA
TGGCATAGCACAGTTGAGAGATAAAGGTTGTCTGTCGACTTAAGACAAAT
TTACTATAAATAAGACTCAATAATTCCAAAAATAACACACAAATTTCTTT
GACAATATGGAGGGCTCATGCACCAACAAAAAACATTCTAGAATTTTAGC
ACTAGAAAAAGGGCAAACTCAAACAAATAATGTATCTTGAAGCTAATCAA
TAACATCATAACCTGTCATCGCAATTAACAGAAGGTTTCTTTTGGTATTA
CTTATTGACTTTATTTTAACGCATGGTGTATTCTTATTTTGTTTGTAGGT
TGAAATGGCTGAAGAAGGAAAACCGCAAACAAAAAgacttgaaaatattg
aaaataatggCTTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACT
ATCCTCTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGT
ATACCGAAATTTTTACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTG
GAGATGCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGC
TCAATTGTGCTTTACGGAGAGGAGAAGAATCACACAGTATCGCGATATTC
AAACTCTCATTGGAGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGC
AAATTTGTGTTTTCAAGGTAAAATTGGTTTTTTAACATTATTGGAAGTAG
TATGTTGAAGATGTCTGACTTTTCTTAACTTACAGGGTTGATTACAAAAG
acttctgaattttttttatcaacatAGGGCTGATAAATTTTAAACTCCCT
CCTCCCATGCTGTTATCAAACAAGATTTTTCGAAACAAAGTTTTACCCTT
TTTGGAAACAATTTTCCCAACCATGTCCATCAGCATCagaggaatttttt
attttttatttttttatcactgTTTTTAAAGAGATTTAATCTGATTGATT
TAAATTTTTNAGTATCGCGATATTCAAACTCTCATTGGAAGGCTTTACAG
GCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTTTTCAAGGTAAAATT
GGTCTTTTAACATTATTGGAAATAGTATGTTGAAGATGTCTGACTTTTCT
TAACTTACGGATTTGATTACAAaagacttttgaattttttttatcaacat
AGGGCTGATAAATTTTAAACTCCCTCCTCCCATGCTGttatcaaacaaaa
tttttcgaaacaaAGTTTTACCCTTTTTGGAAACAATTTTCCCAACCATG
TCCATCAGCATCAgaggaatttttttattttttatttttttatcactgtt
tttaaagagatttaatctgattaatttaaattttcattttagattatttt
tttggTTATATCTTTTTGTGGAACTGCTGTATACtggatttttgctgaaa
aggtgtcGTTCAATGCATTCCATTTGTTATCCATAACAGTTTTCAGTGCA
ATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTCCCATTTGAATGAAAC
TGAAAACAAACATGTTGCTGATGGCCTTGCATGGAGTTATTACTTTGGCT
ACCTCAAAATCATGTTGCCTGGTATGAAAGGAATGTTGGCTTTAGCTCAA
GGAGATGAGTACAAAATTGATGGCGAAGATATTCGTGATAAATTATCTTC
AGAAAAGCTTCACATTGTGATTCCCAAAAATTGTTACACCTATGATTCTT
TTAAAGAAGTAGATAAAAGAATCACTTTTAAATGCAGTATGCCACCAATC
AAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTACAAGAATactgtttg
ggaggtaaaactTGAAGATGATGAAGAACCACTGTACGTGCTTATGGAAT
ATGCCACACCTGTCCTATCCATGTATGAcatgaagaaagaagaaagtgCT
CACTTCCATGGACAGGATCTTGAAGACCAAGTTAAAGAATTTACAACCAA
ACTGCAGAAGATTTTggatgaagatgaagaatgcAAAAATAAGTATGAAA
TTGTCTTATGCGGTGATGTCAAATCCCAAAAACTCAGCGAGATCATGCGC
AGAACCATtcaaaaggaaaaggaaaataaagaaaaggatAAAAACATATA
AGCTAACATAATGGTagttttgaattgaaatatgaaatgaAGTTCCCAGG
AAAAAAACCGATTCcacctttttttatttcagaagtGGTATATTTCCAAT
CACAGCTATTTTTGGACCCAGGGATGTAATAGCGTTTGAGAATGTATATG
CCGAACAGGCCACTGAACACTGAGCCAACTCTATAGAGAgatttgatttt
tgtgaaaaagtttacaaaatcAACGAAAAAGTGTTCCTCAGAgatacaat
tttgaaaaaatttctaaccTTAGAGACCTTAGAGAGATCTTTTCTTGGTt
tccaaaaaaggaaaaatcccaaccttagagagacttgaattttttttcta
aactccTAGTGATCGTCTGCACATACCCAGAActatttttgcctaaattc
CTCTCCCCCGTTTTTCAGTAACTACTATGTTGTGAACAGTATTAAATCAT
TTAAGATAATAACCCACTGAGAACTGTAGAATCTTTCCAATAAATGTGAC
ATGAAGTCAGAAAACTGGAAACTTCTCAAAACTAAAGTTTGGATGGGCTA
TAACTATCATGACTATAGTTTTGCGTTTTTGtgaattattaaaaaatatt
aaatttaagTTTTAGGGTAATTTGAAGGGCTAGTTTTTGTCTCGTTTGTA
TATACCCTTTTCAAGccatttttgtagattttctcaattttcCATACATC
ATCCCGAATCTTATTGTATAATTGAAAACTTTTgtctttaaattttattt
ttagtatCAATCTTTGTATGGATTTATTAAACACAAAACTTATAAAAGCG
ACACCATTTTCACAAGTATTTTTAACGATTATCAAGtatagaaaacaatt
tttaggataaaatataatgtttattgttgtttttgtaATGTTTTAATTCT
TTTATTCCTTGTTAATGGAAGAAATTTATTCCATAATCTTGTTGTAAAAG
GTGAATGTATTAAAATAAGCAGGTTATATTGTAAGAATTCTTTATTTGAA
AGACACATATGATTGAAAAAGTTGCGCTAATAGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051576-exon-scaffold_202-1491911889:1180583..1180860 | TCONS_00051576-exon-scaffold_202-1491911889:1180583..1180860 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1510915933:1180583..1180860 | TCONS_00051576-exon-scaffold_202-1510915933:1180583..1180860 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1575043694:1180583..1180860 | TCONS_00051576-exon-scaffold_202-1575043694:1180583..1180860 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1491911889:1182081..1182398 | TCONS_00051576-exon-scaffold_202-1491911889:1182081..1182398 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1510915933:1182081..1182398 | TCONS_00051576-exon-scaffold_202-1510915933:1182081..1182398 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1575043694:1182081..1182398 | TCONS_00051576-exon-scaffold_202-1575043694:1182081..1182398 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1491911889:1182774..1182824 | TCONS_00051576-exon-scaffold_202-1491911889:1182774..1182824 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1510915933:1182774..1182824 | TCONS_00051576-exon-scaffold_202-1510915933:1182774..1182824 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1575043694:1182774..1182824 | TCONS_00051576-exon-scaffold_202-1575043694:1182774..1182824 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1491911889:1183125..1184920 | TCONS_00051576-exon-scaffold_202-1491911889:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1510915933:1183125..1184920 | TCONS_00051576-exon-scaffold_202-1510915933:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051576-exon-scaffold_202-1575043694:1183125..1184920 | TCONS_00051576-exon-scaffold_202-1575043694:1183125..1184920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1180583..1184920 + |
Blast
BLAST of TCONS_00051576 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.824e-30 Identity = 76/259 (29.34%), Postives = 131/259 (50.58%), Query Frame = 3
Query: 546 GEEKNHTVSRYSNSHWRALQACV--PYSWKQICVFKIIFL--VISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAEVSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGEDIRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQERVYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQVKEFTTKLQKILDEDEECKNKYEIV 1310
EE H SRY S+WR ++AC+ P + + I F + + G W+ A A ++L + L+ AE+S + E N +VA GLAWSYY GYL+++LP ++ A+ Y ++ S++L+I++P +C D+ D I F +P G+++RVY N+++E+ LE+ + ++EYATP+ +++ M + A F +D +Q K F L+ IL + E +N ++
Sbjct: 67 AEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNIL-------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQ-----ARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYEL-LENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLI 312
The following BLAST results are available for this feature:
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