TCONS_00051558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051558
Unique NameTCONS_00051558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051558 ID=TCONS_00051558|Name=TCONS_00051558|organism=Clytia hemisphaerica|type=transcript|length=1789bp
TTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaa
acattcgaatactttgatgttttcaatcaGCTCCAAGGTGGATCAACGAT
CACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCA
TCCGGTAACAATACGCGAACCTCATCACTCAAACATCAACATAACAATCC
AAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCA
AAAGTACAGAAACGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCA
CCACGTTTGAAACATACGTTAATCTTTATAtttcgttttgttttgattac
gTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTT
CGGTTAATATtgcgaaaattgaaaagtttgaaactgattttcaaagacat
ttacataaaatttcagaaaatgatAAACTAAAGAATGAACAGTCTGCACC
TTCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAA
AGGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGGatcaagatttt
caaaagaagctGAAAGAATTCAACAATACAGTTCAGAAATATAGactgaa
GCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGA
AACATATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGAT
TCCTCTGATGGAAAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGT
AAAGCAAGGACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATC
CTGGAAAAATTGTAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAA
GGTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAA
ACCAGGTGCTGATGCAAGCTGTgattccaataaaaacaacaaagatttga
aaacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAAC
AAGATATACTCAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGG
TGGTTCCAACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAAC
CGAGCCAGTGGTGGTGGTTCTAATTATCTGTGTCTCCCAGAGACACCATC
ATACTCTAAAGtacaaaaatttaaacaaagtGATGCGTCTGAAATTGACA
TTCAAATTGGGAATGATATATTCTGTTCAGTTTGTGAGAGAATTGGTAAA
AGTAGTACTATTATGTATCCAGCATCGAATCTATGTCCTGAGGGATGGGA
GTTAGAATATACAGGAACCCTGGTCACGCAGAAACAAACTAAACGAACGG
AGTATGTTTGTCTGTCGCAAGAAGTGACTTCAAAGCTTTGGAGATCGAAT
CTGGGTATGACAACAGTTTCAGAACAAGCATGTAAGATATTGAACTGTGG
ACCGTATGAggcgaaaaagaatttgaattgcGCTGTGTGCACGCAATAAA
TTATTTTACGAATGAATGCGTGAATGATGGAAAACATATGTTTTGCACAG
AGAAAAACATCGGCCAGAGCTGCAAGATGTTTGGAAAatttctctttatt
tttttatattaatgTAATATAGTCAAAGTATAGATTTAAGTCAAATTATT
TGATTATTTAAGAGAAAAATGTATAAATTAGTAGATATTTTAAGGTATTG
TCCAAAGAAATTCTTGAACTTTATTATTTAGTATAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00051558-protein

>TCONS_00051558-protein ID=TCONS_00051558-protein|Name=TCONS_00051558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
FKSILLKTQVQPNFPTKHSNTLMFSISSKVDQRSLTMSLSNHDRRMSDQS
SGNNTRTSSLKHQHNNPRELKVEYSAVSQKATVKSTETVNDTQVIYVYCS
PRLKHTLIFIFRFVLITYCVAVPVFVYLLHQKSSVNIAKIEKFETDFQRH
LHKISENDKLKNEQSAPSSSTSTRKRRNAELAQKEFDKSYKQPGMKDQDF
QKKLKEFNNTVQKYRLKLSELEPAEKWLQEIYMKHISTNLDSTDCNCKKD
SSDGKECASKECDCSKVKQGPPGPPGRQGEQGDPGKIVKVPTLRGPQGLQ
GSRGPKGDPGDIGPQGKPGADASCDSNKNNKDLKTTYIRWGSKECGKDAN
KIYSGYMGGASNRASGGGSNYLCLPEXHGWRFKPSQWWWF
Run BLAST on NCBI

transcript from alignment at scaffold_202:1066350..1071280+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051558 ID=TCONS_00051558|Name=TCONS_00051558|organism=Clytia hemisphaerica|type=transcript|length=4931bp|location=Sequence derived from alignment at scaffold_202:1066350..1071280+ (Clytia hemisphaerica)
TTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaa
acattcgaatgtaatgACTTCTCTTAATCTTTTAAAATCTGTGTATACTT
CTATTTTTCCTTATATATTTAAGACTTTTGTCAATCGACGAAGCTGACAT
TTTCAAGGAGCTTATTAATTCCTTTCATTTAGactttgatgttttcaatc
aGCTCCAAGGTGGATCAACGATCACTAACCATGTCGCTAAGCAACCACGA
TCGCCGGATGAGTGATCAATCATCCGGTAACAATACGCGAACCTCATCAC
TCAAACATCAACATAACAATCCAAGAGAACTGAAAGTTGAATATTCAGCC
GTCAGTCAAAAAGCAACCGTCAAAAGTACAGAAACGGTCAACGACACTCA
AGTCATTTACGTTTATTGTTCACCACGTTTGAAACATACGTTAATCTTTA
TAtttcgttttgttttgattacgTACTGCGTTGCCGTTCCCGTATTTGTG
TATCTTCTACATCAAAAAAGTTCGGTTAATATtgcgaaaattgaaaagtt
tgaaactgattttcaaagacatttacataaaatttcagaaaatgatAAAC
TAAAGAATGAACAGTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGA
AGAAACGCTGAATTGGCTCAAAAGGAATTCGACAAGTCTTATAAACAACC
AGGAATGAAGGatcaagattttcaaaagaagctGAAAGAATTCAACAATA
CAGTTCAGAAATATAGactgaagtaatttttttgaatttaagtGAATTTA
AGTGATcaagatttcaaattaaaacgGTTATCATTAACTGTTACCATTTT
AAAATCAGTAAGGAAAATACCCCCTTTATAATGACCCCCCCTGAGATCAA
TGTTGTGAAGGTTTGAGCTGTTACAGAGAAGTTGGTTTGCTTTAAAACAT
AGATTTTTTAGGGGTACCCCTCCCCTTCTTAACTTTGCTGTCAATATATT
AACTGACAGATTGTAGTAATTTTAAACCTTAGTCACAATTATTTGGAATT
CTAGTCTTTATTGAGCCTTTATTagccaaattcaatattttcttcATTCA
GGCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATG
AAACATATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGG
TAAAAGATATTATCACTTAACGAACTTTCAGGCACCTTTATATATTGGAC
CCTTATTTAACGCCGGTTTTTTATGCCGCTGCCTGATTTTAAGCTTAGAT
CTATTATAGCCGTAATTGAACAACGAAAGCTGAAAGCTATTCTCAATATC
ATTTGTGAGTTAGCtgttaaaagttttattgaaaacaaCTAAAATTCTTG
CAGTTTAGAAAATGGGTCGAAGAGTGGTTAATTTTCATCTTACTAGGAAA
AAGATTTAATGATAACACAATATTTTATCCCTTTATTACCACCAGGCAAT
AAATTAAGGCCTGCGCAGATGCATCCAACATTTGATCTAAGATTTCGAAT
TCTTTGTTGGACGAGATGTTGGATGAAAGTCACGAAAAGTTggatgaaaa
gtcatttgcgcaaaaatgtcaaaaaaattttgatccaACATGATTACGCA
AATACCAAAACATGAaagcaacatgaaagtggcgtCAATCTCATAAAAAT
GTTAGATGAAATGTTTGGTAGCGATCAAACTTTATACAATACGTTTTCCA
ACATTATTATTAAAAAGTTGCGATTTTATGACTTGCGCAAATGAacccaa
catttcatccaacaaatGTTGAATCCGATATTGGATgcatttgcgccggc
ctttaATGTCAACCAGGGTCGATAGTATATTACTTCTGGTCTGTCCAGCA
TCAGTTAATTATATCAACCATGCAcgttgaaatgaaaatattgattgTTC
ACAGCAAATTTTATCATGCATTAATCTCTGCTTTCACGTTTCAGAAACAG
ATTCCTCTGATGGAAAAGAATGTGCATCGAAAGGTACTGAGAATTATTTC
CTTATTTCCGAGAACATCCTGTTTCATTCATAAGGACCAGCTTATGCTGG
CGAAGATATTCTTCTTATGGAGCAAAAATCACccaataaatttaaaattg
tatATTGTCTCCTACAACCTATCCTTCATTCCAGGACATAATTGTAGAAA
CACATGCTTGTAAAATCTCCTTCCACCTAAAGGGGACAGAGTAAAAGTGT
ATTTTTGAGGGGTTGCTTCATTTTCCCCGATTGTAGTTTGTTTCATGGGC
ATATATTTTAACCTCATTTTATAGAATGCGATTGCTCGAAAGTAAAGCAA
GGACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCCTGGAAA
AATTGTAAAGgtaatgatttttgaaattattgaaatCATTCCTTTTCTGT
TTTGAAGTGACGCTTCTCATACGGTACCGAATATCTTACCACATCTACAT
CTTATTTTATGCAACGAGCTTCCCTATCCGTTTTACTGGGGACTACCTAT
AATGGAGCGTAACTTCAACGTTCGTAGCCGAAAAAGCCTAGAGAAGCTCA
GTGCTAAAGATGTCTGTATATATTTGACATTTAGTCAGACGGAATTGAAT
GACATTCAAATCACAAGTGTAATCGTCCGCCATACCacgtattcaatttt
tttaaacaggtgtcaagtttttgtttgaactattcttcatttttactgtt
ttttaaatatttcctcagGTACCGACGCTGAGAGGTCCTCAAGGTTTGCA
AGGTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAA
AACCAGGTAAGAAGCCAACCTTCCTCAAATTAAGGAATTTATGATCATTG
TTGCCAAAACCATATCATATTCATTTTCCCATATTATGTCTTCCGAAAGG
TGAAACAAGAAAGATATGTTAAAATGTAACCTGAAGTTCCTGGCACTGTT
TACTTTGTTTCTAACGACCCTGCCGATGCACCGGACTGATTCGTGTGTGG
TCCGATATTTatattgtccggtggtaaaatgTTTTCCGTGTCCGGTGCTT
CCGTAACTCCGGTGTGTTGGTTGCTCCTGTTCAGCCTTTACCTTtaaggc
tggtctccactttcgcgtgaAATAGGCGACAGTTTTTGCGAGAATAAAAG
ATTACGTTAtgaaaaagtttcgcgcgaacaaaaaaaaagttgaaggatgt
tctacttttttcatccgttacgtcaatttcgaccaatagaattgcttcat
ttttgaaCCGACCAATggccttacaaaaacgtcaaaaagttttcactcgt
gtcgcgcgaaagtggagatcGGCCTTTATACTACTCGTTAATTTATGCTT
CAATGTATGTTCATAGGTGCTGATGCAAGCTGTgattccaataaaaacaa
caaagatttgaaaacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAA
AAGATGCCAACAAGATATACTCAGGTTTGTTGACAAAAACCTTCCTTTTA
AAAGATATTCCATATTAATATTGTTGTATACGTTTTTAATTAATTGtatc
ttatcggggaaaaaagaCCAGGTTTGATTAcattatcggccctttttacg
ccggcccttattgacgttatttttgggctcgtggcgtaataagggccggt
gttaaattagggccggcgtaaaaagggccgataaggtagtcgGATGAAAA
CTTGGACGGGGAAAATTCGTCAATTAGAgacattttcgtcactttcatCC
GCCATCAAATTCTGCTTTTGATACTTCTGATTACTTTTGTACAGTTGTTT
AACTTTGTCAAGACCAACTCCGAAGTTTGACTTGGCCGACCAAACGGCCT
TAATTTTTATGCAGTTAAAGAGTCCCTAAGGCGCCAGGGAAGTCAACgaa
ggctctaataagcataGAAAGCATTAGCAtagaaaaagtgaattttaatt
AAGAAAGAGGCATCATTTGGAGAGGTAAACACACGTATGATTTCATTCAC
TAAAATGTTTCGTATACTGAGATAGTCAATTAATCTTTAGcgagttaaac
catagtgtttttttacaagattcTGACATCGtggtaaaaaactaaaaatt
gtttatatcgacgaaatttttaaatttttaaatttttaaaacgttttatt
CATAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGTGGTTCCA
ACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACCGAGCCAG
TGGTGGTGGTTCTAATTATCTGTGTCTCCCAGAGACACCATCATACTCTA
AAGtacaaaaatttaaacaaagtGATGCGTCTGAAATTGACATTCAAATT
GGGAATGATATATTCTGTTCAGTTTGTGAGAGAATTGGTAAAAGTAGTAC
TATTATGTATCCAGCATCGAATCTATGTCCTGAGGGATGGGAGTTAGAAT
ATACAGGAACCCTGGTCACGCAGAAACAAACTAAACGAACGGAGTATGTT
TGTCTGTCGCAAGAAGTGACTTCAAAGCTTTGGAGATCGAATCTGGGTAT
GACAACAGTTTCAGAACAAGCATGTAAGATATTGAACTGTGGACCGTATG
AggcgaaaaagaatttgaattgcGCTGTGTGCACGCAATAAATTATTTTA
CGAATGAATGCGTGAATGATGGAAAACATATGTTTTGCACAGAGAAAAAC
ATCGGCCAGAGCTGCAAGATGTTTGGAAAatttctctttatttttttata
ttaatgTAATATAGTCAAAGTATAGATTTAAGTCAAATTATTTGATTATT
TAAGAGAAAAATGTATAAATTAGTAGATATTTTAAGGTATTGTCCAAAGA
AATTCTTGAACTTTATTATTTAGTATAAAGC

Coding sequence (CDS) from alignment at scaffold_202:1066350..1071280+

>TCONS_00051558 ID=TCONS_00051558|Name=TCONS_00051558|organism=Clytia hemisphaerica|type=CDS|length=9384bp|location=Sequence derived from alignment at scaffold_202:1066350..1071280+ (Clytia hemisphaerica)
TTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaa
acattcgaatactttgatgttttcaatcaGCTCCAAGGTGGATCAACGAT
CACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCA
TCCGGTAACAATACGCGAACCTCATCACTCAAACATCAACATAACAATCC
AAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCA
AAAGTACAGAAACGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCA
CCACGTTTGAAACATACGTTAATCTTTATAtttcgttttgttttgattac
gTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTT
CGGTTAATATtgcgaaaattgaaaagtttgaaactgattttcaaagacat
ttacataaaatttcagaaaatgatAAACTAAAGAATGAACAGTCTGCACC
TTCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAA
AGGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGGatcaagatttt
caaaagaagctGAAAGAATTCAACAATACAGTTCAGAAATATAGactgaa
GCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGA
AACATATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGAT
TCCTCTGATGGAAAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGT
AAAGCAAGGACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATC
CTGGAAAAATTGTAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAA
GGTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAA
ACCAGGTGCTGATGCAAGCTGTgattccaataaaaacaacaaagatttga
aaacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAAC
AAGATATACTCAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGG
TGGTTCCAACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAAC
CGAGCCAGTGGTGGTGGTTCTAATTTAAAAGCATTCTCCTCAAGACTCAA
GTGCAGCCAAATTTTccaacaaaacattcgaatactttgatgttttcaat
caGCTCCAAGGTGGATCAACGATCACTAACCATGTCGCTAAGCAACCACG
ATCGCCGGATGAGTGATCAATCATCCGGTAACAATACGCGAACCTCATCA
CTCAAACATCAACATAACAATCCAAGAGAACTGAAAGTTGAATATTCAGC
CGTCAGTCAAAAAGCAACCGTCAAAAGTACAGAAACGGTCAACGACACTC
AAGTCATTTACGTTTATTGTTCACCACGTTTGAAACATACGTTAATCTTT
ATAtttcgttttgttttgattacgTACTGCGTTGCCGTTCCCGTATTTGT
GTATCTTCTACATCAAAAAAGTTCGGTTAATATtgcgaaaattgaaaagt
ttgaaactgattttcaaagacatttacataaaatttcagaaaatgatAAA
CTAAAGAATGAACAGTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAG
AAGAAACGCTGAATTGGCTCAAAAGGAATTCGACAAGTCTTATAAACAAC
CAGGAATGAAGGatcaagattttcaaaagaagctGAAAGAATTCAACAAT
ACAGTTCAGAAATATAGactgaaGCTTTCCGAATTGGAGCCAGCTGAGAA
ATGGTTACAAGAAATCTACATGAAACATATCAGCACCAATTTAGATAGCA
CTGATTGTAACTGTAAAAAAGATTCCTCTGATGGAAAAGAATGTGCATCG
AAAGAATGCGATTGCTCGAAAGTAAAGCAAGGACCACCAGGACCTCCTGG
AAGACAAGGTGAACAAGGTGATCCTGGAAAAATTGTAAAGGTACCGACGC
TGAGAGGTCCTCAAGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCT
GGGGATATTGGTCCTCAGGGAAAACCAGGTGCTGATGCAAGCTGTgattc
caataaaaacaacaaagatttgaaaacaactTACATTCGTTGGGGGAGTA
AAGAATGTGGAAAAGATGCCAACAAGATATACTCAGGATACATGGGTGGC
GCTTCAAACCGAGCCAGTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGA
ANTACATGGGTGGCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTAATTTA
AAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaaacat
tcgaatactttgatgttttcaatcaGCTCCAAGGTGGATCAACGATCACT
AACCATGTCGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCATCCG
GTAACAATACGCGAACCTCATCACTCAAACATCAACATAACAATCCAAGA
GAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCAAAAG
TACAGAAACGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCACCAC
GTTTGAAACATACGTTAATCTTTATAtttcgttttgttttgattacgTAC
TGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTTCGGT
TAATATtgcgaaaattgaaaagtttgaaactgattttcaaagacatttac
ataaaatttcagaaaatgatAAACTAAAGAATGAACAGTCTGCACCTTCA
TCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAAAGGA
ATTCGACAAGTCTTATAAACAACCAGGAATGAAGGatcaagattttcaaa
agaagctGAAAGAATTCAACAATACAGTTCAGAAATATAGactgaaGCTT
TCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGAAACA
TATCAGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGATTCCT
CTGATGGAAAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGTAAAG
CAAGGACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCCTGG
AAAAATTGTAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAGGTT
CCAGAGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAACCA
GGTGCTGATGCAAGCTGTgattccaataaaaacaacaaagatttgaaaac
aactTACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAACAAGA
TATACTCAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGTGGT
TCCAACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACCGAG
CCAGTGGTGGTGGTTCTAATTTAAAAGCATTCTCCTCAAGACTCAAGTGC
AGCCAAATTTTccaacaaaacattcgaatactttgatgttttcaatcaGC
TCCAAGGTGGATCAACGATCACTAACCATGTCGCTAAGCAACCACGATCG
CCGGATGAGTGATCAATCATCCGGTAACAATACGCGAACCTCATCACTCA
AACATCAACATAACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTC
AGTCAAAAAGCAACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGT
CATTTACGTTTATTGTTCACCACGTTTGAAACATACGTTAATCTTTATAt
ttcgttttgttttgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTAT
CTTCTACATCAAAAAAGTTCGGTTAATATtgcgaaaattgaaaagtttga
aactgattttcaaagacatttacataaaatttcagaaaatgatAAACTAA
AGAATGAACAGTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGA
AACGCTGAATTGGCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGG
AATGAAGGatcaagattttcaaaagaagctGAAAGAATTCAACAATACAG
TTCAGAAATATAGactgaaGCTTTCCGAATTGGAGCCAGCTGAGAAATGG
TTACAAGAAATCTACATGAAACATATCAGCACCAATTTAGATAGCACTGA
TTGTAACTGTAAAAAAGATTCCTCTGATGGAAAAGAATGTGCATCGAAAG
AATGCGATTGCTCGAAAGTAAAGCAAGGACCACCAGGACCTCCTGGAAGA
CAAGGTGAACAAGGTGATCCTGGAAAAATTGTAAAGGTACCGACGCTGAG
AGGTCCTCAAGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTGGGG
ATATTGGTCCTCAGGGAAAACCAGGTGCTGATGCAAGCTGTgattccaat
aaaaacaacaaagatttgaaaacaactTACATTCGTTGGGGGAGTAAAGA
ATGTGGAAAAGATGCCAACAAGATATACTCAGGATACATGGGTGGCGCTT
CAAACCGAGCCAGTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGAANTA
CATGGGTGGCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTAATTTAAAAG
CATTCTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaaacattcga
atactttgatgttttcaatcaGCTCCAAGGTGGATCAACGATCACTAACC
ATGTCGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCATCCGGTAA
CAATACGCGAACCTCATCACTCAAACATCAACATAACAATCCAAGAGAAC
TGAAAGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCAAAAGTACA
GAAACGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCACCACGTTT
GAAACATACGTTAATCTTTATAtttcgttttgttttgattacgTACTGCG
TTGCCGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTTCGGTTAAT
ATtgcgaaaattgaaaagtttgaaactgattttcaaagacatttacataa
aatttcagaaaatgatAAACTAAAGAATGAACAGTCTGCACCTTCATCTT
CAACGTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAAAGGAATTC
GACAAGTCTTATAAACAACCAGGAATGAAGGatcaagattttcaaaagaa
gctGAAAGAATTCAACAATACAGTTCAGAAATATAGactgaaGCTTTCCG
AATTGGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGAAACATATC
AGCACCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGATTCCTCTGA
TGGAAAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGTAAAGCAAG
GACCACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCCTGGAAAA
ATTGTAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAGGTTCCAG
AGGACCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAACCAGGTG
CTGATGCAAGCTGTgattccaataaaaacaacaaagatttgaaaacaact
TACATTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAACAAGATATA
CTCAGGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGTGGTTCCA
ACTATCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACCGAGCCAG
TGGTGGTGGTTCTAATTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCC
AAATTTTccaacaaaacattcgaatactttgatgttttcaatcaGCTCCA
AGGTGGATCAACGATCACTAACCATGTCGCTAAGCAACCACGATCGCCGG
ATGAGTGATCAATCATCCGGTAACAATACGCGAACCTCATCACTCAAACA
TCAACATAACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTC
AAAAAGCAACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGTCATT
TACGTTTATTGTTCACCACGTTTGAAACATACGTTAATCTTTATAtttcg
ttttgttttgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTC
TACATCAAAAAAGTTCGGTTAATATtgcgaaaattgaaaagtttgaaact
gattttcaaagacatttacataaaatttcagaaaatgatAAACTAAAGAA
TGAACAGTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGAAACG
CTGAATTGGCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGGAATG
AAGGatcaagattttcaaaagaagctGAAAGAATTCAACAATACAGTTCA
GAAATATAGactgaaGCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTAC
AAGAAATCTACATGAAACATATCAGCACCAATTTAGATAGCACTGATTGT
AACTGTAAAAAAGATTCCTCTGATGGAAAAGAATGTGCATCGAAAGAATG
CGATTGCTCGAAAGTAAAGCAAGGACCACCAGGACCTCCTGGAAGACAAG
GTGAACAAGGTGATCCTGGAAAAATTGTAAAGGTACCGACGCTGAGAGGT
CCTCAAGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTGGGGATAT
TGGTCCTCAGGGAAAACCAGGTGCTGATGCAAGCTGTgattccaataaaa
acaacaaagatttgaaaacaactTACATTCGTTGGGGGAGTAAAGAATGT
GGAAAAGATGCCAACAAGATATACTCAGGATACATGGGTGGCGCTTCAAA
CCGAGCCAGTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGAANTACATG
GGTGGCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTAATTTAAAAGCATT
CTCCTCAAGACTCAAGTGCAGCCAAATTTTccaacaaaacattcgaatac
tttgatgttttcaatcaGCTCCAAGGTGGATCAACGATCACTAACCATGT
CGCTAAGCAACCACGATCGCCGGATGAGTGATCAATCATCCGGTAACAAT
ACGCGAACCTCATCACTCAAACATCAACATAACAATCCAAGAGAACTGAA
AGTTGAATATTCAGCCGTCAGTCAAAAAGCAACCGTCAAAAGTACAGAAA
CGGTCAACGACACTCAAGTCATTTACGTTTATTGTTCACCACGTTTGAAA
CATACGTTAATCTTTATAtttcgttttgttttgattacgTACTGCGTTGC
CGTTCCCGTATTTGTGTATCTTCTACATCAAAAAAGTTCGGTTAATATtg
cgaaaattgaaaagtttgaaactgattttcaaagacatttacataaaatt
tcagaaaatgatAAACTAAAGAATGAACAGTCTGCACCTTCATCTTCAAC
GTCGACTCGTAAAAGAAGAAACGCTGAATTGGCTCAAAAGGAATTCGACA
AGTCTTATAAACAACCAGGAATGAAGGatcaagattttcaaaagaagctG
AAAGAATTCAACAATACAGTTCAGAAATATAGactgaaGCTTTCCGAATT
GGAGCCAGCTGAGAAATGGTTACAAGAAATCTACATGAAACATATCAGCA
CCAATTTAGATAGCACTGATTGTAACTGTAAAAAAGATTCCTCTGATGGA
AAAGAATGTGCATCGAAAGAATGCGATTGCTCGAAAGTAAAGCAAGGACC
ACCAGGACCTCCTGGAAGACAAGGTGAACAAGGTGATCCTGGAAAAATTG
TAAAGGTACCGACGCTGAGAGGTCCTCAAGGTTTGCAAGGTTCCAGAGGA
CCGAAAGGTGACCCTGGGGATATTGGTCCTCAGGGAAAACCAGGTGCTGA
TGCAAGCTGTgattccaataaaaacaacaaagatttgaaaacaactTACA
TTCGTTGGGGGAGTAAAGAATGTGGAAAAGATGCCAACAAGATATACTCA
GGATACATGGGTGGCGCTTCAAACCGAGCCAGTGGCGGTGGTTCCAACTA
TCTGTGTCTCCCAGAANTACATGGGTGGCGCTTCAAACCGAGCCAGTGGT
GGTGGTTCTAATTTAAAAGCATTCTCCTCAAGACTCAAGTGCAGCCAAAT
TTTccaacaaaacattcgaatactttgatgttttcaatcaGCTCCAAGGT
GGATCAACGATCACTAACCATGTCGCTAAGCAACCACGATCGCCGGATGA
GTGATCAATCATCCGGTAACAATACGCGAACCTCATCACTCAAACATCAA
CATAACAATCCAAGAGAACTGAAAGTTGAATATTCAGCCGTCAGTCAAAA
AGCAACCGTCAAAAGTACAGAAACGGTCAACGACACTCAAGTCATTTACG
TTTATTGTTCACCACGTTTGAAACATACGTTAATCTTTATAtttcgtttt
gttttgattacgTACTGCGTTGCCGTTCCCGTATTTGTGTATCTTCTACA
TCAAAAAAGTTCGGTTAATATtgcgaaaattgaaaagtttgaaactgatt
ttcaaagacatttacataaaatttcagaaaatgatAAACTAAAGAATGAA
CAGTCTGCACCTTCATCTTCAACGTCGACTCGTAAAAGAAGAAACGCTGA
ATTGGCTCAAAAGGAATTCGACAAGTCTTATAAACAACCAGGAATGAAGG
atcaagattttcaaaagaagctGAAAGAATTCAACAATACAGTTCAGAAA
TATAGactgaaGCTTTCCGAATTGGAGCCAGCTGAGAAATGGTTACAAGA
AATCTACATGAAACATATCAGCACCAATTTAGATAGCACTGATTGTAACT
GTAAAAAAGATTCCTCTGATGGAAAAGAATGTGCATCGAAAGAATGCGAT
TGCTCGAAAGTAAAGCAAGGACCACCAGGACCTCCTGGAAGACAAGGTGA
ACAAGGTGATCCTGGAAAAATTGTAAAGGTACCGACGCTGAGAGGTCCTC
AAGGTTTGCAAGGTTCCAGAGGACCGAAAGGTGACCCTGGGGATATTGGT
CCTCAGGGAAAACCAGGTGCTGATGCAAGCTGTgattccaataaaaacaa
caaagatttgaaaacaactTACATTCGTTGGGGGAGTAAAGAATGTGGAA
AAGATGCCAACAAGATATACTCAGGATACATGGGTGGCGCTTCAAACCGA
GCCAGTGGCGGTGGTTCCAACTATCTGTGTCTCCCAGAANTACATGGGTG
GCGCTTCAAACCGAGCCAGTGGTGGTGGTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032661XLOC_032661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051558-exon-scaffold_202-1491911889:1066350..1066409TCONS_00051558-exon-scaffold_202-1491911889:1066350..1066409Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1066350..1066409TCONS_00051558-exon-scaffold_202-1510915933:1066350..1066409Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1066350..1066409TCONS_00051558-exon-scaffold_202-1575043694:1066350..1066409Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1066532..1067121TCONS_00051558-exon-scaffold_202-1491911889:1066532..1067121Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1066532..1067121TCONS_00051558-exon-scaffold_202-1510915933:1066532..1067121Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1066532..1067121TCONS_00051558-exon-scaffold_202-1575043694:1066532..1067121Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1067451..1067548TCONS_00051558-exon-scaffold_202-1491911889:1067451..1067548Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1067451..1067548TCONS_00051558-exon-scaffold_202-1510915933:1067451..1067548Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1067451..1067548TCONS_00051558-exon-scaffold_202-1575043694:1067451..1067548Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1068350..1068382TCONS_00051558-exon-scaffold_202-1491911889:1068350..1068382Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1068350..1068382TCONS_00051558-exon-scaffold_202-1510915933:1068350..1068382Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1068350..1068382TCONS_00051558-exon-scaffold_202-1575043694:1068350..1068382Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1068674..1068759TCONS_00051558-exon-scaffold_202-1491911889:1068674..1068759Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1068674..1068759TCONS_00051558-exon-scaffold_202-1510915933:1068674..1068759Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1068674..1068759TCONS_00051558-exon-scaffold_202-1575043694:1068674..1068759Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1069118..1069205TCONS_00051558-exon-scaffold_202-1491911889:1069118..1069205Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1069118..1069205TCONS_00051558-exon-scaffold_202-1510915933:1069118..1069205Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1069118..1069205TCONS_00051558-exon-scaffold_202-1575043694:1069118..1069205Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1069766..1069873TCONS_00051558-exon-scaffold_202-1491911889:1069766..1069873Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1069766..1069873TCONS_00051558-exon-scaffold_202-1510915933:1069766..1069873Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1069766..1069873TCONS_00051558-exon-scaffold_202-1575043694:1069766..1069873Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1491911889:1070555..1071280TCONS_00051558-exon-scaffold_202-1491911889:1070555..1071280Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1510915933:1070555..1071280TCONS_00051558-exon-scaffold_202-1510915933:1070555..1071280Clytia hemisphaericaexon
TCONS_00051558-exon-scaffold_202-1575043694:1070555..1071280TCONS_00051558-exon-scaffold_202-1575043694:1070555..1071280Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051558-proteinTCONS_00051558-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1066350..1071280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	7.09906e-09	0	0	0	0	0	0	0	0	0	0	0.000466171	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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