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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051568 ID=TCONS_00051568|Name=TCONS_00051568|organism=Clytia hemisphaerica|type=transcript|length=2417bp
AGTGAATTTATTTACGGTTCCGAAAGACATGTCAAGAGAAagtcgttctg
taaattactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTAT
TTCCGAACTCATCACACATCTTTCAAGCTCTCTAGTATACGTGGGAGAAA
TAAGATCAAATATTAAGTTATTTTTGGAGTAATAACACAGAAGCGGTCAA
GTTATTCTGTATCACAATGCACAGACTGACAGATGGGTGCGGAAAAACAT
TGGTTGTAAACAACATCGATGGAAGTAAATCAAGTTTTGCCCACAATTTT
TATCAACGAAGATTAAAGGTTCACTCTCGACATCTTAAAGAGAAACCAGC
AAGTTAGCCAAACCCTGGCAAATCCGATCGATCAGCATGATCAAGATCCT
ACATATCAATTACTGCTACCAATGGACCAAAAATGGATTCCCTCGATCAA
AAGAGAAAACAAGAGACAAACAAGGAATTGCAAGCTAAGTATTTCTGATT
CTTCTTATTTTCGTTATATAACTGAGCGTTCTCTTGCATAGACAATATCA
ACAAAGTTTGTGTTAGGAGATATAGCTCTCTTGGAAAAACTCATAATAAC
AAAAACTCTACAgggaagatttttttttgtcatctaaATCAATCTCGAAT
GCCTTGTAGGAACTTATGTTCTTGCNTTAGGAGATATAGCTCTCTTGGAA
AAACTCATAATAACAAAAACTCTACAgggaagatttttttttgtcatcta
aATCAATCTCAAATGCCTTGTAGGAACTTATGTTCTTGCAGGAAATCAGT
CATCAGTGTTAAACTTAATGGGGATTTCTTTTATCAAAGTTGTTTTGCAT
TGTGACAAGGAAATATAATAGTGACATTTTAAATAATGATGTCAGAAATT
TATGGCCTCGTTAATAAGGAGATACAATTATTAGCAAACTGCTTTTACAC
TTCGAGCTTTTGAATTCAAATTAACAAAGGAACAGTGTGCTCTCTCGTAC
ATAGATAATATGGCATCACCAAGAATTGaTGGACTACAAAATCAAAGCGT
AATCAGATGTTAAGACGTTGAAAAATCGAAATCATACAGCTCCGTTAGAG
ACGACACAAAGAAAGTGTTTGATAAAACGAGAAAAGGATGTGTTGTTCAC
AATTTGAGGTCAGGTGGTGCTTCAGCTGCGGGTAATCCTGGAGTGTCGTN
AagtcgttctgtaaattactaatttgaaagatttttgcgtGCTAATAAAA
ATGGTAGCTATTTCCGAACTCATCACACGTCTTTCAAGCTCTCTAGTATA
TTCTCTAGTATATTTTATGCTGTGAGGGTGCAGcaagagtaatatatttt
atgctgTGAGGGTGCAGCAAGAGTAATGTATTTTATGCCGTGAGGGTGCG
Gcaagagtaatatattttatgctgtgagggtgcagcaagagtaatatatt
ttatgccgTGAGAGTACGGcaagagtaatatattttatgccgTGAGGGTA
CGGCAAGAGTAATATNCGAGGCCCTTACGGTTTCCTCTACGACAGCCCAG
CTAAAATTTGAGACAGCCTGGGCACCCAATTTTGACCACCGGGGTCTGGA
GGTTTTTGTCCGGGGGGACTTGATCAATCCGTTGTCTAAGTCAACAAGAT
AGCATGAAGATAACGGCTTCTATAAAAAAGCTCAAACTAAGTgaatttga
tatgaaaattttaaaagaagtgCCTAAGAGGACCTCAATTTTTTAATATC
GGTTATTGCTGTAAAGTAGGTGGTATTTATTCCATTTTGAAAGTAATATT
TTAATTGGATTGATCCCACAGGGATTGGTAAAAGgaaagtagtttttttt
tttttttatcaagaggAAAGTAGGGTATTTTTTCTAAAGGAAAGTAGCGT
TTTATATCAAAGGGAAAGTAGTGTACTTTATCAAAATTAGGTTTATTTAG
GACTTCAAGTATATTGACATTGATAACTGCTGTCTAACTTTTAtcgataa
cttcaattttgacGGTAGGCAAAGTACCATTTTATTTCTCTATATCCCAG
AGGAATTGGTGTATGAAAAGATGTATAATTTCGTAGAATTAGGTCGTTTT
AGGACCTCGAGTATCGGTAATTATTGTAAAGAATATGGTGTTTATTTAAA
TTTGACAGTAGGCAAAAGTAACATTTTATTTCAAAGGAAAGTAGTGTTTT
TTATCAAGGTGTATAATTTCGTAGATTAAGTTTCGTAGAATAATTTTTCG
TacagtatttatttttttatcgtaTTCCAGGTTGCCACGGGCCTTTTTCC
CACGAGAGCCTTGAAACGCCTAACTACTAAACTAAATAAAAGGGTACAAG
CCTGTCTCAACAAATTATCTCGTTTTCACGTTCTTCATTTTCTTAGATTT
TGCTTTTAAGGCCTTTA Run BLAST on NCBI transcript from alignment at scaffold_202:1102636..1106388+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051568 ID=TCONS_00051568|Name=TCONS_00051568|organism=Clytia hemisphaerica|type=transcript|length=3753bp|location=Sequence derived from alignment at scaffold_202:1102636..1106388+ (Clytia hemisphaerica)
AGTGAATTTATTTACGGTTCCGAAAGACATGTCAAGAGAAagtcgttctg
taaattactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTAT
TTCCGAACTCATCACACATCTTTCAAGCTCTCTAGTATACGTGGGAGAAA
TAAGATCAAATATTAAGTTATTTTTGGAGTAATAACACAGAAGCGGTCAA
GTTATTCTGTATCACAATGCACAGACTGACAGATGGGTGCGGAAAAACAT
TGGTTGTAAACAACATCGATGGAAGTAAATCAAGTTTTGCCCACAATTTT
TATCAACGAAGATTAAAGGTTCACTCTCGACATCTTAAAGAGAAACCAGC
AAGTTAGCCAAACCCTGGCAAATCCGATCGATCAGCATGATCAAGATCCT
ACATATCAATTACTGCTACCAATGGACCAAAAATGGATTCCCTCGATCAA
AAGAGAAAACAAGAGACAAACAAGGAATTGCAAGCTAAGTATTTCTGATT
CTTCTTATTTTCGTTATATAACTGAGCGTTCTCTTGCATAGACAATATCA
ACAAAGTTTGTGTTAGGAGATATAGCTCTCTTGGAAAAACTCATAATAAC
AAAAACTCTACAgggaagatttttttttgtcatctaaATCAATCTCGAAT
GCCTTGTAGGAACTTATGTTCTTGCNTTAGGAGATATAGCTCTCTTGGAA
AAACTCATAATAACAAAAACTCTACAgggaagatttttttttgtcatcta
aATCAATCTCAAATGCCTTGTAGGAACTTATGTTCTTGCAGGAAATCAGT
CATCAGTGTTAAACTTAATGGGGATTTCTTTTATCAAAGTTGTTTTGCAT
TGTGACAAGGAAATATAATAGTGACATTTTAAATAATGATGTCAGAAATT
TATGGCCTCGTTAATAAGGAGATACAATTATTAGCAAACTGCTTTTACAC
TTCGAGCTTTTGAATTCAAATTAACAAAGGAACAGTGTGCTCTCTCGTAC
ATAGATAATATGGCATCACCAAGAATTGGTAAGGTAGAAGCAATAAGAAA
AGGTACAATATCTGGCAAACCTCGTTTACaagaaatataacttttgaGAA
TAACATGGATTGCTAGAAAGCTTAaaaggaatttaattttttttttcttc
atatttttggaaataccTAAATCACGTCATTTGTTtacagaaaatcaaat
ttattttaatgCAATGCGTACGTTGTTAGGGGAATAAGTCGAGCCGTCTG
TTTGACGTTAAAGTGTtcagaaagaaattggaaaaGTTCTTGCTTTTCTT
GATAGGAGTGTAGCCATAACTTTCTATCCATAAATGGTTTAACCAAGAGA
CAGATATcattaaaaagccatttttgaGGGAGCAAAACTATGTTTGAACT
TTCCCAAAGAAGTGAGTGAAAATGAGTTTAGagtcgatttaaaaaaaaaa
gaaaaaaaaaaaaaaaaattttaatggaATAGgctgaaaacctcaaattt
aGTCCACGAAAAACTGAACCCTTCCTGAAATCAAAAGTGATTTTacgatc
ttcaaaattttttctcgTTTGCGAAATATCAAGCTTTAAAGTCGATGTTT
TAAGGTTTATCAcagtttatcaagagttattgatttgattcttataaagt
aggtgCTTTTAATAAATCAGATATGCTGACATTGTGCACAattatttatt
aatttgatGTTCGATCACGTTAGTTTTTAGCGATATTCTTTACAATATTA
GAGAATGATTAAATGTTTATTACACCGTGTCAACCACTAAATTTTATTCC
GTACCGCCAAAGCCagtatcgtaatactttcgctaggcggcgaaattaaa
aatagaCAGATTGGACAAAAGTATATACCGAAGTAAACTCGTTGCCTTCT
AAAGAAAAGCATGTAACTTTCATTCTAATGTTTCAATTTGAATCTGGGAA
GTCCTTTCCGGTGTATGAAGCCTTACGAACTATTTATCATCCTATTTCGG
GTTACGCGATCGGGTCATTTTCAACTGTAAGGCACTATTCGAGGGTTTTT
TAATGCTCCCCGTCTTCTACCCCCAAAAGGATTAAGGGTTTAGAGgtgaa
gatttgaagaaaaattttttgaaaaattatcagTGTATATTCTCTAATAA
CCTAAatgccaaaagtttcaaagattttgcgtaaaatactttttttttct
tgattatttCCATTTTAATCTAAAGTGGTAGACGGATGTCTGACAGGGAA
GGCCATTAGGTAAATGTTGTAAGGATGTATTCTGATATCTGCCTGGTTAA
GGGGCTAGAAAGGAATCTCCAAATGGCAAAgatggaaattcttttttttt
tttctaatttttagaTGGACTACAAAATCAAAGCGTAATCAGATGTTAAG
ACGTTGAAAAATCGAAATCATACAGCTCCGTTAGAGACGACACAAAGAAA
GTGTTTGATAAAACGAGAAAAGGATGTGTTGTTCACAATTTGAGGTCAGG
TGGTGCTTCAGCTGCGGGTAATCCTGGAGTGTCGTNAagtcgttctgtaa
attactaatttgaaagatttttgcgtGCTAATAAAAATGGTAGCTATTTC
CGAACTCATCACACGTCTTTCAAGCTCTCTAGTATATTCTCTAGTATATT
TTATGCTGTGAGGGTGCAGcaagagtaatatattttatgctgTGAGGGTG
CAGCAAGAGTAATGTATTTTATGCCGTGAGGGTGCGGcaagagtaatata
ttttatgctgtgagggtgcagcaagagtaatatattttatgccgTGAGAG
TACGGcaagagtaatatattttatgccgTGAGGGTACGGCAAGAGTAATA
TNCGAGGCCCTTACGGTTTCCTCTACGACAGCCCAGCTAAAATTTGAGAC
AGCCTGGGCACCCAATTTTGACCACCGGGGTCTGGAGGTTTTTGTCCGGG
GGGACTTGATCAATCCGTTGTCTAAGTCAACAAGATAGCATGAAGATAAC
GGCTTCTATAAAAAAGCTCAAACTAAGTgaatttgatatgaaaattttaa
aagaagtgCCTAAGAGGACCTCAATTTTTTAATATCGGTTATTGCTGTAA
AGTAGGTGGTATTTATTCCATTTTGAAAGTAATATTTTAATTGGATTGAT
CCCACAGGGATTGGTAAAAGgaaagtagtttttttttttttttatcaaga
ggAAAGTAGGGTATTTTTTCTAAAGGAAAGTAGCGTTTTATATCAAAGGG
AAAGTAGTGTACTTTATCAAAATTAGGTTTATTTAGGACTTCAAGTATAT
TGACATTGATAACTGCTGTCTAACTTTTAtcgataacttcaattttgacG
GTAGGCAAAGTACCATTTTATTTCTCTATATCCCAGAGGAATTGGTGTAT
GAAAAGATGTATAATTTCGTAGAATTAGGTCGTTTTAGGACCTCGAGTAT
CGGTAATTATTGTAAAGAATATGGTGTTTATTTAAATTTGACAGTAGGCA
AAAGTAACATTTTATTTCAAAGGAAAGTAGTGTTTTTTATCAAGGTGTAT
AATTTCGTAGATTAAGTTTCGTAGAATAATTTTTCGTacagtatttattt
ttttatcgtaTTCCAGGTTGCCACGGGCCTTTTTCCCACGAGAGCCTTGA
AACGCCTAACTACTAAACTAAATAAAAGGGTACAAGCCTGTCTCAACAAA
TTATCTCGTTTTCACGTTCTTCATTTTCTTAGATTTTGCTTTTAAGGCCT
TTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051568-exon-scaffold_202-1491911889:1102636..1103663 | TCONS_00051568-exon-scaffold_202-1491911889:1102636..1103663 | Clytia hemisphaerica | exon |
| TCONS_00051568-exon-scaffold_202-1510915933:1102636..1103663 | TCONS_00051568-exon-scaffold_202-1510915933:1102636..1103663 | Clytia hemisphaerica | exon |
| TCONS_00051568-exon-scaffold_202-1575043694:1102636..1103663 | TCONS_00051568-exon-scaffold_202-1575043694:1102636..1103663 | Clytia hemisphaerica | exon |
| TCONS_00051568-exon-scaffold_202-1491911889:1105000..1106388 | TCONS_00051568-exon-scaffold_202-1491911889:1105000..1106388 | Clytia hemisphaerica | exon |
| TCONS_00051568-exon-scaffold_202-1510915933:1105000..1106388 | TCONS_00051568-exon-scaffold_202-1510915933:1105000..1106388 | Clytia hemisphaerica | exon |
| TCONS_00051568-exon-scaffold_202-1575043694:1105000..1106388 | TCONS_00051568-exon-scaffold_202-1575043694:1105000..1106388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:1102636..1106388 + |
Blast
The following BLAST results are available for this feature:
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