TCONS_00051570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051570
Unique NameTCONS_00051570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051570 ID=TCONS_00051570|Name=TCONS_00051570|organism=Clytia hemisphaerica|type=transcript|length=3093bp
CCATATGGACGTccagatttttctatttttgctgGAGTGAAGAATATTTG
AAAGTCTCTTTTATAGTTATGTAGTAGATGTTTTTCAGCTTCAAGAAGCC
ATAATTCTGACAGAAAAATAGCATCATATTTTTGTAGAAGAGTGTTTATA
TATACAGAGTTTCCTTTAAATCCGTGACAGTTCAGGGATGCTAATTTAAT
AATATTTGCTGTGAGTTGATCCATTTTGTCGGTTGTTTATGTAATTATAG
TCTTTTTctatattgttttcaaaattatcgTATCTGTTGGGTTTGTTATT
AGGGTGTCGGTTGGTACTGGGCGCTCTGTTGTCATGGTATTGGGTACTGT
TGGATGTCCTGTTGTCACGGCATTGGTCGGTATTTGGTGGATTGTTGTCA
TAATACTGGTCGTTTTTAGATGCTCTGTTCTGTCTGTTGTGCTGGTATGG
GCTGTTGTTGAGCCTCCTATTGTTGTGGTATAGAATTTTGCTGGGTGTTC
TGTTGGCATCATGGTATTGGTCATTGTAAGATGTTCTGTTGTCATAGGTT
CGGTCTCTGAAGGGTGTTCTAGTGTTGTCCTGGTAATGACTTGTACGGTT
GCTGCTGGGTGACTTGTTGTCAAGGTAACGATTGCTGTTGGGTGACTTGT
CGTCATGGTAACGGTTGCTGTTGAATGTCTTGTTTTGAGGATATTGGTTA
TCGTCGGGTGTCCTGTTGCCATGTTGTTGAACGTTGGGTCTCCTGTTTGC
AGGGTGGTGATATTGGTTACGGTGTCTCTTCGGTTTGCGGTAGTGTCTAA
TTATCAGTCCTTCTGGCCAATTTTTCGGTTCCAGAACTTTATCTTTATCT
GTCTGTTGGAAGTCAATACGGTATGATTTATTGTATTGGTTTTCCTTTAT
GAGTTCAATATTGGTTGGAGCTACAATCTCATCACtaataaaatttctaa
cttCTTCATCGGTTAAGTTTTTATTCAAGCCTCCAAGGAAAATAGAAAGC
GGTCTGATTTCTCCTGTAATGTGTGGGCATGGGATTCCTGTTCCAAAGAT
TGGTTGTTGGTAAGATTTGTTGTTGGATTGTTGTGGTATGGCCTCGGTGC
TGGTAGGTTgttcttgtttattttgtagtTGTCGGAAATCGTGGAAGAGC
TGGTCAAGTTTTGTGCTTGTATTTTCTAGTTTTGAATTTGTGAGTTCTAG
CTGTTTTTTCAGATGTTCGTTTTCTTGTCTGACAGATTTTACAGTATTCA
CAAGATCGGTGATCTGGTTCAACATTTCTTTAGTGTCGATACCCATGATT
GGTTGAGTCCCATATGTAGAGTTGGATTTATTTTGTGTCTGGTTGCTAGA
TCTGTAGATATCATCCagcttttgaacaattttttctTCATGTATGCTGA
GACCCATATTGTAGATATCAACTATGGCGTTTTCATGTTTAATTCGTTTA
CAAATATGGTTTTTCAGTTCAATGTCTGTTATCAAGAAGCCATTTTCAAT
CAGTGTTTCCTCTGAGAAAGAATCCAAGAAAATGTAGAATATTTGTTCCC
TCAGTAATCCGATGGTTTTGGTGCTGATAGGTGTGAATGCTTTAACAAAT
TCATCTTTTGATAATCGATAAATTTTTGCTTTATTGTTGATAAAGATTGT
TGATGGTTCTAGACAGTTATCTTTCAGTAGTTCAGTTATAATTTCTCTGA
TCTCCGCGCATctgtccgccatcttgaaagaAATCTGTAGATCtgtagat
aaagaaaattgtaGCCAGGGAAGTTGTTCTGGCTCATCAAGATCAGAACG
ACATTTACGAGATCGATCGCCTTCAAAATGATAGGGATCAATTTACCACT
GTGGTGGATAAAACATTGTTGGATTCACTTGCCATTGAATTAGCAGAAAG
TGAGAAAGTCAATGAGATTCTCCTCAAAAAGCTTtatgaaaaggaagaaa
aaatgcTAGCCAATGAAAAACTCTATTCCTGTTGGCAGAAATCACTTGTG
GAAAATGATGAACTGGAGGACTATGAATTAGATCTATTCTTCCAACCATT
TGAAGAAGAATGGTATTCGAATAATCAGTTCGAATACCAATATGGTGTAA
TAGATGCAGAAGAAGACCCATTAATCCGGGAGCTGGGGGAGGTCAACTAT
GACTGTCGCCGGACTATATACGAGAACATGAGCTTTGAAGAACTTGTACG
CTTTGTCTACGGTGACTCTATTGAAGTAGATTCTGATCCCGACGAGGAAG
AATATGATGTCAGTGACGTCATGGATGATGGCGGCGACGTTGAAGTGGAT
GCAGATTCCGACGTCGACGTCAACAACGACGTCAGTGAAGATGTCGACGA
CGACGAAGAATTCGAAGTCGATGATGATGAAGACGACGATGTCGATGACG
GTATCGAATTTGCCTTGATCGGAAACGACAAAGCCGTCATGATTATTTTC
GTCGTGAACCTCTCCCTTCATTCATCAACCAACCACGTAAAGAGAAGGGA
GAAAGAACTCAATCTATATTTTTCCTGTAAAATACTTCACTCATATGTCC
CTTGTTGCTCAGTAAGCCTACAGTGGGGTCCACGTTACTCCACACCAGCG
TGAGCACGGAACATGAACAAAAAGCCAGAACGATAGAAATACCATTTCTG
AAGGCTAAGCAACATCACTTATATCAACAAATCATGATCAACTATAAAGA
TGCATAATGTGACGAGTGATGACTTACGAACCAAACAAAATGGGCCAACA
ATTCTTATCACCAGTACCATCAAATATCACCATTTGAGCAAAACCATGAG
CAGGTATAATACTGAGATGCGGATTGCGATGAGTTGAAGAACTCCAATCC
TACGATGCGAACTAGATGGACCAACGAGTGTTACCATGGGTACCAACAAG
TGTTACCATGGGTACCATCAAATTTAGAGAGGGAGGCGGGTGATTCCAAA
CGACAAGCATATGACTTCAGGAACGAGGCTTTGGGGGCTTTGCTTCGTTT
CCGTAGTTTCATGTGGAAAGGGAAGAAAATCCTGCCATGTCAATTGTTCT
ATATTGTTATATTAATCGAAATAATATTACCatcataataaaa
Run BLAST on NCBI

transcript from alignment at scaffold_202:1123882..1127182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051570 ID=TCONS_00051570|Name=TCONS_00051570|organism=Clytia hemisphaerica|type=transcript|length=3301bp|location=Sequence derived from alignment at scaffold_202:1123882..1127182+ (Clytia hemisphaerica)
CCATATGGACGTccagatttttctatttttgctgGAGTGAAGAATATTTG
AAAGTCTCTTTTATAGTTATGTAGTAGATGTTTTTCAGCTTCAAGAAGCC
ATAATTCTGACAGAAAAATAGCATCATATTTTTGTAGAAGAGTGTTTATA
TATACAGAGTTTCCTTTAAATCCGTGACAGTTCAGGGATGCTAATTTAAT
AATATTTGCTGTGAGTTGATCCATTTTGTCGGTTGTTTATGTAATTATAG
TCTTTTTctatattgttttcaaaattatcgTATCTGTTGGGTTTGTTATT
AGGGTGTCGGTTGGTACTGGGCGCTCTGTTGTCATGGTATTGGGTACTGT
TGGATGTCCTGTTGTCACGGCATTGGTCGGTATTTGGTGGATTGTTGTCA
TAATACTGGTCGTTTTTAGATGCTCTGTTCTGTCTGTTGTGCTGGTATGG
GCTGTTGTTGAGCCTCCTATTGTTGTGGTATAGAATTTTGCTGGGTGTTC
TGTTGGCATCATGGTATTGGTCATTGTAAGATGTTCTGTTGTCATAGGTT
CGGTCTCTGAAGGGTGTTCTAGTGTTGTCCTGGTAATGACTTGTACGGTT
GCTGCTGGGTGACTTGTTGTCAAGGTAACGATTGCTGTTGGGTGACTTGT
CGTCATGGTAACGGTTGCTGTTGAATGTCTTGTTTTGAGGATATTGGTTA
TCGTCGGGTGTCCTGTTGCCATGTTGTTGAACGTTGGGTCTCCTGTTTGC
AGGGTGGTGATATTGGTTACGGTGTCTCTTCGGTTTGCGGTAGTGTCTAA
TTATCAGTCCTTCTGGCCAATTTTTCGGTTCCAGAACTTTATCTTTATCT
GTCTGTTGGAAGTCAATACGGTATGATTTATTGTATTGGTTTTCCTTTAT
GAGTTCAATATTGGTTGGAGCTACAATCTCATCACtaataaaatttctaa
cttCTTCATCGGTTAAGTTTTTATTCAAGCCTCCAAGGAAAATAGAAAGC
GGTCTGATTTCTCCTGTAATGTGTGGGCATGGGATTCCTGTTCCAAAGAT
TGGTTGTTGGTAAGATTTGTTGTTGGATTGTTGTGGTATGGCCTCGGTGC
TGGTAGGTTgttcttgtttattttgtagtTGTCGGAAATCGTGGAAGAGC
TGGTCAAGTTTTGTGCTTGTATTTTCTAGTTTTGAATTTGTGAGTTCTAG
CTGTTTTTTCAGATGTTCGTTTTCTTGTCTGACAGATTTTACAGTATTCA
CAAGATCGGTGATCTGGTTCAACATTTCTTTAGTGTCGATACCCATGATT
GGTTGAGTCCCATATGTAGAGTTGGATTTATTTTGTGTCTGGTTGCTAGA
TCTGTAGATATCATCCagcttttgaacaattttttctTCATGTATGCTGA
GACCCATATTGTAGATATCAACTATGGCGTTTTCATGTTTAATTCGTTTA
CAAATATGGTTTTTCAGTTCAATGTCTGTTATCAAGAAGCCATTTTCAAT
CAGTGTTTCCTCTGAGAAAGAATCCAAGAAAATGTAGAATATTTGTTCCC
TCAGTAATCCGATGGTTTTGGTGCTGATAGGTGTGAATGCTTTAACAAAT
TCATCTTTTGATAATCGATAAATTTTTGCTTTATTGTTGATAAAGATTGT
TGATGGTTCTAGACAGTTATCTTTCAGTAGTTCAGTTATAATTTCTCTGA
TCTCCGCGCATctgtccgccatcttgaaagaAATCTGTAGATCtgtagat
aaagaaaattgtaGCCAGGGAAGTTGTTCTGGCTCATCAAGGTATATTTa
tttaaatttccagatttgaATACTACCTTGCCAAATGTTGAAAAATCATT
ATCTTCGATTTATAAGCATCTTTCGGCAGCATAGCTAGCTATGTAAGTTA
AGGGTGTATTTTTTGTACCAATAAATGAAATACGAGTTTTTTTCTTACTA
AAATGATATTTATTAAGAGGTGTAAAATTAATATGCCGTTATTTTACAGA
TCAGAACGACATTTACGAGATCGATCGCCTTCAAAATGATAGGGATCAAT
TTACCACTGTGGTGGATAAAACATTGTTGGATTCACTTGCCATTGAATTA
GCAGAAAGTGAGAAAGTCAATGAGATTCTCCTCAAAAAGCTTtatgaaaa
ggaagaaaaaatgcTAGCCAATGAAAAACTCTATTCCTGTTGGCAGAAAT
CACTTGTGGAAAATGATGAACTGGAGGACTATGAATTAGATCTATTCTTC
CAACCATTTGAAGAAGAATGGTATTCGAATAATCAGTTCGAATACCAATA
TGGTGTAATAGATGCAGAAGAAGACCCATTAATCCGGGAGCTGGGGGAGG
TCAACTATGACTGTCGCCGGACTATATACGAGAACATGAGCTTTGAAGAA
CTTGTACGCTTTGTCTACGGTGACTCTATTGAAGTAGATTCTGATCCCGA
CGAGGAAGAATATGATGTCAGTGACGTCATGGATGATGGCGGCGACGTTG
AAGTGGATGCAGATTCCGACGTCGACGTCAACAACGACGTCAGTGAAGAT
GTCGACGACGACGAAGAATTCGAAGTCGATGATGATGAAGACGACGATGT
CGATGACGGTATCGAATTTGCCTTGATCGGAAACGACAAAGCCGTCATGA
TTATTTTCGTCGTGAACCTCTCCCTTCATTCATCAACCAACCACGTAAAG
AGAAGGGAGAAAGAACTCAATCTATATTTTTCCTGTAAAATACTTCACTC
ATATGTCCCTTGTTGCTCAGTAAGCCTACAGTGGGGTCCACGTTACTCCA
CACCAGCGTGAGCACGGAACATGAACAAAAAGCCAGAACGATAGAAATAC
CATTTCTGAAGGCTAAGCAACATCACTTATATCAACAAATCATGATCAAC
TATAAAGATGCATAATGTGACGAGTGATGACTTACGAACCAAACAAAATG
GGCCAACAATTCTTATCACCAGTACCATCAAATATCACCATTTGAGCAAA
ACCATGAGCAGGTATAATACTGAGATGCGGATTGCGATGAGTTGAAGAAC
TCCAATCCTACGATGCGAACTAGATGGACCAACGAGTGTTACCATGGGTA
CCAACAAGTGTTACCATGGGTACCATCAAATTTAGAGAGGGAGGCGGGTG
ATTCCAAACGACAAGCATATGACTTCAGGAACGAGGCTTTGGGGGCTTTG
CTTCGTTTCCGTAGTTTCATGTGGAAAGGGAAGAAAATCCTGCCATGTCA
ATTGTTCTATATTGTTATATTAATCGAAATAATATTACCatcataataaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032665XLOC_032665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051570-exon-scaffold_202-1491911889:1123882..1125672TCONS_00051570-exon-scaffold_202-1491911889:1123882..1125672Clytia hemisphaericaexon
TCONS_00051570-exon-scaffold_202-1510915933:1123882..1125672TCONS_00051570-exon-scaffold_202-1510915933:1123882..1125672Clytia hemisphaericaexon
TCONS_00051570-exon-scaffold_202-1575043694:1123882..1125672TCONS_00051570-exon-scaffold_202-1575043694:1123882..1125672Clytia hemisphaericaexon
TCONS_00051570-exon-scaffold_202-1491911889:1125881..1127182TCONS_00051570-exon-scaffold_202-1491911889:1125881..1127182Clytia hemisphaericaexon
TCONS_00051570-exon-scaffold_202-1510915933:1125881..1127182TCONS_00051570-exon-scaffold_202-1510915933:1125881..1127182Clytia hemisphaericaexon
TCONS_00051570-exon-scaffold_202-1575043694:1125881..1127182TCONS_00051570-exon-scaffold_202-1575043694:1125881..1127182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1123882..1127182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0123016	0	0	0.0683334	0.0829468	0.117982	0.0632625	0.0308282	0.0103663	0.0642017	0.0623157	0.00819278	0.0245442	0.00849646	0.00698524	0.0374812	0.0277042	0.00946532	0	0	0	0.0174042	0	0.0128233	0.0924536	0.117875	0.0337358	0.0180019	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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