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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051502 ID=TCONS_00051502|Name=TCONS_00051502|organism=Clytia hemisphaerica|type=transcript|length=1227bp
acacatacataaactctgTAATGTTAAGAAAGGTGAaggctttgaaattt
tttcgacGTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCA
AACAATTCATCAAAACTTTCCATGGTGTCCGAGTCATCGACGAAAGGACA
TTTCACATCTTtcattttatacattttttccATTGTCGTAAATAAAGAAT
AGCAATTGAATTCAATAACAAAAACATGGAAAATCTCTGGTGCAATTACT
ATGTTCTGATCGTAATCTGAAAACCTAATGTGATTGGATTGATTCTCGAT
AAATGTGGTATAGTCAGCGTAATCTTTCACATGATTTAAAGAATGAAATA
CTATCTTTAATGGttctttgtttaactttttcCGTCTCTCGTTGACGTTT
TTTGTAATCCACATAGCCGGCGGCAGGTAGGCATCAGTTaaatgaaaagt
tttgatatgaATTTCCTCAATATCTTTCAAACAAGTTTCATTGAAGAGAT
GTTTAGACATTGGTAGCGATTGATAAAACTGATATCTGTTATAATCAGGG
TTCTTTATGAGATTGGTCAAATCTGCTAGATGCTGATGAAGATACATTTT
GGTTGTAAATCTACGGAAGTCTGTAAATAAGAGTCTGTGAATTGGCATCC
AGAATTCTGAAGGACATGATTCTTGATCACAAAGAACAATAACATTCCAG
CTATCATCTTGAAGTTTCTTAAGTGTGTTAGAAATTCTCATATCATACCA
CATATAGTCAGTCGCAATGAAAAATGTCTGATCGAAAGAATCATTGTTAC
TTGACATTAGTCCATCTTTATtattatgtaatttttcaaGGAGACTCAAA
ACCCTTTTCTCAATCGTCGGAAAGTAATCAAGAGCGGCTTCCAGCGGGTC
CTTCAACTGTCTCTCGACATGGTTGACCGTGTTTTTATCCCAACGTATAA
CACGATCTTCGTTCGGTAaatatatatttatttcaatGCAAGGATGATTC
TCTGCTATCTCTGGTAAATGATAGTTCAAAAACACATCACGCATTTCTCT
GATCATTCCATGCATAAAAATAGTGACATTTCTATTTTGAGTACAACTCA
GTGTTCGAAAGTCTGTTGATCTGTTTAGAATGTCAGTCCCAGTAAagcaa
aaaacttgaaaagttaATACGAGAAAAATAGTGAACATTTTTTAAGACAA
ATTTTCTCAACTAATCTTTCACTCTCT Run BLAST on NCBI transcript from alignment at scaffold_202:514342..520941+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051502 ID=TCONS_00051502|Name=TCONS_00051502|organism=Clytia hemisphaerica|type=transcript|length=6600bp|location=Sequence derived from alignment at scaffold_202:514342..520941+ (Clytia hemisphaerica)
acacatacataaactctgTAATGTTAAGAAAGGTGAaggctttgaaattt
tttcgacGTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCA
AACAATTCATCAAAACTTTCCATGGTGTCCGAGTCATCGACGAAAGGACA
TTTCACATCTTtcattttatacattttttccATTGTCGTAAATAAAGAAT
AGCAATTGAATTCAATAACAAAAACATGGAAAATCTCTGGTGCAATTACT
ATGTTCTGATCGTAATCTGAAAACCTAATGTGATTGGATTGATTCTCGAT
AAATGTGGTATAGTCAGCGTAATCTTTCACATGATTTAAAGAATGAAATA
CTATCTTTAATGGttctttgtttaactttttcCGTCTCTCGTTGACGTTT
TTTGTAATCCACATAGCCGGCGGCAGGTAGGCATCAGTTaaatgaaaagt
tttgatatgaATTTCCTCAATATCTTTCAAACAAGTTTCATTGAAGAGAT
GTTTAGACATTGGTAGCGATTGATAAAACTGATATCTGTTATAATCAGGG
TTCTTTATGAGATTGGTCAAATCTGCTAGATGCTGATGAAGATACATTTT
GGTTGTAAATCTACGGAAGTCTGTAAATAAGAGTCTGTGAATTGGCATCC
AGAATTCTGAAGGACATGATTCTTGATCACAAAGAACAATAACATTCCAG
CTATCATCTTGAAGTTTCTTAAGTGTGTTAGAAATTCTCATATCATACCA
CATATAGTCAGTCGCAATGAAAAATGTCTGATCGAAAGAATCATTGTTAC
TTGACATTAGTCCATCTTTATtattatgtaatttttcaaGGAGACTCAAA
ACCCTTTTCTCAATCGTCGGAAAGTAATCAAGAGCGGCTTCCAGCGGGTC
CTTCAACTGTCTCTCGACATGGTTGACCGTGTTTTTATCCCAACGTATAA
CACGATCTTCGTTCGGTAaatatatatttatttcaatGCAAGGATGATTC
TCTGCTATCTCTGGTAAATGATAGTTCAAAAACACATCATACATTGTCCA
GGTCATACCCCGTATAACCATAGTGACATTTCTATTTTGGGTACAACTCA
GTGTTTGAAAGTCTGTTGATTTGTTTAGAATGTCGGTCCCAGTAAagcaa
aaaacttgaaaagttaATACGAGAAAAATAGTGAACATTTTTTAAGACAA
GTTTTCTCAACTAATCTTTCACTCTCTATGTAtactttttgatgtgaaaa
gaAGTACATCTCTCTCTTTTTTATTAAATCATATTAAGGTCCTGCTTTTC
TACTTCGGAGTTGATTAATTTAAGTTAATTATAATCATATTTCAttccat
ggaggtataaagaaacaggagaagtatgctattgtaaccatgctagccct
acgattaaaaaagttacgaggtatgcatgctcataatctcatatatcgtg
catttttaataagctcttttgttgatagatgaaatcttattggctaactt
aagtattggaaataagatgagacgagattcattgtttctgacattggtgt
aaaaaaatatttggattaaaaaagggcctgtaaactttgcaatccttcat
caaatgacaagatttttcgatcaacattttcttcaaggtgaactctattg
cttaatactttcctccaaaattctccagcgactttttgtctacaaactgg
gtctgaaattgtgtgtgctcgttaaaaagaatttttattttctggctgga
gaaaatatcttttcaaaacaaaatttaatggatgacaaaattgaacgcaa
acttatttcgtggagccaAATTTTACTTAATTCTCGTATATTAGAAGGCT
AGAAATCTTCTATGCTGATAgtaagaatgttcagagcaaacttgagttct
actaaaaagtcgtatttcatcgggcgagcctagaatttcttttgatttat
tacataaaagaaatcaaatgactttaacgaccaattaccgaccaATTCAT
CTACTGTCTTTCTTTAATAACTCTATGGTCAGAGACTTCAAGATGATAGC
TGGAATGTTATTTTTCTTTGTGATCAGATGTCATATCCTTCAGAATTCTG
GATGCCAATAGACAGACTCTTATTTACAGATTTCCATAGATTTACAACCA
AAATGTATCTTTATCAGAATCTAGCAGATTTGGCCAATCTCATAAAAAAC
CCTGATTATAACAGATATCNtattctcgtatattagaaggctagaaatct
tttATGCTGATaataagaatgttcagagcaaacttgagttctactaaaaa
gtcgtatttcatcgggcgagcctagaatttcttttgatttattacataaa
agaaatcaaaagactttaacgaccaattaccgaccaATTCATCtactgtc
tttctttatacatAACTCTATGGTCAGAGACTTCAAGATGATAGCTGGaa
tgttatttttctttatgatcAGATGTCATATCCTTCAGAATTCTGGATGC
CAATAGACAGACTCTTATTTACAGAAGATTTCCATAGATTTACAACCAAA
ATGTATCTTTATCAGAATCTAGCAGATTTGGCCAATCTCATAAAAAACCC
TGATTATAACAGATATCAGTTTTCTCAATCGCTACTAATGTCTAAACATC
TCTTTAATGAAACTTGTTTGAAAGATATTGAAGAAATTCATATCGAAACT
TTTCATTTAACTGATGCCTGCCTACCGCCGGCTATGTGGATTACAAAAAA
ACGTCAACGAGAGACGGAAAAGGTTAAGCAAAGAACCATTAGAGATANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttggtagcacttttctgtgaaatatcaaatctccaa
cttattactgaaaacgggggtagtgatatgattgataacaCAGTTTTTTG
ATCATAatacattttacgatctctttaatgacctcatagccatactgttt
ttagtgttttgggaattagcaaagttctttaatgacttaaaaataacaaa
ggcaatataagttcatggttatcttttcaataaaaacaattatatactGT
GACTTCGTTCGAAATAATCGATTATACCAATaaaccaatgcaccaacact
taacactttccaactttcaattgcactgttaaaaaaagataacataaccc
ccgtttttagtaataagttggagatttgatatttcacagaaaagtgctac
caaggggtatttcgggtcCCATATCTTCCGAAGGACTTTTCTGTTTGCCT
TGAAATTTAACAACCTTCCTAACCTAAGGTTGAACTACCACTGGTGTAAA
AATGAACGTTATAGCATAAGTAGAAAAAAAGCTCAATTTTTGCAATAGCA
AATTTAACCGCTAAAAATTGCGAATTTTTCAACCAAAAATACATTCTAAT
ATAGCGCTTTTGATTCTCTGAAACAAGCAAAAAACATTTCCATAATTATA
TTTGACTATCAAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTATATC
TGGACAGACTTTAGTTGATGACTCGGACACTATGGAAAGTTTTGATGAAT
TGTTTGAACTCATAAACAGAGATATTTGTGCGGATAATTAATAACACGTC
AAAAAATATTCAAAGCCTTCACCTTCTTAATATTACCGAGTTTGTgtatg
tgtgtttttctgcgacagaGCCGGTAAGAGGTTCTGATTTGTCTTGATCC
taaccagctgaggacgacggtaaatcagtgCTTTGGGACCGTCCTCGAAC
CGCGGGTTATTCCTATAAATCACTTTAGTTATTCTACTGTCCTcgaaagt
gcaaatacataaactcgctattttcagttttaagcctaaaaatattcttt
tttctactgttttgtgattatttttgtgtaatttcctaactaaagaaaaa
aaaaaaattcgtgtcGGAACCGAATCCAAGGGTTAATTTGGTGGTGTGTT
CAGAATTTCATTGAAATACGACACTTACTTACTCATTTTATCAAGTATCT
CTCCGACTAAGAAAATATCTGAAAGGTTCCTAAAGGAATTGCTCTAATAC
ACGCTctcttataagaacatatacTATAACTATAACGTAACATAAAAAAT
TGGAagtataaagaaaaaataataaagaaaaattatttcatgatttttta
ttgcatgcaaaaaaaaatactgATAAGGCTTTTTCCGGACACACTGTATA
AATCTCAAAAGTTGTCGCGAGCCATAGTTCCATTTACACATTTTTCATTT
AttcataagaataaactatgtaagaacataaggttacGATAGcgaaaata
ttaacaaaacgttaaaataattttaaggtTCTGCGGACTCAAACACACCT
AATGTCTTaagaaaatacacaaaaatgctcacaaagtgatgaaaataaga
acatattattaaacagttaagaatattttaagaatttgcaaaaaaagacg
CAATTTCTTTAGTTaggaaattacacaaaaatacttacGAAATAGTACAA
TAAAGAATattcataggcgtagcgagataccctgcaaaatttatgtggga
gtgcagacgtttatgacatattcatgatcttttgataaaacaaagacaat
aattacagtgtcgtaaaaaccgctctcatccataaatcttgcagggtatc
tcgctacgcctatgaattatttttaggcttaaaactgaaaatagcaagtt
tatgtatttgcacttttgagaacggaagcgatttggaatatcccgcagtt
ctgacccgctaAATCGAGGATAGTAAAAGCGCTGATTTATTGTCGTCCTC
Aactggtcaggatctagacaagatccttaccgtctccgtcgcagaaaaac
acacatacataaactcggtaatgttAAGAAAGATTTGAACATTTTTCGAC
GTGTTATTAATTATCCGCACAAATATCTCTGTTTATAAGTTCAAACAATT
CATCAAAACTTTCCATAGTGTCTGAGTCATCAACGAAAGGACATTCCACA
TCTTtcattttatacattttttccTTCGGCGTANTGAGTCATCAACGAAA
GGACATTTCACATCTTtcattttatacattttttccTTCGGCGTAAACAA
ATGCGGTTTATAGTTGCAATCGAATTCAATAACACGAACATAGATAATCT
CTGGTGCAATTACTTTGTTCTGAGAGTAATCTGAAAACCTAATGTGATTG
GATtgattttcgataaatttgGCATAACCAGCATAATTTATTTTTACAGG
AtttttagaatgaaatacaatCTCTAATGGTTCTTTGTTTAACATTTTCC
GTCTCTCGTTGACGTTTTTTGTAATCCACATAGCCGGCGGTAGGTAAGCA
TCagttaaatgaaaaattgtgaTGTGAATTTCATCAACATCTTTCAAACA
AGTCTCATTGAAGAGATGTTTAGACATTGGTAGCGATTGATAAAACTGAT
ATCTGTTATAATCAGGGTTCTTTATGAGATTGACCAAATCTGCTAGATGT
TGATGAAGATACATTTTGGTATTAAATATATATAAATCTGTAAATAAGAG
TCTGTGTATTGGCATCCAGTATTCTGAAGGACATGATTCCTGATCACAAA
GAACAATAACATTCCAGCTATCATCTTGAAGTTTCTTAAGTGTGTTAGAA
AGACTCATAGCGTTAGACCACTTATAGAAAGTCGCAAAGAAAATTGTCTG
ATCAAAAGAATCATCGTTACTTGATATTAGTCCATCTTTATCATTATGTA
TTTCTTCAAGGAGACTTAAAACCCTTTTATTAATCGTCGAAAAGTAATCA
GGACTGGCGTATCCCATTTGGTCCACCATCTGTCTCTCGACATGGTTGAT
CGTATTTTCATCCCAACGTATAACACGATCTTCATTCGGCAAATATATAT
TTATTGCAATGCAAGGATGATTCTCTGCTATCTCTGGTAAATTATAGTTC
AAAAACACATCACGCATTTCTCTGATCATTCCATGCATAAAAATAGTGAC
ATTTCTATTTTGAGTACAACTCAGTGTTCGAAAGTCTGTTGATCTGTTTA
GAATGTCAGTCCCAGTAAagcaaaaaacttgaaaagttaATACGAGAAAA
ATAGTGAACATTTTTTAAGACAAATTTTCTCAACTAATCTTTCACTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051502-exon-scaffold_202-1491911889:514342..515376 | TCONS_00051502-exon-scaffold_202-1491911889:514342..515376 | Clytia hemisphaerica | exon |
| TCONS_00051502-exon-scaffold_202-1510915933:514342..515376 | TCONS_00051502-exon-scaffold_202-1510915933:514342..515376 | Clytia hemisphaerica | exon |
| TCONS_00051502-exon-scaffold_202-1575043694:514342..515376 | TCONS_00051502-exon-scaffold_202-1575043694:514342..515376 | Clytia hemisphaerica | exon |
| TCONS_00051502-exon-scaffold_202-1491911889:520750..520941 | TCONS_00051502-exon-scaffold_202-1491911889:520750..520941 | Clytia hemisphaerica | exon |
| TCONS_00051502-exon-scaffold_202-1510915933:520750..520941 | TCONS_00051502-exon-scaffold_202-1510915933:520750..520941 | Clytia hemisphaerica | exon |
| TCONS_00051502-exon-scaffold_202-1575043694:520750..520941 | TCONS_00051502-exon-scaffold_202-1575043694:520750..520941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:514342..520941 + |
Blast
The following BLAST results are available for this feature:
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