|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051515 ID=TCONS_00051515|Name=TCONS_00051515|organism=Clytia hemisphaerica|type=transcript|length=2331bpRun BLAST on NCBI protein sequence of TCONS_00051515-protein >TCONS_00051515-protein ID=TCONS_00051515-protein|Name=TCONS_00051515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MPRYDEGRSEGRSVLPTKSMMGGRLYVGKLPRDIRERDVEKEFRRYGRVKRun BLAST on NCBI transcript from alignment at scaffold_202:739621..749858+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051515 ID=TCONS_00051515|Name=TCONS_00051515|organism=Clytia hemisphaerica|type=transcript|length=10238bp|location=Sequence derived from alignment at scaffold_202:739621..749858+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_202:739621..749858+ >TCONS_00051515 ID=TCONS_00051515|Name=TCONS_00051515|organism=Clytia hemisphaerica|type=CDS|length=17316bp|location=Sequence derived from alignment at scaffold_202:739621..749858+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051515 vs. Swiss-Prot (Human)
Match: SRSF6 (Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 1.929e-39 Identity = 80/181 (44.20%), Postives = 121/181 (66.85%), Query Frame = 1
Query: 166 RLYVGKLPRDIRERDVEKEFRRYGRVKDISMKGNYCFIQYESSRDASDAVHDLHGRMLWGERMSVEHARTPKEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRSDYRILVKNLSTRCDFHDLKEVFGKAGSVLFADAHKKRVGEGLVEFDSRKDMERALKKLNGLEINGKPIQL 708
R+Y+G+L ++RE+D+++ F YGR+ ++ +K Y F+++E SRDA DAV++L+G+ L GER+ VEHAR P+ G G S R S + P+R++YR++V+NLS+RC + DLK+ +AG V +ADAHK+R EG++EF S DM+RAL KL+G EING+ I+L
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRR-----DRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178 The following BLAST results are available for this feature:
BLAST of TCONS_00051515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.