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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051575 ID=TCONS_00051575|Name=TCONS_00051575|organism=Clytia hemisphaerica|type=transcript|length=2453bp
TTACGCTGTACCCGACTGAGTGGCCTGCGttcattgaaattttccttGTT
CGTCTggaaaactttctttttatagGGGAAGTAcaggtatttttttcatt
tctgtttATAAACACTGAAAGTTTGAGGGTGTTAGGATCATCAGGTCTTG
CAGTGCTTCCTTTCATATTGTATTGCGTTTTATACAGTTTATTTCATTAT
TACATATTCGGATAATAAACTTCACCATTTTGAACATTTGAATATAACTA
GGGAATCGAAAAGAATTATATTGAACTTCAATTTGGAGGTTGAAATGGCT
GAAGAAGGAAAACCGCAAACAAAAAgacttgaaaatattgaaaataatgg
CTTTGGTCCATTGCCGAAAGCTCGTGGCATGCGTGATACTATCCTCTTCA
GTTTACTAGTCCTTCTTGTGTATTTAAGCAGTGCTGCAGTATACCGAAAT
TTTTACCAAGGAAAACGAGCTCTACTTTCACAAGATGTTGGAGATGCCTT
TGTAATACTTTTTGGAATCTGTCTTGGGGAGTTGTTGCGCTCAATTGTGC
TTTACGGAGAGGAGAAGAATCACACAGTATCGCGATATTCAAACTCTCAT
TGGAGGGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGT
TTTCAAGattatttttttggTTATATCTTTTTGTGGAACTGCTGTATACt
ggatttttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCCATA
ACAGTTTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTC
CCATTTGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGCATGGA
GTTATTACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGAATG
TTGGCTTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGATATTCG
TGATAAATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATTGTT
ACACCTATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAATGC
AGTATGCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTA
CAAGAATactgtttgggaggtaaaactTGAAGATGATGAAGAACCACTGT
ACGTGCTTATGGAATATGCCACACCTGTCCTATCCATGTATGAcatgaag
aaagaagaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGTTAA
AGAATTTACAACCAAACTGCAGAAGATTTTggatgaagatgaagaatgcA
AAAATAAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAAAAACTC
AGCGAGATCATGCGCAGAACCATtcaaaaggaaaaggaaaataaagaaaa
ggatAAAAACATATAAGCTAACATAATGGTagttttgaattgaaatatga
aatgaAGTTCCCAGGAAAAAAACCGATTCcacctttttttatttcagaag
tGGTATATTTCCAATCACAGCTATTTTTGGACCCAGGGATGTAATAGCGT
TTGAGAATGTATATGCCGAACAGGCCACTGAACACTGAGCCAACTCTATA
GAGAgatttgatttttgtgaaaaagtttacaaaatcAACGAAAAAGTGTT
CCTCAGAgatacaattttgaaaaaatttctaaccTTAGAGACCTTAGAGA
GATCTTTTCTTGGTttccaaaaaaggaaaaatcccaaccttagagagact
tgaattttttttctaaactccTAGTGATCGTCTGCACATACCCAGAActa
tttttgcctaaattcCTCTCCCCCGTTTTTCAGTAACTACTATGTTGTGA
ACAGTATTAAATCATTTAAGATAATAACCCACTGAGAACTGTAGAATCTT
TCCAATAAATGTGACATGAAGTCAGAAAACTGGAAACTTCTCAAAACTAA
AGTTTGGATGGGCTATAACTATCATGACTATAGTTTTGCGTTTTTGtgaa
ttattaaaaaatattaaatttaagTTTTAGGGTAATTTGAAGGGCTAGTT
TTTGTCTCGTTTGTATATACCCTTTTCAAGccatttttgtagattttctc
aattttcCATACATCATCCCGAATCTTATTGTATAATTGAAAACTTTTgt
ctttaaattttatttttagtatCAATCTTTGTATGGATTTATTAAACACA
AAACTTATAAAAGCGACACCATTTTCACAAGTATTTTTAACGATTATCAA
Gtatagaaaacaatttttaggataaaatataatgtttattgttgtttttg
taATGTTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATTTATTCCATA
ATCTTGTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTATATTGTAAG
AATTCTTTATTTGAAAGACACATATGATTGAAAAAGTTGCGCTAATAGCT
TTT Run BLAST on NCBI transcript from alignment at scaffold_202:1180573..1184920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051575 ID=TCONS_00051575|Name=TCONS_00051575|organism=Clytia hemisphaerica|type=transcript|length=4348bp|location=Sequence derived from alignment at scaffold_202:1180573..1184920+ (Clytia hemisphaerica)
TTACGCTGTACCCGACTGAGTGGCCTGCGttcattgaaattttccttGTT
CGTCTggaaaactttctttttatagGGGAAGTAcaggtatttttttcatt
tctgtttATAAACACTGAAAGTTTGAGGGTGTTAGGATCATCAGGTCTTG
CAGTGCTTCCTTTCATATTGTATTGCGTTTTATACAGTTTATTTCATTAT
TACATATTCGGATAATAAACTTCACCATTTTGAACATTTGAATATAACTA
GGGAATCGAAAAGAATTATATTGAACTTCAATTTGGAGGtaaaaatgttt
atatttttaacaaATACCTAGATTTACTGTTTTAATTACAGGGTGGCCAG
AGCTCAGTCAGGGATATCCTTGCAATACTCCTTTAGGAGAACGCAACAgt
ctatagaccttttttcaaagaggacgtcctgttgaataattatgtagtcc
agccataaaaacaatgatagtgtACTGTATcaagcatattgtaataatta
tgcatggttttatcattgtttttctgctggactacataattattcaacag
ggtggcctctttgaaaaaaggtctctatcaggattagaaactaggctagg
cTTATCTCTTTTATCTCTCCCtgccctttacaacaatacaatgctgacaa
gttgacacaacacattgactaGTAATCCCTGtagagagaagtttatattg
aaatctgcgacaaaaaacgaaagtggtttcttctactgattgcttcctgg
CGCTCCTTCatagctgtttatcaaatttccaccaatgagattgccaCATT
TCACACGACCTTTCTATGTATTTTTGGAAGATAGTATGTATTTTGAAAGA
TACCGGTAGTATTTTTGTTCACTGGAAAGTATTCTTTCCataaaactaaa
aatcttcaaattttgacaattttttatttttcgatgacatcattgtttat
gacgtcatttccttaatatctcctgacatatttattttcagatataggtt
gtgacctttttttatcagtttttcatgctctttcgattgcaacaaaaact
tttcaattttactactttttattttggttgccatagtaaccagtgacgtc
agtttccatggcaacaggTGATCACACCCaaccccacctctcaaattttg
atcttctacattcaaggaacaactTTTAGcacttaaatattttttgtagc
ttTAAAAACATGGCATAGCACAGTTGAGAGATAAAGGTTGTCTGTCGACT
TAAGACAAATTTACTATAAATAAGACTCAATAATTCCAAAAATAACACAC
AAATTTCTTTGACAATATGGAGGGCTCATGCACCAACAAAAAACATTCTA
GAATTTTAGCACTAGAAAAAGGGCAAACTCAAACAAATAATGTATCTTGA
AGCTAATCAATAACATCATAACCTGTCATCGCAATTAACAGAAGGTTTCT
TTTGGTATTACTTATTGACTTTATTTTAACGCATGGTGTATTCTTATTTT
GTTTGTAGGTTGAAATGGCTGAAGAAGGAAAACCGCAAACAAAAAgactt
gaaaatattgaaaataatggCTTTGGTCCATTGCCGAAAGCTCGTGGCAT
GCGTGATACTATCCTCTTCAGTTTACTAGTCCTTCTTGTGTATTTAAGCA
GTGCTGCAGTATACCGAAATTTTTACCAAGGAAAACGAGCTCTACTTTCA
CAAGATGTTGGAGATGCCTTTGTAATACTTTTTGGAATCTGTCTTGGGGA
GTTGTTGCGCTCAATTGTGCTTTACGGAGAGGAGAAGAATCACACAGTAT
CGCGATATTCAAACTCTCATTGGAGGGCTTTACAGGCTTGTGTTCCATAC
TCTTGGAAGCAAATTTGTGTTTTCAAGGTAAAATTGGTTTTTTAACATTA
TTGGAAGTAGTATGTTGAAGATGTCTGACTTTTCTTAACTTACAGGGTTG
ATTACAAAAGacttctgaattttttttatcaacatAGGGCTGATAAATTT
TAAACTCCCTCCTCCCATGCTGTTATCAAACAAGATTTTTCGAAACAAAG
TTTTACCCTTTTTGGAAACAATTTTCCCAACCATGTCCATCAGCATCaga
ggaattttttattttttatttttttatcactgTTTTTAAAGAGATTTAAT
CTGATTGATTTAAATTTTTNAGTATCGCGATATTCAAACTCTCATTGGAA
GGCTTTACAGGCTTGTGTTCCATACTCTTGGAAGCAAATTTGTGTTTTCA
AGGTAAAATTGGTCTTTTAACATTATTGGAAATAGTATGTTGAAGATGTC
TGACTTTTCTTAACTTACGGATTTGATTACAAaagacttttgaatttttt
ttatcaacatAGGGCTGATAAATTTTAAACTCCCTCCTCCCATGCTGtta
tcaaacaaaatttttcgaaacaaAGTTTTACCCTTTTTGGAAACAATTTT
CCCAACCATGTCCATCAGCATCAgaggaatttttttattttttatttttt
tatcactgtttttaaagagatttaatctgattaatttaaattttcatttt
agattatttttttggTTATATCTTTTTGTGGAACTGCTGTATACtggatt
tttgctgaaaaggtgtcGTTCAATGCATTCCATTTGTTATCCATAACAGT
TTTCAGTGCAATCAATCAAGTGGTTCTGTCCAAAGCTGAAGTCTCCCATT
TGAATGAAACTGAAAACAAACATGTTGCTGATGGCCTTGCATGGAGTTAT
TACTTTGGCTACCTCAAAATCATGTTGCCTGGTATGAAAGGAATGTTGGC
TTTAGCTCAAGGAGATGAGTACAAAATTGATGGCGAAGATATTCGTGATA
AATTATCTTCAGAAAAGCTTCACATTGTGATTCCCAAAAATTGTTACACC
TATGATTCTTTTAAAGAAGTAGATAAAAGAATCACTTTTAAATGCAGTAT
GCCACCAATCAAGAAAACCAGAGGAGGAGTTCAAGAGCGTGTCTACAAGA
ATactgtttgggaggtaaaactTGAAGATGATGAAGAACCACTGTACGTG
CTTATGGAATATGCCACACCTGTCCTATCCATGTATGAcatgaagaaaga
agaaagtgCTCACTTCCATGGACAGGATCTTGAAGACCAAGTTAAAGAAT
TTACAACCAAACTGCAGAAGATTTTggatgaagatgaagaatgcAAAAAT
AAGTATGAAATTGTCTTATGCGGTGATGTCAAATCCCAAAAACTCAGCGA
GATCATGCGCAGAACCATtcaaaaggaaaaggaaaataaagaaaaggatA
AAAACATATAAGCTAACATAATGGTagttttgaattgaaatatgaaatga
AGTTCCCAGGAAAAAAACCGATTCcacctttttttatttcagaagtGGTA
TATTTCCAATCACAGCTATTTTTGGACCCAGGGATGTAATAGCGTTTGAG
AATGTATATGCCGAACAGGCCACTGAACACTGAGCCAACTCTATAGAGAg
atttgatttttgtgaaaaagtttacaaaatcAACGAAAAAGTGTTCCTCA
GAgatacaattttgaaaaaatttctaaccTTAGAGACCTTAGAGAGATCT
TTTCTTGGTttccaaaaaaggaaaaatcccaaccttagagagacttgaat
tttttttctaaactccTAGTGATCGTCTGCACATACCCAGAActattttt
gcctaaattcCTCTCCCCCGTTTTTCAGTAACTACTATGTTGTGAACAGT
ATTAAATCATTTAAGATAATAACCCACTGAGAACTGTAGAATCTTTCCAA
TAAATGTGACATGAAGTCAGAAAACTGGAAACTTCTCAAAACTAAAGTTT
GGATGGGCTATAACTATCATGACTATAGTTTTGCGTTTTTGtgaattatt
aaaaaatattaaatttaagTTTTAGGGTAATTTGAAGGGCTAGTTTTTGT
CTCGTTTGTATATACCCTTTTCAAGccatttttgtagattttctcaattt
tcCATACATCATCCCGAATCTTATTGTATAATTGAAAACTTTTgtcttta
aattttatttttagtatCAATCTTTGTATGGATTTATTAAACACAAAACT
TATAAAAGCGACACCATTTTCACAAGTATTTTTAACGATTATCAAGtata
gaaaacaatttttaggataaaatataatgtttattgttgtttttgtaATG
TTTTAATTCTTTTATTCCTTGTTAATGGAAGAAATTTATTCCATAATCTT
GTTGTAAAAGGTGAATGTATTAAAATAAGCAGGTTATATTGTAAGAATTC
TTTATTTGAAAGACACATATGATTGAAAAAGTTGCGCTAATAGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051575-exon-scaffold_202-1491911889:1180573..1180860 | TCONS_00051575-exon-scaffold_202-1491911889:1180573..1180860 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1510915933:1180573..1180860 | TCONS_00051575-exon-scaffold_202-1510915933:1180573..1180860 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1575043694:1180573..1180860 | TCONS_00051575-exon-scaffold_202-1575043694:1180573..1180860 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1491911889:1182081..1182449 | TCONS_00051575-exon-scaffold_202-1491911889:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1510915933:1182081..1182449 | TCONS_00051575-exon-scaffold_202-1510915933:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1575043694:1182081..1182449 | TCONS_00051575-exon-scaffold_202-1575043694:1182081..1182449 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1491911889:1183125..1184920 | TCONS_00051575-exon-scaffold_202-1491911889:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1510915933:1183125..1184920 | TCONS_00051575-exon-scaffold_202-1510915933:1183125..1184920 | Clytia hemisphaerica | exon |
| TCONS_00051575-exon-scaffold_202-1575043694:1183125..1184920 | TCONS_00051575-exon-scaffold_202-1575043694:1183125..1184920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1180573..1184920 + |
Blast
BLAST of TCONS_00051575 vs. Swiss-Prot (Human)
Match: STING (Stimulator of interferon genes protein OS=Homo sapiens GN=TMEM173 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.919e-30 Identity = 76/259 (29.34%), Postives = 131/259 (50.58%), Query Frame = 1
Query: 556 GEEKNHTVSRYSNSHWRALQACV--PYSWKQICVFKIIFL--VISFCGTAVYWIFAEKVSFNAFHLLSITVFSAINQVVLSKAEVSHLNETENKHVADGLAWSYYFGYLKIMLPGMKGMLALAQGDEYKIDGEDIRDKLSSEKLHIVIPKNCYTYDSFKEVDKRITFKCSMPPIKKTRGGVQERVYKNTVWEVKLEDDEEPLYVLMEYATPVLSMYDMKKEESAHFHGQDLEDQVKEFTTKLQKILDEDEECKNKYEIV 1320
EE H SRY S+WR ++AC+ P + + I F + + G W+ A A ++L + L+ AE+S + E N +VA GLAWSYY GYL+++LP ++ A+ Y ++ S++L+I++P +C D+ D I F +P G+++RVY N+++E+ LE+ + ++EYATP+ +++ M + A F +D +Q K F L+ IL + E +N ++
Sbjct: 67 AEELRHIHSRYRGSYWRTVRACLGCPLRRGALLLLSIYFYYSLPNAVGPPFTWMLALLGLSQALNIL-------LGLKGLAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILPELQ-----ARIRTYNQHYNNLLRGAVSQRLYILLPLDCGVPDNLSMADPNIRFLDKLPQQTGDHAGIKDRVYSNSIYEL-LENGQRAGTCVLEYATPLQTLFAMSQYSQAGFSREDRLEQAKLFCRTLEDILADAPESQNNCRLI 312
The following BLAST results are available for this feature:
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