TCONS_00051484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051484
Unique NameTCONS_00051484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051484 ID=TCONS_00051484|Name=TCONS_00051484|organism=Clytia hemisphaerica|type=transcript|length=1502bp
AGCGGTgggacaatttttttctttctcgatTATCGGGTTTAATTAGATCT
ACAAATCAAATTTCGTTGCATCTAATCCTGATTGTGtatcttttttcact
ttcagTTGTTGAATTTCGCTGCTTTTATATTGGGCGTTGAAAAAATGGTA
CCAGTGTATCGTTTGTTTCTTCTGGTGATTGTCAGTCAACTTGCATTGGT
GGTACATTCTCAAGTGATCAGTGCAAGCTTGcgagaaaaaatcaagaaat
taaaaCGTACCCCACAGagatcatttttgaaatgGGGATATCTGAATACG
GACAGTTTTTCCGAGAGCATGGAGATACCAGCAGAAAatatcaaagattt
tcaaaattatgcTAACCTTCCCGAAACAGGTATTTTGGATGATGCAACCG
TTGACCAACTTTCAAAACCTCGATGTGGGTTACCAGAAAATGTCGAACAA
ATCAATGCTAGAAGAGGGAGACGGAGAAACAAAGGGAAAAAGAAGAACGC
GAACGAAACTGACGATGAAAATGACGATGATTATAATAGAAGTGGGAGAA
GTCGTAGATACCTCCAACAAGGAACTTCCTGGCTACCTCTATTTCAGAAA
ACTGGGAAGAATGAGTTAAAATGGACTTTGGAAAACTCAGGACGGACGTT
GGACTCATCCATCATCAAAATCAACCTTCGAAAAGCATTTGATTTCTGGT
CCCAAGTAACTAACCTCAATTTCATTGAAATCCCTGAATCACAAGTAGGC
GAACCAGGATTCGAGAAAAACGACATTGAAATTTTAGTGAGTTTTGTAAC
AGGGCAACATAATGACCCATATTGGTTTGATGGACCAGATGGTACTCTTG
CGCATGCGTTTTATCCGTTGACAAATGTCGGTTTAAGTGGTGACATTCAT
TTTGACGATGATGAAAATTATACTATTCAATCGAAAGATGGATATAATTT
CCTTTGGGTAGCTGTTCATGAAATAGGTCATTCCATTGGTTTAGAACATT
CTGATTTCGACGATGCGGTCATGTACCCTTGGTTTACTGCCTATGATCCA
GATTTGCAACTCAGCCTGGATGACATATTTGGAATCCAATCTATTTATGG
TGCAAAGGATGTGCCTCAAACTGCTACAACGACCACTGCAACCACaacta
caacgaccacccctacaCCAGAACCACCCCTAGTAATTACTGAACAAGAT
CTGATCGACACTACCGATACTTTCGAAGTCACAAAAACTCCATCAACAAC
GAGAGCAACGACTACTGCTACAACAACTACGACAACCACCACCCCGACca
ctacaacaacaacgaccatcCCAACCACGACAACGACTACCCCAACGACT
ACAACGACCATTCCTACTACAACCACGACAACGACTATCCCAACCACAAC
GATAACCACCACCCCGACCACAACAACGACCATTcctacaacaacaacga
ccatcCCAACCACGACAACGACTACCCCAACGACTACAACGACCATTCCT
AC
Run BLAST on NCBI

transcript from alignment at scaffold_202:194104..205879+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051484 ID=TCONS_00051484|Name=TCONS_00051484|organism=Clytia hemisphaerica|type=transcript|length=11776bp|location=Sequence derived from alignment at scaffold_202:194104..205879+ (Clytia hemisphaerica)
AGCGGTgggacaatttttttctttctcgatTATCGGGTTTAATTAGATCT
ACAAATCAAATTTCGTTGCATCTAATCCTGATTGTGtatcttttttcact
ttcagTTGTTGAATTTCGCTGCTTTTATATTGGTAGGTAAAGGTATACGA
GTCCTAATTATATTGACTTGTCACATTTTTAATGAGCGTacatttagaaa
aaaaagcgATTCTATTTTGACATTTGGGGAAGTTCACAATTTAAGAGGTT
GAGCCCTAATCAAGGGGTAAGGTATTATCATAGatttataagcccgaagg
gctagatgtcgggctttaagccatcgcaggtaaaaaaattgaatatcgga
aaaaatattgttgctattgttttcgaaaacccgcaaagcttctgtttggt
caatcactgaaattctattataatgtcacgtgacttaggtaggatttcct
atctAACCACGGCACGCTTTATAGCAATAGTTgtacatctagcccttcgg
gctttataaatctatgggtaTTATAGCCTTATGTCTGAAATTCGGTATAT
GGGCTTATTTTGAACATTGGGTTTGAAGTGTTCATATAAATATTGTAGGT
GTTGTGCATGACCTTATAATGGCttttcccagctgacacacaacgttgtt
tcaacgttcatctggcgttatatggacgttgtgaacgttagataaacgtc
aaaataacgttgtgtgccagctgggttttgATTTTACATGCCGTTTCCCT
AACAAATTCCAGGGCGTTGAAAAAATGGTACCAGTGTATCGTTTGTTTCT
TCTGGTGATTGTCAGTCAACTTGCATTGGTGGTACATTCTCAAGTGATCA
GTGCAAGCTTGcgagaaaaaatcaagaaattaaaaCGTACCCCACAGGTA
TATCATATCATCTCACTAAACTATGACATATATTCAGAAATAAAGTCTAT
Tcgcactaatctttgttttgcttgccattttttaagccaatgcttcaaat
tcaaaaaaaatgtctaCCGTTGAATAGAAACTTTAGAACACTataacttt
tgagaaaaataattcaaaaattttaggaaaatgaatatggaaattgaaga
aaataatgaacttttaacCATTGTGTATTAGAAACCTCATTCTGATTTAA
CTGTTTGTTTTCCGTTTATCTAGGATGAATTATACCATAATTCCTTTTCA
CCTTGAGGTTTTCAATCGAATGTTCACGTAATTGTTCCACTTCCAATTAT
CTTGCCAACTAttctgatatttttcttttcagagatcatttttgaaatgG
GGATATCTGAATACGGACAGTTTTTCCGAGAGCATGGAGATACCAGCAGA
AAatatcaaagattttcaaaattatgcTAACCTTCCCGAAACAGGTGAGA
TATTGAGCTTACATACCTCTATAGAAATATTGCACACGCTCATAGAACTT
GTTTTATCAGTTATGATGACTTTGCTGATTGCTTTATCAATTTATCCTAT
TCTTGTTGACAAAATTTCGTGAAATAAATCCatacgaaatttaatccact
taaggtatataATGTTTGTAAAATTGACAGATTATACTCATCCTCACACA
TAACTCCTCTTGTTCTTTTTTAATCCCCAATTTCCAGGTATTTTGGATGA
TGCAACCGTTGACCAACTTTCAAAACCTCGATGTGGGTTACCAGAAAATG
TCGAACAAATCAATGCTAGAAGAGGGAGACGGAGAAACAAAGGGAAAAAG
AAGAACGCGAACGAAACTGACGATGAAAATGACGATGATTATAATAGAAG
TGGGAGAAGTCGTAGATACCTCCAACAAGGAACTTCCTGGCTACCTCTAT
TTCAGAAAACTGGGAAGGTATAGTAATGATAATAATGCGCTGTAATCTTT
TTACTGAGAAAGCCTCATCAACTATTTCTCATAATATCTTGTAAAGACTC
ACCTAAAATTATAAAtactttaggtgtacaaactttcgcgagcagagact
ttcgcgattttcgcgaaatttggcccttttcgcgaaagtaaatggtaaAG
GGCCTGATCCAAGGAATCGAGGCTGTTCAAAGACAAATCACTGATGTCAA
AGCATTGAGCTATGGGAAAGACTGACGGAGCTTGTAATATGTTCTTTGCA
ACGAAGGAGGGAAAGATACGTTAGAGCATCCTAGAAGCCTTAGTTCCATA
TATTGCAATTGATTATGAAACAGAGAATAGGGGCATCTTCAGCTATTTCA
ATGAGAGACATGGAAGGAAGTGTTTCATTCCCCTGATAAAGAGAAGTCCC
ATTCAACGCCAAGTCTATGCCACAGATAtctataagcccgaagggctaga
taggcaactttaagctttcttcagcaaaaaaaagtgaagcaaaaatttga
ctttttaaatttcgtgccgatggataggatctagcattttaattgttttc
ggagcgcgagatcaaaaaaagtaggcggcaaacgctatttcacatctctc
aacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtcacgtgactttggtaggaaatccttccaaacctaggcttcac
ttttcgataaaagccgcaaatctagcccttcgggctttacagatctgtgt
tCTATGCATCCATTCGTATGTAGGGACCAAAATTGTTCAAATCATTACCC
AAAGATTTGAGGAATCttacaaaatgtaaaaaagccgaattcaaaagaaa
acttGATTGTTACTTGTGAAGTGTCCCAGATGAACCTCTTGTTTCAGGCT
ACACAAGCTTGAGGAGAGCTGAGACGAACAGTATTCCCGGAGGGGGCACT
ATGATTTGGCACAGGTCGTGTTCCGCGCGCCGCGCTTATGGGTAGgattt
ttcagcatcccaaaatgcactgtgaGAATCGATTTTTcaacaaatccaaa
aaaaactgATAAAGCAGAGtaaagctgggagcaaaccatcaaacattgtt
cttcaaacatcgtgacgtttcatgtttgaaatcgATGTTTTGCACACGTG
GCACTGGTTTCGACGATATGAGTGGATGTCACAGAGCGTCGAACTACTTG
CAAGTACTCCAAGTAGGTATCACAGCATTGTTATTGATTCGATGACCAAC
AGGAGaaagttttgggaaaaaaaCTTACCACTTTTCCAATCTTTCACACT
TTTACAATTTTCCTAACCAAAACTTTGTAAATGTTTGTAAAAATGAGGGA
TTTTCCATGGTAGCAACATGGTAGcacgaaatagaaaatatttccataat
tttttttcaagtaaaggtGACCTTGGAAAATCGTAATTTATGACTGCTAT
AATTTATTCTTtcatgaaatcgaaagtgaaagttctTTATTCAATTGCTA
TTAGAGGATGATACGCATAATTTTCGACCGAGTCTGGAATAATTATGACA
TCATAGATCCCATTGATTCGATgacaaattttaaacaaatgaGAGTTTGT
TTGTCATCGCAGCAACTTGAAATTGCTCGGATTTTCTGCGGTTTCTAGCG
TCTAATTCCGTCGACAGCCTTAATGATCTACTCTTAACATACTTATCGTT
ATATTTATTTACAAACGGATGTTTTCTTTGCTGCACTGTTAATTCTTAAG
CAGACAGACAAGCTTAAAATTTACCTAATGGTACCTTCATTTAGAAGTAT
TGCTTTAAATTCTTAAGAAttgtatttcaaatttaaaaaagaagctcAAG
AAATTGGAGTCTCAAATTCTCCGAAACGGCTATTTAATGGATATAGAGAA
TTTCAGGCCCGTAgcatccggggggggggggcacacaaaaaaacaaaaac
ataatcCTTTAATTAGATGCGTTTTCCAGCAATCGAGACACCTTAAATTG
TGAAATTATTTcgaaatatttctcaaaatgaaaatgcttcctacgggcCT
GAATTTACTGGGTCTTTTATCAAAATACTATTAAAAAATTCTACTCTCAG
TGACTGTGCTAAAATTTCTTCCGTCTCCGACAGATCCGGATACGGTGCGC
ATAATCGTGAGTTAAATCCCCGACTGAGGCACACCAAAGACTTCGTACTT
AGTACAAAAATCCtacttcccagctggcacacaacgttgtttcaacgttt
atctgacgtttacaacgtccatataacgttagatgaacgttgaaacaacg
ttgtgtgccagctgggttgatGTCTCTCTGCTTGGTGCTcagtaataata
aaaaaatgattagtCTCGACCATATTctatatttctatttggttgagttg
caggaggctttgaggtcTATTTTCGCAACTAATAGACGCTTTCGATGAGC
ACCCCGCAAGCaacttggactgactacccggTTCCCCTCACATGAAATGG
CTTGACCCGGGTGAAGGTtcacattcacttgccaagtgaactgctgcgag
tgggaattgaacttcagtcgcctgtgcagcaactaAGGTCAAGGACCACT
CTACCACAGCGCCTATAGTGAGCGAACGCGCTTAGACAATaatctacctt
atcggggaaaacttcgtcggggaaaagtgacgaaattttggccgattgac
gaatatttttccacgtcgaaaattttccccggccttaatgcgtttaccaa
ctaccagtaagtgacgaatatttttcccggACAAAGTTTACCCCGATAAG
GTACTAAATAATTTCAATATAATACTTCCATCTTTAGAATGAGTTAAAAT
GGACTTTGGAAAACTCAGGACGGACGTTGGACTCATCCATCATCAAAATC
AACCTTCGAAAAGCATTTGATTTCTGGTCCCAAGTAACTAACCTCAATTT
CATTGAAATCCCTGAATCACAAGTAGGCGAACCAGGATTCGAGAAAAACG
ACATTGAAATTTTAGTGAGTTTTGTAACAGGGCAACATAATGACCCATAT
TGGTTTGATGGACCAGGTAACGTTTCTTTCTCAAACAGATTGTCGTGTCT
Tagtataaaaagcaaaaagtttcataaaccgaaacttttaagattttcaa
gtttttggccttttttttcgcgaaagtgAATTTTGTTCATAAAGTAAAGT
TCGCAAAACTTAAAGCAGCTTATGTCCTCCTTTGATTGCATTAGAaaact
actcttgtctcccgaatagacggggggttcaaataagcagggggtaggaa
aattttctaaattctaataagcggtggggatggaataagagggggggtaa
tttgaagacagaatttttttaaactgatatcaatttcaacaacaaaaaag
aaactttaacaaataaacacgtaaaataagaaccaatactaacaaaaaga
aattttttaacaaaNATCACAAGTAGGCGAACCAGGATTCGAGAAAAACG
ACATTGAAATTTTAGTGAGTTTTGTAACAGGGCAACATAATGACCCATAT
TGGTTTGATGGACCAGGTAACGTTTCTTTCTCAAACAGATTGTCGTGTCT
Tagtataaaaagcaaaaagtttcataaaccgaaacttttaagattttcaa
gtttttggcctttttttcgcgaaagtgAATTTTGTTCATAAAGTAAAGTT
CGCAAAACTTAAAGCAGCTTATGTCCTCCTTTGATTGCATTAGAAAACTA
CTCAAGCTTTTCGTATTTGGAGAGTCTcttatgatgtcataatcagATAA
Ctcatcggccaaaacttagtcggcccttaatgactaaattttggtttggt
gactaaaattagggccgactaaaaatttgggccaactaaaaatttaaaaa
atggctaaaacttaattattagtcggctcttagtgactaaattttgacga
ggtgactaaaattagggccgactaataattaaggccgactaaaattaagc
ccgactaagttttggccgataaggtacccTCTTTTGGAAAGTGTGAATTC
AAACCGTCATATTGATATAAAGGCTTATAACTTGAGAGTTAGACAATGGT
TCTGTCAGCATTAGAAAGGTATATATAGCCTTAAATCTAGCATCCGGTAT
ATTGGCTCATTTGAGCATATAAACGTAGCGTTGGAAAGGTTAACACCTGT
GTCAATGTTAGCTATTTTCAAAGCTTAAACTCTTATACGCCTTCCAACTC
TTAATGGCGTGGTTTGCTTTCAAGGGGGGCTGGTATTAAATTTTCAGGGA
AAGGACGGTGAGCAAAGACGATATATAGTCGtccatcaactatcgacttt
gttttgcgtcGACTTCACTTTCCGTCACCCTCCATATCCTCCGAtatata
aactcgctaataaaaATGTGAATACAACGACTTCAAACATTTTGACATCA
TTCCTTCTTGGCTAATTCGAACCCAGCCTCCTCATTACAAGGGTTGAGGT
GTATTCGTACGCACTTGGATTTTCCTTCtccccctctccccccccccaat
attttgcaaagtaatttttttctactttaaaaaatttcatatataccgtt
tagaggggtaaaaagtcgaaaattttcttcgtcgcccaaccatggtggga
cATCTCCCCCCGATCTCTACTCACTATGTGCCTTCCTTAGTAGTAAAGGA
GTGAAGTTTGTTTCCCTAGAGGTCAAGCGTAATgagaactgatctttgtt
tttcagATGGTACTCTTGCGCATGCGTTTTATCCGTTGACAAATGTCGGT
TTAAGTGGTGACATTCATTTTGACGATGATGAAAATTATACTATTCAATC
GAAAGATGGATATAATTTCCTTTGGGTAGCTGTTCATGAAATAGGTAAGA
GACTCGACGATCTTATCGTTTACACATTATTActaaaaaaggaaataatt
cGGGAGGCGggttaaatttgaaaacggagTTCAGCTCGGGGCGGAGTAAA
Ctgtggcggaggtgtttacagtgttccaaaactctaccactacttttccc
gtaaaccgccctgacgccctgactttgcgcatatatattttcccgcgttt
actgaccctctaaatggacgatagcatcgtctagtaaGAGACAGACTCGT
GGTAGGACCTCAGAATATCATCTTGAAGACTTGTCTTTTATTCATCGGGC
TAGAATTCTAGATTTGGCTTAGAATAGAACTTGCTTACGATTGAACTATG
TCTTCTGATAATTCTTGATgtttcatataaaaatattgcCATCCATTTTA
AAATCTTGAGAGGACCCCCGGGCTGGATTTGGATTAGAATATCGAGATTT
CTCACTTACAATTGACTCCGACCTTGTCTCCGATTTGACTAAACTTGTTC
CCAAGGAAGGCGATCACATTAGTTATCATTTCGAAACGAGGTAAATATTG
TTCGACACGTGATTTATGTAAATGACTACTTCGTGacatgcaccattgca
atgtcttctgacattacatcatggacccaacaactgattggttgcaagtg
acgtattgattgattttacgtcATTTACAACCAATAAGCTATTGgatcca
tgatgtaatgtcagaagagattgcaatggtgcataccaTGAATTATGTCT
GTCTGTCATTTCTTTTCAGGTCATTCCATTGGTTTAGAACATTCTGATTT
CGACGATGCGGTCATGTACCCTTGGTTTACTGCCTATGATCCAGATTTGC
AACTCAGCCTGGATGACATATTTGGAATCCAATCTATTTATGGTAATTAT
TAACAGGTTTTCAACTTCAGTTgaagctagaatctgagaatgtctgtctg
tctatcTGTCTGTCTGTTTTTTAGgagcgtggtcacgagttttagcctca
aaacaAGCCTAAAAACTTTGGGGGAGGctggagatttaaaaaattccGAT
TCAGCTGAAAtcttgcacacttgttccttgggtgaatatctgggggtatt
ttttttcactttttcaaaattttgattttaaattttttaatttttatctt
atgtttacaattgggcctacgagtaatttaaaagatattgaagttaagcc
agtgcggttagcacttTCGACAGTTTTAGAAATATGGTCAAGCTATAAAA
TAAGAATTGATATATTCGTAAGAGAATTGAAGGCTCTATAAAAGCTAGAA
TAGCAATTCCCTCAGGCATATAATTTGTTGCTCTATAGATGAGCTCAAAT
TGTCGGAAAGGGTTGTGTTTAGAATTGATTGAAGTCGGTAACAAGCCTTT
TAGCTATATAAAAGCGATCTTCCTAAATTGACTTATACTAAGTTCGATAT
TTAAAGTTAGTGCCAATATAAGATAAATAAACCAGCtacgctggaaggtc
agcctaaattgctttaatatgattagaaagatatgttgttaataaaaatt
gatatgatttactaaaacgagagtaaaaaaatcatcaaattataCAGACG
AACAGCAACAAAAGGCTACATCAACAAcagattcaagaaaataaaaatcc
ttgcAAGGAAGTTAAATGCAAGGCATACTGTACTTATCAAAAACCACAAA
AAGTTTatacacttattattttttactaagcttagacttataattatatt
caagctcaagctggacaaaaaatcaaaaaagtttcaaaaacaaagatgcT
GTAAATCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTGGTGTCGTCCCAGAAAGACTGTAATTATTGT
ACTGTATTTTCCCTAACCTGAGCCTAAATATATATGCTTAAACgtgcaat
atttatctattaaaaaatattcaatccatttatatacatttattatttat
cattattagTCCAGAATGTATAAATGTTCGCCATCAAATCACAGTGAAAA
aatgcaagtctagaaaaacataatttttgtcaataatttgatgaagaata
ctTCAGCCGTTCTGAAATTTACACAGGAGCTGCACTTTAAATATATACTT
gattaatttccatttacgcttgatcctaattatctccaagtcaaaAAGAA
CTAATGCAAGTGTCTGCTTTCAAATCACAGTGAAAACttaagtctagaaa
aaatcatttttacgtcaataatttgatgaagaacttcggtctttctcaaa
ttcacataggagcggtactttaatatacttgatcNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtatctccaagtcggtccaaaaaaacaaacgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacg
taactgccagtgaaaaacgcaagtctagaaaaaaatcatttttgcgtcaa
tataaTTTGACGAAGAACTTCGTTCTTTCTTAAATTTACATAGGAGGTAC
TTtattaatatacttgatcaatttccatttacgctttatgataattatct
ccaagtcggtccgaaaaaacaaacgtaactaccagtgaaaaacgcaagtc
tagaaaaaaatcatttttgcgtcaatataaTTTGATTAAGAACTTCGTTC
CTTCTCgaatttacataggagctgtactttaatatcCTTgaacaatttcc
atttacgctttatcaatattatctccaattgtccagaagaacaagcatat
aaaatgtctataaatgtatcaaataaaaaaaaacgctcaagttcgagaaa
acattatttttgtgaataagAATAATCAGATAATTAAGCTGTGAACTGTA
ATATATATACACTCCATCAAATTCCAGCAATTGTTGGTGGTTACTCTATA
TtcaagtccaaaatgaaaaaatatgttttcatgctacaaaaTAATGAGGT
CTAGCAGGTAAAACAATAACtcacaattcaggaaaaaactTGAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATcggataaaaactttagaaatcggaataaaaaaaccaaa
ctcTTAAGTTGCGGCGGCTGGAAaaaagggatttgaagggtcatcgGGGC
TGACCAATTAATTTTCCTAGGATGAACATAGAAAATGCGACGTCGCGAAT
GCTACATAGCGGAAATGATTTCCAAAGCATCGCCCTTAAGGACAATTTTT
CATGGGGTCAAAAAAGGTTAATTTTCCAATGAGTAATTTCCCAACTTGCC
CCCTAAAAAATTTTGCCAGGCCTAAGCATCGGACCCCCCCGAGAAAATGT
ATTtaaatacattcaacttttgaataaaatttatgTGGTTGAGTCCTAGA
AAAGTTGTCACGGATCCTAAGGTTTGGCCCCCTACTTTGTTATGAGTGTT
ATCATGTTTATTATGAAGAAAAATCTAAGAAGTTTATCTTAAAGCTAAGT
AATCTGACTTTATGCTATTGGAGTCCTTATCTCATTCAGAGGTCAATTTA
TATACCGTGTCTATTTTCCTTAGGTGCAAAGGATGTGCCTCAAACTGCTA
CAACGACCACTGCAACCACaactacaacgaccacccctacaCCAGAACCA
CCCCTAGTAATTACTGAACAAGATCTGATCGACACTACCGATACTTTCGA
AGTCACAAAAACTCCATCAACAACGAGAGCAACGACTACTGCTACAACAA
CTACGACAACCACCACCCCGACcactacaacaacaacgaccatcCCAACC
ACGACAACGACTACCCCAACGACTACAACGACCATTCCTACTACAACCAC
GACAACGACTATCCCAACCACAACGATAACCACCACCCCGACCACAACAA
CGACCATTcctacaacaacaacgaccatcCCAACCACGACAACGACTACC
CCAACGACTACAACGACCATTCCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032637XLOC_032637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051484-exon-scaffold_202-1491911889:194104..194235TCONS_00051484-exon-scaffold_202-1491911889:194104..194235Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:194104..194235TCONS_00051484-exon-scaffold_202-1510915933:194104..194235Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:194104..194235TCONS_00051484-exon-scaffold_202-1575043694:194104..194235Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:194866..195000TCONS_00051484-exon-scaffold_202-1491911889:194866..195000Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:194866..195000TCONS_00051484-exon-scaffold_202-1510915933:194866..195000Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:194866..195000TCONS_00051484-exon-scaffold_202-1575043694:194866..195000Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:195386..195497TCONS_00051484-exon-scaffold_202-1491911889:195386..195497Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:195386..195497TCONS_00051484-exon-scaffold_202-1510915933:195386..195497Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:195386..195497TCONS_00051484-exon-scaffold_202-1575043694:195386..195497Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:195741..195970TCONS_00051484-exon-scaffold_202-1491911889:195741..195970Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:195741..195970TCONS_00051484-exon-scaffold_202-1510915933:195741..195970Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:195741..195970TCONS_00051484-exon-scaffold_202-1575043694:195741..195970Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:198841..199039TCONS_00051484-exon-scaffold_202-1491911889:198841..199039Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:198841..199039TCONS_00051484-exon-scaffold_202-1510915933:198841..199039Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:198841..199039TCONS_00051484-exon-scaffold_202-1575043694:198841..199039Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:199540..199569TCONS_00051484-exon-scaffold_202-1491911889:199540..199569Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:199540..199569TCONS_00051484-exon-scaffold_202-1510915933:199540..199569Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:199540..199569TCONS_00051484-exon-scaffold_202-1575043694:199540..199569Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:200760..200897TCONS_00051484-exon-scaffold_202-1491911889:200760..200897Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:200760..200897TCONS_00051484-exon-scaffold_202-1510915933:200760..200897Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:200760..200897TCONS_00051484-exon-scaffold_202-1575043694:200760..200897Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:201673..201795TCONS_00051484-exon-scaffold_202-1491911889:201673..201795Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:201673..201795TCONS_00051484-exon-scaffold_202-1510915933:201673..201795Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:201673..201795TCONS_00051484-exon-scaffold_202-1575043694:201673..201795Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1491911889:205477..205879TCONS_00051484-exon-scaffold_202-1491911889:205477..205879Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1510915933:205477..205879TCONS_00051484-exon-scaffold_202-1510915933:205477..205879Clytia hemisphaericaexon
TCONS_00051484-exon-scaffold_202-1575043694:205477..205879TCONS_00051484-exon-scaffold_202-1575043694:205477..205879Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:194104..205879 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0513013	0	0	0	0.243742	2.95845	2.24324	1.19453	2.06585	2.27805	0.491435	10.0171	8.58194	9.9068	13.0489	0.86476	2.05437	0.434342	0.573318	0	0.269124	0	0	0.106954	0.120413	0	0.0599319	0.120724	0.0279773
Blast
[Close]
BLAST of TCONS_00051484 vs. Swiss-Prot (Human)
Match: MMP28 (Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.337e-36
Identity = 90/289 (31.14%), Postives = 134/289 (46.37%), Query Frame = 1 
Query:  244 KKLKRTPQRSFLKWGYLNTDSFSESMEIP-AENIKDFQNYANLPETGILDDATVDQLSKPRCGLPENVEQIXXXXXXXXXXXXXXXXXXXXXXXXXXYNRSGRSRRYLQQGTSWLPLFQKTGKNELKWTLENSGRTLDSSIIKINLRKAFDFWSQVTNLNFIEIPESQVGEPGFEKNDIEILVSFVTGQHNDPYW--FDGPDGTLAHAFYPLTNVGLSGDIHFDDDENYTIQSKDGYNFLWVAVHEIGHSIGLEHSDFDDAVMYPWFTAYDPDLQLSLDDIFGIQSIYG 1101
            ++L++  +    K+GYLN            ++ I+ FQ  + LP +G+LD AT+ Q+++PRCG+ +                    A    D       +  R +R+ +QG  W        K  L + L N    L    ++  +R AF  WS V+ L F E P +            +I ++F  G HND     FDGP G LAHAF P       G+ HFD DE +++  + G N   V  HEIGH++GL HS    A+M P++     D  LS DD+  +QS+YG
Sbjct:   30 QELRKEAEAFLEKYGYLNEQVPKAPTSTRFSDAIRAFQWVSQLPVSGVLDRATLRQMTRPRCGVTDT-------------NSYAAWAERISDLFARHRTKMRRKKRFAKQGNKWY-------KQHLSYRLVNWPEHLPEPAVRGAVRAAFQLWSNVSALEFWEAPAT---------GPADIRLTFFQGDHNDGLGNAFDGPGGALAHAFLPR-----RGEAHFDQDERWSLSRRRGRNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDALLSWDDVLAVQSLYG 284
The following BLAST results are available for this feature:
BLAST of TCONS_00051484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP287.337e-3631.14Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP... [more]
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